mRNA_S-ischiensis_contig78.19130.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19130.1
Unique NamemRNA_S-ischiensis_contig78.19130.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig78.19130.1 vs. uniprot
Match: D7G2A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2A1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.200e-23
Identity = 63/118 (53.39%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  421 SPMDIYADRAALLRELTKGMKPDRRLSFQTRVANGRNRESMEALFRDFGEHLAMLTLPHVRSREMDLEQVKKDTTRERVSLDGEDMRFLGSPSDNPHGWHDELWATVEARVTAGLLGG 774
            S +D Y+  AALLREL K M  D+RLSFQTRVAN R +ES+E++  D+ E L  L LPH RSREMDL+QVKK   R   S  G      G+   +P  WH+ELWAT+EARV   +L G
Sbjct:  166 SNVDYYSAPAALLRELVKEMPADKRLSFQTRVANARTKESIESVLEDYAERLESLVLPHARSREMDLQQVKKTGKR---SFSG------GALPTSPTTWHEELWATLEARVMESVLSG 274
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2A1_ECTSI1.200e-2353.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:634996..640000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001920.1
Hectar predicted targeting categoryother localisation
Exons3
Model size995
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19130.1prot_S-ischiensis_contig78.19130.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 634998..640000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817239.5935614-CDS-S-ischiensis_contig78:634997..6353541622817239.5935614-CDS-S-ischiensis_contig78:634997..635354Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 634998..635354 -
1695740960.9699976-CDS-S-ischiensis_contig78:634997..6353541695740960.9699976-CDS-S-ischiensis_contig78:634997..635354Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 634998..635354 -
1622817239.6074169-CDS-S-ischiensis_contig78:637439..6376271622817239.6074169-CDS-S-ischiensis_contig78:637439..637627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 637440..637627 -
1695740960.980548-CDS-S-ischiensis_contig78:637439..6376271695740960.980548-CDS-S-ischiensis_contig78:637439..637627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 637440..637627 -
1622817239.6201832-CDS-S-ischiensis_contig78:639552..6400001622817239.6201832-CDS-S-ischiensis_contig78:639552..640000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 639553..640000 -
1695740960.9899275-CDS-S-ischiensis_contig78:639552..6400001695740960.9899275-CDS-S-ischiensis_contig78:639552..640000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 639553..640000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19130.1

>prot_S-ischiensis_contig78.19130.1 ID=prot_S-ischiensis_contig78.19130.1|Name=mRNA_S-ischiensis_contig78.19130.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=331bp
DLSASSCVVCPPSEWAGGSPSLVARLWSNRPLRCLPSRDAMAAGPLVGDA
LLELAVAKQLADVLGAWHAEGEDTDDERAAAVAAAGPATKGDEFRLVTPP
PTVEAPERWAGPRRDPKHYSGHGRRRPRKKASRALNGSSSSPMDIYADRA
ALLRELTKGMKPDRRLSFQTRVANGRNRESMEALFRDFGEHLAMLTLPHV
RSREMDLEQVKKDTTRERVSLDGEDMRFLGSPSDNPHGWHDELWATVEAR
VTAGLLGGGNGAAGAGGGGASGGSRSKGKGRWWPGTSTTTAAKTPSLSLS
PTRPGKYDDEEVKDGSRQQLPHDAAALSEGG
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mRNA from alignment at S-ischiensis_contig78:634996..640000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19130.1 ID=mRNA_S-ischiensis_contig78.19130.1|Name=mRNA_S-ischiensis_contig78.19130.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5005bp|location=Sequence derived from alignment at S-ischiensis_contig78:634996..640000- (Schizocladia ischiensis KU_0333)
GACCTTTCGGCATCGAGCTGTGTTGTCTGCCCGCCCTCGGAATGGGCTGG
CGGCTCGCCAAGCCTCGTTGCGCGTCTATGGAGCAATAGACCCCTTCGCT
GCTTACCAAGTAGAGACGCAATGGCGGCGGGACCGCTTGTCGGCGATGCG
CTACTAGAACTGGCTGTAGCCAAGCAGCTGGCCGACGTCCTGGGGGCTTG
GCATGCGGAAGGAGAGGACACCGATGACGAGCGTGCCGCGGCTGTTGCGG
CAGCAGGGCCTGCCACAAAAGGCGACGAGTTCCGACTGGTTACACCGCCA
CCAACGGTGGAGGCGCCCGAAAGATGGGCGGGACCAAGGAGGGATCCCAA
GCACTACTCTGGCCATGGCCGACGGAGGCCGAGGAAAAAAGCCAGCAGGG
CGCTGAATGGGTCCTCGTCCTCACCGATGGACATATATGCAGACCGAGGT
GCACCGGTTTCCTTGTCGCGGTAATGGAGTTCGCGGCATGGCATGACGAG
GCTGTACCCACTCTCCTCAGTCAAAGCTGTCAATCGGCGGGGTACTTCGC
TGCTTGTCTGATGAATATGTTTCGGTTTTGCTTTTTGTCGGCAGATTGTT
ACCAGTGATGTTTTATAGACAGGGCTCCCATTCTGTCGAGGAACTTGTAG
CCGGCGGTTGCCTTCGTTAGATAGGCGACGGCAACATGGCAAGTGGACTT
GCAGCTTGGCCGCAAGTATGACCCGTCTCGACGGAGGGCAAAAAGGGGAG
AAGATAGGGAATCGGCTCGGTTTTTTTCAGGTTGGCCTTTTGGTCCAAAG
CCGGGGCAAACATCAAATAACAAAGAAAAACAGCTGTTTGCGAGACGTGT
CTACCAGTACTTGCATGTGCAGACAACACAGCAGGCAGCGGGGGTTGTAG
CCGGAGCCTTCGTTGTTTCATCACTTGCATGTTTTTCTGGTAAGTATCGT
TTTATAACCACCCGAAGCCATACCATGACATTTGTTTCCGGGTTGTTCTC
CTGTGAAATTTTGGCGCGTTTTGGCGTTCGATGTAGCCATTGCGCACGAA
ACCTGCCTTTGCTCGAGTACACCTTTACACGAACATACGCGCAGGAAAGA
TGTACGGGTTGCACGCGTCCTGCTCATGACAGCCAATCCTCCGGTTTGCT
CGCCCGAACAAGGGGCAATGGTGAAAATGCCGTTGTTCCGGGGGCACCCA
ATGGCGGGCCGGGGATCGGTGTGCAACCCATCGCCTGGCCAGTGAGAAGC
CGGTATGCTCCGTCCCGGCGAAGTTGGGACGCGAGGCCAATGGCCAAAAG
GTTACCCAGCGGGGGCTGGCCGGCGGTCCAGCAAGTAGTACACTGGGCCG
ACGGTCGGTGACATGCACAGGACGGGGTGTCCCCTGTCCAACGTGAGCAC
GCACACACGCACACACACACACACACGTTTAGCGGCCCAACAAAAGAGCG
AACATATGGCAATACAATTGTACAATACCTGATTATTTATGAGTACTTCG
AAGTACGAGCACTCATGGTTTGCATGCATGGCCCCCTCGGCACGCTGTGC
ATAAGTTAGTCACAGCACGTCGGCCATCGACCCTCGCTTCCCTACTAAGC
CACGACGGAGCATGTCGGGTTTTGCACGGACCAGGCAAGTGCAGAATCAA
ACATACTATGGACTACTACAGTTTCGCTGGTTGAGAAGTACTAACTATAC
GCTGCAGTTAACTCGAAACTTCGGGTTTGCGCGGGCCAGGCAAGCGCAGA
CCAAACCCGCCGTGCCACGGCGGTTTACAATAGGGACGCCGGATGAGAGG
GCAGCTGCATGGTTGCGTAGCGCCGTTTTTGATTTCCGGCGGAAGCCGGC
CGCGCTCTTCCGTGATCTGACCGAGGGTGTGCGGAAAGCAAGTACTTCCA
AGTACTATTGTAGTAGCTCCGATCGTTTTTATCCCTCGCAGTGGCTGCCG
CCGCGTGCCGTATTCCATCCTCTTCGTTCTTCCGTCCCGTCACAAACCAC
ACCTAGATACAAATACCCTGCATGCCTGCTTCATCCTCCCACAACAAGCC
TGCTCTGAGTCGATCCACCTACTGTACTTGCACTGCTCGTGTCTTGTTCT
ATTATTATATACGTAGTCACATGGTGCTTGCCGTAGTCCCGAGACCATTG
ACCATTACTGCTGCTGTTTTTTAATCTCTATCGTGACTGCTTGCGGTAGT
CCCGAGACCATTGACCGTTATTTTTGCTATTTTTTTATTTTTTTCCACGT
GACGGACGGCAGCCGCGCTCCTCCGCGAGCTTTACAAGGGCATGAAGCTT
CACCTACTTACTTGCACCCACTCGTGTCTGTTTTATTACTATTGTCATTT
TTTTTTCGTTCACGCGGCGGCAGCCGCGCTCCTCCGCGAGCTGACCAAGG
GCATGAAGCCGGACCGGCGCCTGAGCTTCCAGACGCGCGTGGCCAACGGC
CGAAACAGGGAGAGCATGGAGGCGTTGTTCCGAGACTTTGGGGAGCACCT
GGCCATGCTCACGCTGCCCCACGTCAGGTCCCGCGAGATGGACCTGGAGC
AGGTCAAGAAGGTGAGACGGATTGAGGAGGGGGGCGGGGAGTAGTACATA
TATACCACAACACGTACTCGTATGTATACATATATATGTGTGTGTGTGTA
CTCACGTTGTATTTGCCGTAGTCCCGAGACCATTGAGACCGAGCAGGATT
CTACATACTTGTAGTACCAACAGGAACAACACAGGTCAAAGTTGCAGGCC
CCGTCACTGAACACCTAAACAGTGGCCCTTCCTTAGCTCGCCAGGGGAGG
TTTGTTTGGGGGAGGGGACAAGCAGGAGGAAGAGGAGGAGGCGGGGGAGA
CACAGTACTTTGAAGGATCCGTGCGGAGCACTTTTTGAAAAGTCGGTTTA
TTCAAACATCGATTTGTTGCTCGCGATAGGCATCGCAGCAGAGGACGCCG
AAAACGTCCTCGGAAAGCTCTGTTCTGTCCCGACAACATGGGTGTCGCGA
GTTTTATTTCAATTTTACTTGAGTCCAGTTGTCAGCCAAAATTCGGTTCA
ACATCAATAGTTGTCATGCCATAATATTGGAGTTGAGACCGGTTGTGGAC
ACATCTCGGGCTGGGCTATCAGGGACACTTAATGAACACCAGAATCGTTG
GAAGTCCCTGTAATCGGGAAATACCCCTTTTAGGAACGGTTCAAGCGGTA
GTTTCAATCTGAAAAATTTAAAACGCCAGTAGTGCCCGATTTTTATGCCG
ATTTTGGACTGTTCAGGAGTATAGCTACTGCGCGTCGGAGCGATTTTATT
CGAAAAATGTTTGTGGCGCATGAAATCGATGCTCAAAGTTAGCTGTTCAA
ATCTCCGATTTTATTGGCCACACATATCGCGAAAATATCGACAGTCGTAG
TTGAGACCGGTTTTTGTACCGCTCGTCAAGACGAATCACATGGTCCCCTC
TGGTCTTGCCAACCAGTCCTACAGTAGATCAAAAAAACTTAAAAAATAGC
TGATACTGCCTGTATAGCGGGGGGCTCCTGGGAGGGAGGGAATAATGTAG
TATGGTCATGGTTGCATCCACCACCGATTTTGCTGAAAGTTTCACACTAG
ACTGGTTCGAGGACGCTGATTCGCATGGTGCAATCATTTCTTTTTTATTG
TTCGTAATTGTCGAGAGAAACAATGGGGGTCTGGTCATGGCAGAACTGTA
CTCTATTGCAGTCCATGGACAATATTAGTACAGTAATGCAGTAGAAGTAC
TGGTACTGCATGTGATCCACGAAGGAGCAAAGACGAGGATCGTTCGGGTC
CAGGGCATGCACAGAGACATAAGTACACACACACTGCTTGTACGGTAGTA
GTATGCAGTAGTAGTAGTTCTCGAAACACTTGTAGCCGTAGGCAGTAAGT
AGTAACTGGTATGTCATATTGTCTCAGGACTGTGGCAAGCACAAGGTGAG
CAAGGTACACGCCGTGTGTGCTTCCCGTTAAGTATAGTCTTTTTCCTGCG
TGGACATTTCGTAGTGAAGTCTCTATATCTACTAGTACTTGAGGGTCGTG
AACGATCGTCCCGGGGATTGCGGCAAGCACAATGTAGAGCAGGGGTGATT
CATATGCATTGTCCCTGTGTGTTGCTTCTTTGCCTGATTTTTGTGCCCTG
CCAGCCAAGAAGGGCTTCCGGTGAGGTCCACACCTTAGGTTGTTGGGACG
TGGCCCGGAATTCGCATGTCCTTAATAATACAACAAAAAATCGTAACGAG
GTACAATCGCACGTGTGTGTGAAGGGGGGGTGGGGGGCTACTTCGCTACA
GTGCACATGCTCACATTAGAAGGTTTTGCGGGGTGTCTGTCGCGACCGGA
CCGGCGCTCGGTCGCCACCCTTTGCCAGCGAAGGAATATTATCGACGGCC
GATATTCGATAGTTTGACCCACACTACATCCAAGTATTGTAAGGAACGAT
ACGGAGCGAGGTGCGGGCCACGTCACTAGAGACCTCAGCAGTGGCCCTTC
CTTAGCTTGCCAGGGGAAATTTGTGCGGGGGAGGGAGAGGAGGAGGGGGG
CAAGTAGTTTGTAACGCCGCCCACAAAATCAGTCGAGCCCGATAACTATC
TACGGATCGATATTCCATCACCGACCTTTGCCCGCACGCCTGCCAGGACA
CGACGCGAGAGCGCGTATCTCTGGACGGGGAGGACATGCGCTTCCTGGGC
AGCCCTTCCGACAACCCACACGGGTGGCACGACGAGCTATGGGCCACAGT
GGAGGCGCGGGTCACGGCCGGGCTGTTGGGAGGCGGCAACGGGGCGGCGG
GGGCCGGCGGCGGCGGAGCGAGCGGCGGGAGCCGCAGCAAGGGCAAGGGG
CGCTGGTGGCCGGGTACAAGTACGACTACTGCGGCCAAGACGCCTTCGCT
CTCGCTGTCTCCGACGCGGCCCGGCAAGTACGACGATGAGGAGGTGAAGG
ATGGATCGAGGCAGCAGCTGCCGCATGACGCTGCAGCGCTGTCCGAGGGA
GGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:634996..640000-

>mRNA_S-ischiensis_contig78.19130.1 ID=mRNA_S-ischiensis_contig78.19130.1|Name=mRNA_S-ischiensis_contig78.19130.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1986bp|location=Sequence derived from alignment at S-ischiensis_contig78:634996..640000- (Schizocladia ischiensis KU_0333)
GACCTTTCGGCATCGAGCTGTGTTGTCTGCCCGCCCTCGGAATGGGCTGG
CGGCTCGCCAAGCCTCGTTGCGCGTCTATGGAGCAATAGACCCCTTCGCT
GCTTACCAAGTAGAGACGCAATGGCGGCGGGACCGCTTGTCGGCGATGCG
CTACTAGAACTGGCTGTAGCCAAGCAGCTGGCCGACGTCCTGGGGGCTTG
GCATGCGGAAGGAGAGGACACCGATGACGAGCGTGCCGCGGCTGTTGCGG
CAGCAGGGCCTGCCACAAAAGGCGACGAGTTCCGACTGGTTACACCGCCA
CCAACGGTGGAGGCGCCCGAAAGATGGGCGGGACCAAGGAGGGATCCCAA
GCACTACTCTGGCCATGGCCGACGGAGGCCGAGGAAAAAAGCCAGCAGGG
CGCTGAATGGGTCCTCGTCCTCACCGATGGACATATATGCAGACCGAGGA
CCTTTCGGCATCGAGCTGTGTTGTCTGCCCGCCCTCGGAATGGGCTGGCG
GCTCGCCAAGCCTCGTTGCGCGTCTATGGAGCAATAGACCCCTTCGCTGC
TTACCAAGTAGAGACGCAATGGCGGCGGGACCGCTTGTCGGCGATGCGCT
ACTAGAACTGGCTGTAGCCAAGCAGCTGGCCGACGTCCTGGGGGCTTGGC
ATGCGGAAGGAGAGGACACCGATGACGAGCGTGCCGCGGCTGTTGCGGCA
GCAGGGCCTGCCACAAAAGGCGACGAGTTCCGACTGGTTACACCGCCACC
AACGGTGGAGGCGCCCGAAAGATGGGCGGGACCAAGGAGGGATCCCAAGC
ACTACTCTGGCCATGGCCGACGGAGGCCGAGGAAAAAAGCCAGCAGGGCG
CTGAATGGGTCCTCGTCCTCACCGATGGACATATATGCAGACCGAGCCGC
GCTCCTCCGCGAGCTGACCAAGGGCATGAAGCCGGACCGGCGCCTGAGCT
TCCAGACGCGCGTGGCCAACGGCCGAAACAGGGAGAGCATGGAGGCGTTG
TTCCGAGACTTTGGGGAGCACCTGGCCATGCTCACGCTGCCCCACGTCAG
GTCCCGCGAGATGGACCTGGAGCAGGTCAAGAAGCCGCGCTCCTCCGCGA
GCTGACCAAGGGCATGAAGCCGGACCGGCGCCTGAGCTTCCAGACGCGCG
TGGCCAACGGCCGAAACAGGGAGAGCATGGAGGCGTTGTTCCGAGACTTT
GGGGAGCACCTGGCCATGCTCACGCTGCCCCACGTCAGGTCCCGCGAGAT
GGACCTGGAGCAGGTCAAGAAGGACACGACGCGAGAGCGCGTATCTCTGG
ACGGGGAGGACATGCGCTTCCTGGGCAGCCCTTCCGACAACCCACACGGG
TGGCACGACGAGCTATGGGCCACAGTGGAGGCGCGGGTCACGGCCGGGCT
GTTGGGAGGCGGCAACGGGGCGGCGGGGGCCGGCGGCGGCGGAGCGAGCG
GCGGGAGCCGCAGCAAGGGCAAGGGGCGCTGGTGGCCGGGTACAAGTACG
ACTACTGCGGCCAAGACGCCTTCGCTCTCGCTGTCTCCGACGCGGCCCGG
CAAGTACGACGATGAGGAGGTGAAGGATGGATCGAGGCAGCAGCTGCCGC
ATGACGCTGCAGCGCTGTCCGAGGGAGGAGACACGACGCGAGAGCGCGTA
TCTCTGGACGGGGAGGACATGCGCTTCCTGGGCAGCCCTTCCGACAACCC
ACACGGGTGGCACGACGAGCTATGGGCCACAGTGGAGGCGCGGGTCACGG
CCGGGCTGTTGGGAGGCGGCAACGGGGCGGCGGGGGCCGGCGGCGGCGGA
GCGAGCGGCGGGAGCCGCAGCAAGGGCAAGGGGCGCTGGTGGCCGGGTAC
AAGTACGACTACTGCGGCCAAGACGCCTTCGCTCTCGCTGTCTCCGACGC
GGCCCGGCAAGTACGACGATGAGGAGGTGAAGGATGGATCGAGGCAGCAG
CTGCCGCATGACGCTGCAGCGCTGTCCGAGGGAGGA
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