mRNA_S-ischiensis_contig8.19235.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19235.1
Unique NamemRNA_S-ischiensis_contig8.19235.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.180e-57
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKRD 321
            M+VKRRNHGRNKKGRGHV RVRCASTAKA+PKDKAIKR IV RNIVDASSLRDIREASV++ Y LPKLYIKQYYCVEAAVHQRIVRSRS +TRRNR+PP+RHRPKRD
Sbjct:    1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIV-RNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 9.310e-55
Identity = 92/107 (85.98%), Postives = 97/107 (90.65%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKRD 321
            M+VKRRNHGRNKKGRGHVKRVRC STAKA+PKDKAIKR IV RNIVDASSLRD+REASVY  Y LPKLYIKQYYCVEAAVHQRIVRSRS + RRNREPP R RPKR+
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVRCVSTAKAIPKDKAIKRFIV-RNIVDASSLRDLREASVYANYALPKLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.660e-50
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIR 303
            M+VKRRNHGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASS+RDIR+AS +E Y LPK+YIKQYYC+EAAVHQRIVRSRS + RRNREPP R
Sbjct:   24 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSMRDIRDASAFEAYALPKIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPAR 123          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.990e-50
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHR 309
            M+VKRR+HGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASS+RDIREAS +E Y LPKLYIKQYY VEAAVHQRIVRSRS + RRNREPP R R
Sbjct:   15 MTVKRRSHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSMRDIREASAFENYALPKLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S3K046_9STRA (40S ribosomal protein S26 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K046_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.030e-48
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHR 309
            M+VKRR HGRNKKGRGHV RVRC ST KA+PKDKAIKR +V RNIVDASS+RDIR+AS YE Y LPKLYIKQYYC+EAAVHQRIVR RSR  R+NREPP+R R
Sbjct:    1 MAVKRRAHGRNKKGRGHVLRVRCVSTGKAIPKDKAIKRFVV-RNIVDASSMRDIRDASAYESYALPKLYIKQYYCIEAAVHQRIVRLRSRTERKNREPPMRRR 102          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S0GMG9_9STRA (40S ribosomal protein S26 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMG9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.660e-48
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIR 303
            M+VKRRNHGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASSLRDI+EAS Y+ YTLPKLY+K YYCVEAAVHQRIVR RSR+ R+ R PP R
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSLRDIKEASAYDDYTLPKLYLKMYYCVEAAVHQRIVRGRSREGRKIRTPPPR 100          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A067D0A6_SAPPC (40S ribosomal protein S26 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0A6_SAPPC)

HSP 1 Score: 157 bits (398), Expect = 4.750e-48
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKR 318
            M+VKRRNHGRNKKGRGHVKRV C STAK +PKDKAIKR +V RN+VDAS++RD++EASVYE Y LPK+YIK YY +EAA+HQRIVR RS D R+NREPP R RPKR
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVV-RNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVDGRKNREPPARFRPKR 105          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.750e-48
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRP 312
            M+VKRRNHGRNK GRGHVKRVRC STAKA+PKDKAIKR +V RNIVD+S+LRDI+E+S YE Y LPKLYIKQYYC+EAAVHQRIVR RS   R+NR PP+R RP
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTAKAIPKDKAIKRFLV-RNIVDSSALRDIKESSAYENYQLPKLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A4D9D267_9STRA (40S ribosomal protein S26 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D267_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.360e-47
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRP 312
            M+VKRRNHGRNKKGRGHVKRVRCAST KAVPKDKAIKR++V R+IVD SS RDI+EA V+E Y LPKLYIKQYY VEAAVHQR+VRSRS++ RR REPP R RP
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVV-RSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRIREPPERKRP 103          
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A8J5XGW0_DIALT (40S ribosomal protein S26 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGW0_DIALT)

HSP 1 Score: 155 bits (392), Expect = 3.900e-47
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKR 318
            M+VKRRNHGRNK GRGHVKRVRC ST KA+PKDKA+KR IV RNIV+ S+LRD++EAS  EGY LPK+YIK YYC+EAA+HQR+VR RSR+ RR REPP+R RP R
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAVKRFIV-RNIVETSALRDMKEASCIEGYQLPKIYIKNYYCIEAAIHQRVVRVRSREARRIREPPVRPRPPR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF3_ECTSI1.180e-5787.8540S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=... [more]
A0A835YLU3_9STRA9.310e-5585.9840S ribosomal protein S26 n=1 Tax=Tribonema minus ... [more]
A0A7S2MQP1_9STRA1.660e-5083.1740S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID... [more]
A0A7S2SUN8_9STRA6.990e-5083.5040S ribosomal protein S26 n=1 Tax=Rhizochromulina ... [more]
A0A7S3K046_9STRA1.030e-4879.6140S ribosomal protein S26 n=1 Tax=Aureoumbra lagun... [more]
A0A7S0GMG9_9STRA1.660e-4882.1840S ribosomal protein S26 n=1 Tax=Proboscia inermi... [more]
A0A067D0A6_SAPPC4.750e-4875.4740S ribosomal protein S26 n=3 Tax=Saprolegniaceae ... [more]
A0A7S3MCB3_9STRA6.750e-4877.8840S ribosomal protein S26 n=1 Tax=Spumella elongat... [more]
A0A4D9D267_9STRA1.360e-4779.8140S ribosomal protein S26 n=1 Tax=Nannochloropsis ... [more]
A0A8J5XGW0_DIALT3.900e-4773.5840S ribosomal protein S26 n=1 Tax=Diacronema luthe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:62870..67852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue4.5e-44
Seed eggNOG ortholog2880.D8LSF3
Preferred nameRpS26
KEGG rclassRC02396
KEGG koko:K02976,ko:K13379,ko:K18739
KEGG ReactionR09009
KEGG Pathwayko00520,ko03010,map00520,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010259,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030867,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0042175,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0055044,GO:0071704,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4830@1,KOG1768@2759
EC5.4.99.30
COG Functional cat.J
CAZyGT75
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03019,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S26e
Ec32 orthologEc-21_003480.1
Exons3
Model size324
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19235.1prot_S-ischiensis_contig8.19235.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 62870..67852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.6612914-CDS-S-ischiensis_contig8:62869..630681622817269.6612914-CDS-S-ischiensis_contig8:62869..63068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 62870..63068 -
1695740982.934093-CDS-S-ischiensis_contig8:62869..630681695740982.934093-CDS-S-ischiensis_contig8:62869..63068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 62870..63068 -
1622817269.675387-CDS-S-ischiensis_contig8:66048..661081622817269.675387-CDS-S-ischiensis_contig8:66048..66108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 66049..66108 -
1695740982.9493175-CDS-S-ischiensis_contig8:66048..661081695740982.9493175-CDS-S-ischiensis_contig8:66048..66108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 66049..66108 -
1622817269.6866229-CDS-S-ischiensis_contig8:67787..678521622817269.6866229-CDS-S-ischiensis_contig8:67787..67852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 67788..67852 -
1695740982.9600348-CDS-S-ischiensis_contig8:67787..678521695740982.9600348-CDS-S-ischiensis_contig8:67787..67852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 67788..67852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19235.1

>prot_S-ischiensis_contig8.19235.1 ID=prot_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASS
LRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPI
RHRPKRD*
back to top

mRNA from alignment at S-ischiensis_contig8:62870..67852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19235.1 ID=mRNA_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4983bp|location=Sequence derived from alignment at S-ischiensis_contig8:62870..67852- (Schizocladia ischiensis KU_0333)
ATGTCTGTCAAGCGCAGGAACCATGGCAGGAACAAGAAGGGGCGCGGCCA CGTGAAGCGCGTCAGGTGAGCCGAGGGCGAGCGCTTCGGTGTTGGCTGGG GGTGCAAAGGGGCCGGCGATGCGTGGGTGCAGAGTGGCGCACTCGCACTA TCCGACACCGGCTGACGGGTCGCGGGTGGCAGGTTTTTTTGGGGGGACGA ATATCTGTTTGCCTCAGGCATAGATTGACTTGGGATAGTGCCGCCATGGA GCGGCCTGTCGCTGTTCTGGCGATCGGCCTTGGGAGGACAGGTGCACAGT CAGGGTCATTGGAGCAGTAATCAGCCCATGGATGCAGCGTCCTTGGCATG TATTAAGAGCAACCCTGCCACAAAAATTATGGAGCATGCCTGCGGTTCTC GTGTGTGCTTCATGATCTTCCCTTTGGGGGAAGGGCGGCCTTTCTCTGGT CACCTTAAGTTACAGTCCACTTCCACACGGGCGTTTGCACGATCGAGGCC CCGCAGATATTACAGTCTGTTGGCTGATGCTTTTGGGGGGCCTTGTCCTG CGCTGTCTAGAGTTTCACGCCGAAATCGTCAGGTTATCCACGATTTGCTA GTGCTAGTGCGGTTCACCTGTGTGCAGGTAGTTTGTTGGGCTGGCAAGAG GTGAGCACATAATTGCCGCTGACAGCATTTTGGCAGGTGATTCGGCCCTT CAGAACCGCCCTTCCCGCTTGAACCAGATACCACGCCTCTTCTCTGCGTG GATTTTTTTGTTCACCTCTGAAGGGTTGCCGGTCTTTATTTGGGTATCCA CCCCGCAGCTCGGTGAGCGCAGCTTGAGTGGAGAGGCGAGCAGTTGACTG TGCTGGCGATATTGCATCATACCCGGTGCACGAATGCCGTAAGAGCTGTA GCTGTGGAAATTGTTGAGTTTTCTCCGTGGCCGCTGTTCCTGCGTGCCGG CTGATACGACGACAGGAGTGCGTTTTGCCGCCTGGGGTGCAACCGCCCGC CGATGCGGGACATGCCCCGAGCCCTGCGCGCGCACTCTGTTGAAAGTTCA TCGAGAAAAGCACAAAGATGCGTTGCCGTTTTAATGGCCTCAATGCCACC ATGTATTTTCGTGGTGATGCGTCCAAGCATCACCTCGCCCTCCCTAGTGC CTCTTGGTTCTCATGGGCCAAGTGCTGTATGTTGTGAGTGCTTGAGTGCT TGGAAGTACAGGGCGTTCGTGTGCGTGTGTGTGTGTGTGAGCGCGTGCGT GTGTGTATGTGTGCACACGTATGCCCTCACTGCTGAGCACAAGACTTGGG ATGGAGCGCCCCGTACGTACATAAATACATGTATAGGAGCCAGGTGCGTT TGCGGTGCATGTTGGGAGGGGTGTGAATGGATAGCTCAAGCGTCAGAGCG GAAGCGTGGTCACTGGTCCCTGGAATACGGTAAAAGCACACAGGTTGGCG TCCAGAGAAGATTTTGTCACACGTCCTCAGCAGACTATGCCTTCCTGACC TTTATGCCTGGACTGCGGACAAGCATAAAGTACCCGTACATTGAAGAACA CGTCCCAATCAGAGAGACGTTTCGACCTCGCGCCCTCAGCGAGATGTTCT TGGCAACCTTTGCCGGGTGCTTTTTGCCCTTTTGCGGTGCCCTTTGACTT ACACGTGCGATTGTACCTCGTTGCAATTTATATGAATCACCGCCCCTTGA CTGTTGCTGGTATTCTTGTGGGTGCGTAACAACGCCTCTGGCAGGTGCGC CTCCACGGCCAAGGCGGTCCCCAAGGACAAGGCCATCAAGCGCATCATCG TCAGGTGAGCAAGACTACAAGTAATCACGGGAAAGGTTGCCGTGTGTAGG TCATGTACTTACAATGGTCTCGGGACCACGGCAAGCACCACGTGAGTACT ATATATATATATATGTATCGGCATTGCACGCAAGGTCATGTCGCAAGACA AGCCAATGAGTACACACACACACATATATATATATATGTATATATATACG AAGTACCTACAGTACGAGTACCTGCCGAAGGCCTGAAAGAGCGGACCCGT TCGGAGGCACACGGCATGGGAGTTGCGTGTGGTCCGCCCTCGGGGGGGAG GTCTGATGTCTGCAGTACGTCCATGGTTTCAACGGGCGTCGAAATTACGA GGCACAGCTCTAAGCACACGAAGAAAAGTACAGTAGGTACTGCTCCGTCT CGACCGAGGCGCGTGTTCAATGGTCTCGGGACTACGGCTAGCACAATGTA AGTACATACATACCACGCGAACAGGCGGAAGCCTCTCGTTCCGCTGGCGG CACGGCCGTACACTCCATTCATTGTTTCTTTTGATATGTACGCACAACGT GAGTACGAGTACATATATATCCGGCTTGCCAATGCCAAGGCATCATGGCA TTCCGGGCTTGGCCAGTGCACGGCCTGGCCGGTGCAAACCCGGCATGCTC CGTCCCGGCCTAGTTGGGATGCGAGAGTCCATGGCTTAATAGCTACTCCT GTCGGAGGGCAAACCTGAAGTTTCGACGTAGGGCTGTCGGCATTGCATGC ACGGTTATGTCACAAGACAAACTAATGAGTACATATATATACTACGTACA GTAGTGTACGTAGTATATATATATGCCGAGCCGCGTGGTCAATGGTCTCG GGACTACAGCAAGCATAGCGTGAGTACATACTGTACCCGTATATACTTCG TATTTATGCTCCGCCTCGAACGAGGCGCGGGGTCAATGGTCTCAGGACTA CGGCAAGCACCACGTCAGTACATACAACTATATATATACTTTGTATATAT ACACTTCGAAGTATACTCAGAGGGGATCATTGTCGGAGGGCAAAGCCGAA GTTTGACTTACTAGTAGTGCTGTCGGCTATGTACTATAGGTCTATGTCGA AAGACCAGTGAGTACACACAGACATAATGTGCATAATATAAGAGCACGAT GTATATTGTAGTGAATGGTCTCGAGACTACGGCAAGCACAATGTATGTGC ATATATATGTTGTACTCGAGTATTTCCGGAAGTACTGTAGTGTAGATGTA CCCACGCCGGACAGAGTTGCGCCATGTCCTGTGCACCGTCGGTACAGTAC TACATGCTGGACCACCGCATCAGCCCCCGCAGAGAGTGCATTGTAGTACA GCAGTGCTCGTACTATATATACTGCAAGGGGGCCTGCTCCGCGTCGGTCG AGGTGGGTGTTCAATGGTCTCGGCACTATGGCAAGCACTGTCAGGTGTGA GTACATATTGCGCATGTCATACCCTAAAGTTTACTACATACTTAGTATTG TGTCGCCGTCCGCGAGCCAAGCGTTGCAGCACCGGTGCATTGGCTCGAGT GCCGCGTCTTGAGCCCTGGGCTGGCCGGGGGGAGGGTGGGAAGGAATTTG GGCACTGGGGCGTATCGCCGCCCGCCTGCAGGAGGGAGGCGCAGGCGGGC CTGTTGCTGGGAGGGCACGGGGGGCCCGTTGAGAGCTGAGGGCAGGCCAC TACCAATTATGCACTCCATACAGCTGTGAACCGGAGCCGGTTTTTAGCAG TCGGTTCCGTTTAACTGACCTGTTAAACCGGTGGACGCCTCGCCGTTCTT TTCTCGTGCATCACCGTGCCTACAAAATTTTGTTTGGACATTCGATATCG CCGGTGCACGGCGGCCTAATGCCGTCATATCGCCGATTTCGGCCAAAACA TGGCCGTTTTTGTTCCGAAACTTGCTGGTGAAAGAATCGGCTGAACCGAG AACCGGTTCCGATGCCGGCTGCAGTTTCCACCGGCCGGCATGGACAGTTC GCCGCTCTTCTCTAGTAGTCCCCCTAGTACAATACGCCGAAGTGCTTGGA CGTTGGTGCAAAGGCACGGAAGATACTGCAAGTGCTAGTGCACGTACTGT AGATGACACTTACACGTCCGCACCTGTACATATGATAGTGGGGGGGCGCG AGGGTCATGGCCAAGTGCTAGAACTTGGGGTTAGTTAGCTTTTCCCCTCT GGAAGTGTTTACTACGGGGGGGGTTCGACCAGGCACACCTTGGCTAGGGA TGACGCGGAGTACCTAGTCGTATTTTGTACGAAAGTACGTGGCTGCGGTG CCGTACAGCACCTTACTTCGAAGAACTAACAGGAACAACACAGGGCTTGC TAGTATTAGCAGGAACAGCACAGGGCAAGGTGCAGGCCACGCCACTAAAG ACCTCCACAGTGGCCCTTCCTTATAGCTCGCCAAGGGAAAGTTGTGTGGG GAAGGGGAGAAAAGGAGGAGGGGGAGGAGTACAAGCTGCGCACAATGATG TATGTTCCCACGGGACATTTTCCTGCTGTTTTCTCCCTGTAACCTGCGTA CAATTAGCCCCTCATGGGGCTTTCGGAGACAGGCCGTAGATGCAGACAAG CAGGTCAGAGTGCCCGCACCGACTGTGGCAACTGTTTGTTTCAAGGTACT GTAAGTACTGCTTGGAAGTGTGATACTACCCTAACGTACACACTCGAGTG CTTCCAAGTACAGTACCTGTAGTGCGAGCACTGCAGTGCAGTACTACTGT ACAATGTACTTCTAAGTGCTACTCTACATTTGTAGTATGTAGGAAGGGAT GCAGCAGGGTGTTGTTTACTTGGCTGGCCTGCTCCGGGCTGCTCGAGAGG CCGTCGGGCTTGGTTGTCCCACCATGCTCTTTGCCCACCCCCCCGCGCCG CCGGTTGCTGTTGCTGCCTCCCCCGCCATCCCCCGTCTCTCCCTCCCTCC CCCCCTCCTCCCTCCCAATGCCGCATGTATGGAGCAGGAACATCGTGGAC GCCTCCTCCCTGCGTGACATCCGCGAGGCCTCTGTGTACGAGGGCTACAC TCTGCCCAAGCTGTACATCAAGCAGTACTACTGCGTCGAGGCGGCGGTGC ACCAGCGGATTGTCCGCTCGCGGAGCCGGGACACCCGGCGGAACCGGGAA CCGCCGATCCGCCACCGCCCCAAGCGCGACTAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:62870..67852-

>mRNA_S-ischiensis_contig8.19235.1 ID=mRNA_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig8:62870..67852- (Schizocladia ischiensis KU_0333)
ATGTCTGTCAAGCGCAGGAACCATGGCAGGAACAAGAAGGGGCGCGGCCA
CGTGAAGCGCGTCAGATGTCTGTCAAGCGCAGGAACCATGGCAGGAACAA
GAAGGGGCGCGGCCACGTGAAGCGCGTCAGGTGCGCCTCCACGGCCAAGG
CGGTCCCCAAGGACAAGGCCATCAAGCGCATCATCGTCAGGTGCGCCTCC
ACGGCCAAGGCGGTCCCCAAGGACAAGGCCATCAAGCGCATCATCGTCAG
CAGGAACATCGTGGACGCCTCCTCCCTGCGTGACATCCGCGAGGCCTCTG
TGTACGAGGGCTACACTCTGCCCAAGCTGTACATCAAGCAGTACTACTGC
GTCGAGGCGGCGGTGCACCAGCGGATTGTCCGCTCGCGGAGCCGGGACAC
CCGGCGGAACCGGGAACCGCCGATCCGCCACCGCCCCAAGCGCGACTAGC
AGGAACATCGTGGACGCCTCCTCCCTGCGTGACATCCGCGAGGCCTCTGT
GTACGAGGGCTACACTCTGCCCAAGCTGTACATCAAGCAGTACTACTGCG
TCGAGGCGGCGGTGCACCAGCGGATTGTCCGCTCGCGGAGCCGGGACACC
CGGCGGAACCGGGAACCGCCGATCCGCCACCGCCCCAAGCGCGACTAG
back to top