mRNA_S-ischiensis_contig78.19054.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19054.1
Unique NamemRNA_S-ischiensis_contig78.19054.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.710e-17
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 2 
Query: 1181 LSRGQRKRALKRSLLVKKNGLASLSRRATKPKAA-GRVDMETLQSSLDSVKDNVVASHSRRDTQKFG-------RVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQDRTGQKKTKK 1582
            LSRGQRKRA KR+ LV+K  L + +    K +AA G   M  L  +L    ++      +R   K         R++TNKGKR +   EL Q+ AVL N SF+RDP AAIQ H++ T+PV E++    ++ Q R G+KK KK
Sbjct:   31 LSRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLTLPVEEAAAAANTSGQTRAGRKKGKK 172
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BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.190e-12
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 2 
Query: 1184 SRGQRKRALKRSLLVKKNGLAS--LSRRATKPKAAGRVDMETLQSSLDSVKDNVVASHSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTI----PVTESSQRV-----TSAKQ------DRTGQKKTKKKTFRGKLAKMR 1615
            SRGQRKRALK++ L+KK GL S  + +R T         + T +  + S + ++ A  S      F RV +NKGKR L+T+E+GQ++AVL   SFQ+DP AAIQ HLR T     P+ +   R       SAK       +  G +K K K ++ + AKMR
Sbjct:   39 SRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPSVATDEKGIPS-RPSLAAKGSA-----FQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADCKARKPGKGKVSAKSVGQHAGETRGDRKPKAKPYKARNAKMR 193
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BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A7S3XU29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU29_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-8
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 2 
Query: 1181 LSRGQRKRALKRSLLVKKNGLASLSRRATKPKAAGRVDMETLQSSLDSVKD-----NVVASHSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESS 1528
            LSRGQRKRA +R   +KK  L + +      K+   +  + +  SL S+KD     +++AS   +  +   +VV NK K+ +   E+  +  VL +  F +DPIAAIQ+HLR ++P  + +
Sbjct:   74 LSRGQRKRAARRERFLKKMNLVNQA------KSVEELSKQGVLGSLGSIKDVLLNSDIIASSKTKAAKAPQKVVHNKAKKTVAAQEVQHLSLVLKHPQFMKDPIAAIQEHLRNSLPTEDGA 188
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BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A7S3PZY6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZY6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.540e-5
Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = 2 
Query: 1181 LSRGQRKRALKRSLLVKKNGLA-SLSRRATKPKAAGRVDMETLQSSLDSVKDNVVAS--------------HSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQDR 1558
            +SRGQRKR  KR   +++  +  S  +  T  +  GR+D       LD++KD + A+                 + +Q+     TNK K+DL   EL  M  VL + +FQ +P A +QQHL+ T+  +   Q +  AKQDR
Sbjct:   59 MSRGQRKRLAKREQYLRREKMVMSTLKLKTLEEQKGRLD------GLDAIKDALTATIVNKGRKSSAGAGADDTKTSQENEVTKTNKAKKDLAQKELTHMKLVLQHPTFQSNPFATMQQHLKNTLVQSAERQEIL-AKQDR 192
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZIC9_9STRA2.710e-1741.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8P4_ECTSI2.190e-1239.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XU29_HETAK3.570e-833.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PZY6_9STRA3.540e-532.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:34232..36355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog164328.Phyra81828
EggNOG free text desc.Ribosome biogenesis protein SLX9
EggNOG OGs2BP18@1,2S1QT@2759,3QFSR@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1857
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19054.1prot_S-ischiensis_contig78.19054.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 34468..34983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.745682-UTR-S-ischiensis_contig78:34231..344671622817240.745682-UTR-S-ischiensis_contig78:34231..34467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 34232..34467 -
1695740961.637178-UTR-S-ischiensis_contig78:34231..344671695740961.637178-UTR-S-ischiensis_contig78:34231..34467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 34232..34467 -
1622817240.7748377-UTR-S-ischiensis_contig78:34983..358661622817240.7748377-UTR-S-ischiensis_contig78:34983..35866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 34984..35866 -
1695740961.6599455-UTR-S-ischiensis_contig78:34983..358661695740961.6599455-UTR-S-ischiensis_contig78:34983..35866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 34984..35866 -
1622817240.787876-UTR-S-ischiensis_contig78:36133..363551622817240.787876-UTR-S-ischiensis_contig78:36133..36355Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 36134..36355 -
1695740961.6708174-UTR-S-ischiensis_contig78:36133..363551695740961.6708174-UTR-S-ischiensis_contig78:36133..36355Schizocladia ischiensis KU_0333UTRS-ischiensis_contig78 36134..36355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.7597485-CDS-S-ischiensis_contig78:34467..349831622817240.7597485-CDS-S-ischiensis_contig78:34467..34983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 34468..34983 -
1695740961.6502645-CDS-S-ischiensis_contig78:34467..349831695740961.6502645-CDS-S-ischiensis_contig78:34467..34983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 34468..34983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19054.1

>prot_S-ischiensis_contig78.19054.1 ID=prot_S-ischiensis_contig78.19054.1|Name=mRNA_S-ischiensis_contig78.19054.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MKEKKARRFRATTPAASSGQSKAGPLSRGQRKRALKRSLLVKKNGLASLS
RRATKPKAAGRVDMETLQSSLDSVKDNVVASHSRRDTQKFGRVVTNKGKR
DLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQD
RTGQKKTKKKTFRGKLAKMRK*
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mRNA from alignment at S-ischiensis_contig78:34232..36355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19054.1 ID=mRNA_S-ischiensis_contig78.19054.1|Name=mRNA_S-ischiensis_contig78.19054.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2124bp|location=Sequence derived from alignment at S-ischiensis_contig78:34232..36355- (Schizocladia ischiensis KU_0333)
GGAGGGAGGGCGAGGCGGCACTGCGCAGGCAAGAGGAAGGAACCCCGCGA
GACTGAACGTGATAAAAGGGAAAAATTGTCCCCTCACCTCGGCGCGCCAC
CAAAGGATAGCTGCGGGGCCACGAAGACGCTCGTCATCTTGAGGTCTACA
TCGCACCAGCCCTCGCGCTTGTTCCTTGTGTTGCACAGGATTTAGGTCGG
CCTCTGCAAGGTGCAGCGAAAGGTACGCAGTGCTATAGCTACATCGGGAA
TCCAGATGGCTAATCCGCCCACGGATTTACTACTGTAGGAACCGTGTATC
TGAGTGCCGTATACGCCGGACAGCCCTTGCGGGCCCTAGGTTCTGCCGCA
AAACCACTTTTTCAAAGGCATTTCCTTCGTGAAATATACAATAGAGGTTT
TGCACTGTCGCAGAGGTTTTGCGCCCCCTTCCCATTTTTTACTTTCGTGT
ATTTTGCCCCCCCCCCGGTGCCCCTTCGATCCTCTCCAGTGCAATATTAG
AGGACCATGAGGCACGGTGAAAAAGTGAAGAGCGCCAGTGGGCAATGCAA
AGACTACAACTATAGGAGCTTCAAGCACGAAGGCAAGTTAAAACCAAGAC
ACGTTTTTACTCAGGCACGGCGTCCCAAGTGGCCGATAGGCCAGAAGCTA
CGCCGCCGAGTCTACAGTGCATTCTTGGGTACCGCCATTTTCGTGCCTAT
CGTGAAAGTTTACTCTTGAGCTTGCCCCCCCTTTTGTATGTGAGCTCGAA
TGGCTGTGGGGCAGGGTGCTTCGCGCCCGCTTGCCCCCCCGGATCCGCCA
TTTGCGACGTGCGATCCTTGCCAGTGGTTTGCGTGTCGGAGGCATTTTGC
CCTCCGGAAGATGGTGTAGCAAACGGGCCCCGACCGGCCAATACAACTAA
GTTAGAGCTTTGGCAGGTCGTATCCTAGAGGTTTTGTCTCCGGAAGTTGA
TGTAGAAAACTCGGCGCCCGTTTTGTATATTTTGCATGCAAGGGCTCTCC
GGCGATTTCGGATGCTGCGCGCGCCGACCCGCATGCGCTCGCTCCACTCG
TTGTACAACAGTGTTCATGACCTGGCCAAGAGTGCGGGGGCAAGCGGCAA
CTTGTGAGTCCGGCTTTCTCAATCACCACGTTGGTACCTAATATGATCGT
CACGCTCGCTGAGTACAGGTACTCTACAAGTAGGGTGGTGGAATCGTATT
ACCAAGAGGGTGACACTACGAGTGCTACAGCAAGGCACGACGGCCGCAAC
TCCATTCGGCTGTATAGCACTGTGTACGACTTGACGTACTTCAAGCACTC
GGTACTTGACACCTGACAAGTTGCCCCCTCCCCCCCCGAAAAAATAACAA
TGATCTGTGGCACTGAAGGGGAATGAAGGAAAAAAAGGCGCGTCGATTCC
GGGCAACGACACCCGCAGCCTCAAGTGGTCAGTCCAAAGCTGGGCCGCTG
AGCCGGGGTCAGCGCAAACGTGCACTCAAGAGGTCTCTTCTTGTGAAGAA
GAACGGTTTGGCGTCATTGTCACGACGTGCTACGAAGCCGAAAGCTGCGG
GCCGGGTAGACATGGAGACATTGCAATCGTCTCTTGATAGCGTCAAAGAC
AATGTAGTGGCAAGTCATTCCAGGAGAGATACGCAGAAGTTTGGGCGAGT
TGTCACAAACAAGGGGAAGCGGGACCTTGTGACTGCTGAATTAGGTCAAA
TGGACGCAGTGCTGGGAAACGCATCTTTCCAAAGAGACCCAATTGCGGCT
ATACAGCAGCATCTCCGGTACACAATCCCAGTGACTGAAAGCAGCCAAAG
GGTGACCTCTGCCAAGCAGGATAGGACAGGACAAAAGAAAACAAAAAAGA
AAACGTTTCGCGGCAAGCTTGCAAAAATGAGGAAGTAGAAGTCAGCGTAG
CTGGAGGACTAAAGCAGCCAGTCGTGGTCATATGTCAGTGACAGTGGCTG
GGCAGACCCACCCTTATTTGGGCCCTCACACAGTACTTGGCAAGTAATAT
CACAATTGAAATTTCATGCCGTGCGCCGTGCATGCCAACGCTTCTGGCAC
AATCAAGAGCGTGGGATGAATTTCTGAGGAAGCGCAAAGATGGGCGCCAA
TACATTCTGGGCTGGGTATGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:34232..36355-

>mRNA_S-ischiensis_contig78.19054.1 ID=mRNA_S-ischiensis_contig78.19054.1|Name=mRNA_S-ischiensis_contig78.19054.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig78:34232..36355- (Schizocladia ischiensis KU_0333)
ATGAAGGAAAAAAAGGCGCGTCGATTCCGGGCAACGACACCCGCAGCCTC
AAGTGGTCAGTCCAAAGCTGGGCCGCTGAGCCGGGGTCAGCGCAAACGTG
CACTCAAGAGGTCTCTTCTTGTGAAGAAGAACGGTTTGGCGTCATTGTCA
CGACGTGCTACGAAGCCGAAAGCTGCGGGCCGGGTAGACATGGAGACATT
GCAATCGTCTCTTGATAGCGTCAAAGACAATGTAGTGGCAAGTCATTCCA
GGAGAGATACGCAGAAGTTTGGGCGAGTTGTCACAAACAAGGGGAAGCGG
GACCTTGTGACTGCTGAATTAGGTCAAATGGACGCAGTGCTGGGAAACGC
ATCTTTCCAAAGAGACCCAATTGCGGCTATACAGCAGCATCTCCGGTACA
CAATCCCAGTGACTGAAAGCAGCCAAAGGGTGACCTCTGCCAAGCAGGAT
AGGACAGGACAAAAGAAAACAAAAAAGAAAACGTTTCGCGGCAAGCTTGC
AAAAATGAGGAAGTAGATGAAGGAAAAAAAGGCGCGTCGATTCCGGGCAA
CGACACCCGCAGCCTCAAGTGGTCAGTCCAAAGCTGGGCCGCTGAGCCGG
GGTCAGCGCAAACGTGCACTCAAGAGGTCTCTTCTTGTGAAGAAGAACGG
TTTGGCGTCATTGTCACGACGTGCTACGAAGCCGAAAGCTGCGGGCCGGG
TAGACATGGAGACATTGCAATCGTCTCTTGATAGCGTCAAAGACAATGTA
GTGGCAAGTCATTCCAGGAGAGATACGCAGAAGTTTGGGCGAGTTGTCAC
AAACAAGGGGAAGCGGGACCTTGTGACTGCTGAATTAGGTCAAATGGACG
CAGTGCTGGGAAACGCATCTTTCCAAAGAGACCCAATTGCGGCTATACAG
CAGCATCTCCGGTACACAATCCCAGTGACTGAAAGCAGCCAAAGGGTGAC
CTCTGCCAAGCAGGATAGGACAGGACAAAAGAAAACAAAAAAGAAAACGT
TTCGCGGCAAGCTTGCAAAAATGAGGAAGTAG
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