mRNA_S-ischiensis_contig78.19059.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19059.1
Unique NamemRNA_S-ischiensis_contig78.19059.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:73716..75050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size856
Cds size852
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19059.1prot_S-ischiensis_contig78.19059.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 73716..75048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817237.9733334-CDS-S-ischiensis_contig78:73715..742881622817237.9733334-CDS-S-ischiensis_contig78:73715..74288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 73716..74288 +
1695740959.8379853-CDS-S-ischiensis_contig78:73715..742881695740959.8379853-CDS-S-ischiensis_contig78:73715..74288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 73716..74288 +
1622817237.9882212-CDS-S-ischiensis_contig78:74434..745101622817237.9882212-CDS-S-ischiensis_contig78:74434..74510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 74435..74510 +
1695740959.8528874-CDS-S-ischiensis_contig78:74434..745101695740959.8528874-CDS-S-ischiensis_contig78:74434..74510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 74435..74510 +
1622817238.0003045-CDS-S-ischiensis_contig78:74845..750481622817238.0003045-CDS-S-ischiensis_contig78:74845..75048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 74846..75048 +
1695740959.864177-CDS-S-ischiensis_contig78:74845..750481695740959.864177-CDS-S-ischiensis_contig78:74845..75048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 74846..75048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19059.1

>prot_S-ischiensis_contig78.19059.1 ID=prot_S-ischiensis_contig78.19059.1|Name=mRNA_S-ischiensis_contig78.19059.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=284bp
ALAHTAATAAAAAAAAAGVAGGAPGTPDYGSPGQGVPKAVPTVGIVPGLA
PGSWAGTSTPPGYIHLGGLPPSPASSTGSVPQAMAGASGVGLNLGADPSV
HATPLTQQLLETNPDLANAGGLLLTPASMGQYSCVYHQPAVNSTQGRLDP
QMLEELNWAVSRSSTPEGRQQHELQQQQRRQQEMQEQQRQLQLQLHVLQL
QQQLQAQAGYEGFYGSGVLSGAPAAPQLPMDPLSAASGGTASAHATWATH
PMTPNSMSGGFMAGVVTSQAAGGTIAAQATGGAT
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mRNA from alignment at S-ischiensis_contig78:73716..75050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19059.1 ID=mRNA_S-ischiensis_contig78.19059.1|Name=mRNA_S-ischiensis_contig78.19059.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1335bp|location=Sequence derived from alignment at S-ischiensis_contig78:73716..75050+ (Schizocladia ischiensis KU_0333)
GCACTAGCACACACAGCCGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGGTGTAGCAGGTGGGGCACCTGGGACTCCAGACTATGGCAGCCCAGGGC
AAGGGGTGCCCAAGGCGGTGCCAACAGTGGGGATAGTACCGGGGCTGGCT
CCTGGGTCATGGGCGGGGACCAGCACGCCTCCAGGATACATCCATTTGGG
GGGGCTCCCGCCGTCGCCAGCATCCAGTACTGGCAGTGTGCCGCAAGCCA
TGGCGGGAGCATCTGGGGTGGGGTTGAACCTGGGTGCAGACCCCTCGGTA
CACGCGACTCCCTTGACGCAGCAGCTATTGGAAACGAATCCGGACCTTGC
CAACGCTGGGGGTTTGCTGCTGACGCCCGCGTCAATGGGGCAGTACTCGT
GTGTGTACCACCAGCCCGCGGTGAACAGCACGCAGGGGCGGCTGGACCCG
CAGATGCTGGAGGAACTGAATTGGGCAGTGTCACGGTCTAGCACCCCGGA
GGGGCGCCAGCAGCACGAGCTGCAGCAGCAGCAGCGGCGGCAACAGGAGA
TGCAGGAGCAGCAGCGGCAACTGGTGCGTTTGGCAGCTCAGTGCTGACCG
TTGTCCAGACCAGAGTGGCTGGGTACCCATGTTGGTGTAGATTGCTTGGT
ACGCCCAAGGCGTATCCTTTGACCACAAACGTGTCTGACCGTGTCCTGCG
CCCCATTTGTACTGTGCAGCAACTGCAACTACATGTCCTGCAACTGCAGC
AACAGCTACAGGCACAGGCCGGCTACGAGGGCTTCTATGGATCAGGTGCG
CTCCGGTCCATTGAGAACAACTTGTGCGCACTTGCTTCTTAATACAAACT
ACTTGACAGTACTTGGAAACAAGTGCGTTTTGGGGGGCCGATGTCCAATC
CAGAGGCCCGTGCATTTGATTGGTGCCAACCATGTTTTGGTTTCTGTCAT
GCACAGAGCACGAGATGCTTGAATCGAAGTACTTCGAAGTATCAGACTAC
AAAAACCGAGCGAGGTGCTGCCCACGCCATTACACAACCTCAACAGTGGT
ACAGAGTAATGGCCTCTCTTCTTGGGAAGCAGAATGCACAGAATGAAGTA
GTTGACACCTGCCCCCAAATCTTGATGCAGGCGTGCTCTCAGGGGCACCA
GCGGCTCCGCAACTGCCCATGGACCCCCTCTCTGCGGCGAGCGGCGGCAC
CGCCTCTGCACACGCTACTTGGGCTACGCACCCAATGACCCCAAACAGCA
TGAGTGGGGGATTCATGGCGGGGGTGGTCACCAGCCAAGCTGCAGGGGGT
ACCATAGCAGCCCAGGCCACAGGGGGTGCCACTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:73716..75050+

>mRNA_S-ischiensis_contig78.19059.1 ID=mRNA_S-ischiensis_contig78.19059.1|Name=mRNA_S-ischiensis_contig78.19059.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1704bp|location=Sequence derived from alignment at S-ischiensis_contig78:73716..75050+ (Schizocladia ischiensis KU_0333)
GCACTAGCACACACAGCCGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGGTGTAGCAGGTGGGGCACCTGGGACTCCAGACTATGGCAGCCCAGGGC
AAGGGGTGCCCAAGGCGGTGCCAACAGTGGGGATAGTACCGGGGCTGGCT
CCTGGGTCATGGGCGGGGACCAGCACGCCTCCAGGATACATCCATTTGGG
GGGGCTCCCGCCGTCGCCAGCATCCAGTACTGGCAGTGTGCCGCAAGCCA
TGGCGGGAGCATCTGGGGTGGGGTTGAACCTGGGTGCAGACCCCTCGGTA
CACGCGACTCCCTTGACGCAGCAGCTATTGGAAACGAATCCGGACCTTGC
CAACGCTGGGGGTTTGCTGCTGACGCCCGCGTCAATGGGGCAGTACTCGT
GTGTGTACCACCAGCCCGCGGTGAACAGCACGCAGGGGCGGCTGGACCCG
CAGATGCTGGAGGAACTGAATTGGGCAGTGTCACGGTCTAGCACCCCGGA
GGGGCGCCAGCAGCACGAGCTGCAGCAGCAGCAGCGGCGGCAACAGGAGA
TGCAGGAGCAGCAGCGGCAACTGGCACTAGCACACACAGCCGCCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGGTGTAGCAGGTGGGGCACCTGGGAC
TCCAGACTATGGCAGCCCAGGGCAAGGGGTGCCCAAGGCGGTGCCAACAG
TGGGGATAGTACCGGGGCTGGCTCCTGGGTCATGGGCGGGGACCAGCACG
CCTCCAGGATACATCCATTTGGGGGGGCTCCCGCCGTCGCCAGCATCCAG
TACTGGCAGTGTGCCGCAAGCCATGGCGGGAGCATCTGGGGTGGGGTTGA
ACCTGGGTGCAGACCCCTCGGTACACGCGACTCCCTTGACGCAGCAGCTA
TTGGAAACGAATCCGGACCTTGCCAACGCTGGGGGTTTGCTGCTGACGCC
CGCGTCAATGGGGCAGTACTCGTGTGTGTACCACCAGCCCGCGGTGAACA
GCACGCAGGGGCGGCTGGACCCGCAGATGCTGGAGGAACTGAATTGGGCA
GTGTCACGGTCTAGCACCCCGGAGGGGCGCCAGCAGCACGAGCTGCAGCA
GCAGCAGCGGCGGCAACAGGAGATGCAGGAGCAGCAGCGGCAACTGCAAC
TGCAACTACATGTCCTGCAACTGCAGCAACAGCTACAGGCACAGGCCGGC
TACGAGGGCTTCTATGGATCAGCAACTGCAACTACATGTCCTGCAACTGC
AGCAACAGCTACAGGCACAGGCCGGCTACGAGGGCTTCTATGGATCAGGC
GTGCTCTCAGGGGCACCAGCGGCTCCGCAACTGCCCATGGACCCCCTCTC
TGCGGCGAGCGGCGGCACCGCCTCTGCACACGCTACTTGGGCTACGCACC
CAATGACCCCAAACAGCATGAGTGGGGGATTCATGGCGGGGGTGGTCACC
AGCCAAGCTGCAGGGGGTACCATAGCAGCCCAGGCCACAGGGGGTGCCAC
TGCGTGCTCTCAGGGGCACCAGCGGCTCCGCAACTGCCCATGGACCCCCT
CTCTGCGGCGAGCGGCGGCACCGCCTCTGCACACGCTACTTGGGCTACGC
ACCCAATGACCCCAAACAGCATGAGTGGGGGATTCATGGCGGGGGTGGTC
ACCAGCCAAGCTGCAGGGGGTACCATAGCAGCCCAGGCCACAGGGGGTGC
CACT
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