mRNA_S-ischiensis_contig77.19049.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig77.19049.1
Unique NamemRNA_S-ischiensis_contig77.19049.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.360e-27
Identity = 80/241 (33.20%), Postives = 115/241 (47.72%), Query Frame = 1 
Query:   46 MDPLAEMPNPNEVGAMLDSAIMAREFKRAIRICEEVEI--------EDHAAGDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVPCAAASSGASGAAGPAXXXXXXXXXXXXXXAGPATREAYLEKMAQHISFLERQG 744
            MDP  +  + + +   +++ +  ++F+ A+  CEE+EI        + H     +    L+ L    DD++NARHLW+RLP +AK    G +  ALWEVGK LW RD + AQ  LRD  W A L    A     V  RQL +I +A+  +PL  V  +L    + AE+AC + GW +  T + + V P                               PA    YL+KMA HI+FLERQ 
Sbjct:    1 MDP--QGTDSDTIRKKIEALVAKKDFRAAVVKCEELEILTASTPFGQQHQDAANVHLALLLAL----DDVNNARHLWRRLPAAAKAA--GGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATAE-KAVKP---------------------SVRLIPDDTIPAATPDYLQKMANHIAFLERQS 211
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.850e-21
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:   88 AMLDSAIMAREFKRAIRICEEVEIEDHAAGD----PMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGW 546
            A + S++++  +  A R+CEE+E+E  +  +    P  + R +++Y+I +D+DNARHLW+R+    K    G +L A WEVGK LW R+ + A   L+   W A L  LA A  EAV   +  L+ +AY +V ++     LG D  GA   CT   W
Sbjct:    3 AAVTSSVISGNYAAAARLCEELELETCSTPNTDAAPARYARHIMVYMILNDLDNARHLWRRIDEGIKAG--GSELEATWEVGKLLWKREISAAYAALQ-RTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALGMDEAGALAFCTARNW 156
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A2D0QI16_ICTPU (COP9 signalosome complex subunit 8 n=7 Tax=Characiphysae TaxID=186628 RepID=A0A2D0QI16_ICTPU)

HSP 1 Score: 94.4 bits (233), Expect = 1.120e-18
Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = 1 
Query:  100 SAIMAREFKRAIRICEEVEIEDHAA-GDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            + ++   +++ +  CE  E+E       P ++++L+VLY++ +D++NAR+LWKR+P + KT     +L A+W VG+C+W RD  G    +    W   ++ +  + RE+  RR   L+++AY S+        +G   + A +     GW  +   +ARM++P
Sbjct:    4 AVMLGEHYEKLLEQCETQELEAPGGIATPQVYSQLLVLYLLHNDMNNARYLWKRIPQAIKTAHP--ELAAIWAVGQCIWQRDFPGIYSAIAAYQWSEPILPVMESLRESTRRRAYGLVAQAYTSISADDFASFVGYSVEEAVKGVISHGW--QADPNARMILP 162
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A6P8RD46_GEOSA (COP9 signalosome complex subunit 8 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RD46_GEOSA)

HSP 1 Score: 94.0 bits (232), Expect = 1.610e-18
Identity = 49/156 (31.41%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:  121 FKRAIRICEEVEIEDHAA-GDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            FK+ +  CE+ E+E       P ++ RL+ LY++ +D+DNAR+LWKR+P + ++     +L  +W VG+ +W RD  G    +  + W  ++ S+  A ++A  RR  +L+S+AY S+        +G   + A +   E GW  +     RMV+P
Sbjct:   13 FKKLLEQCEDQELEAPGGIATPQVYGRLLALYLLHNDMDNARYLWKRIPPAIRSANS--ELGGIWSVGQRIWQRDYPGIYTTINAQLWSENIQSIMEALKDATRRRAFELVSQAYTSISADDFAAFVGLPVEDAVKGVLEQGW--QADSATRMVMP 164
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A7S2SPW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.550e-18
Identity = 72/196 (36.73%), Postives = 100/196 (51.02%), Query Frame = 1 
Query:   10 GLRSQGLASHKGMDPLAEMPNPNEVGAMLDSAIMAREFKRAIRICEEVEIEDHAAGD-----PMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNR-DAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQG-AERACTELGWALRGTGDARM 576
            GLR +G  S        E+  P E   ML+  + A +F+ A  I EE+E+ D  A       P+++ + + LY+I +D+ NARHLW+R+  S KT   G +LV +  V   LW R D  GA  LLR E W   L  LA A R+ + +RQL L  +AY SV L+     LG  +      ACT  GW +   G  R+
Sbjct:   17 GLRWKGRRS-------MELEAPLE--GMLEEKLRAGDFQAARPIIEEIELRDADAPSTDPRIPIVYAKQLFLYLILNDMHNARHLWRRIDDSCKTD--GSELVKVHAVASLLWQRSDIPGAFNLLRGE-WSETLKPLATALRDGLQKRQLSLFEKAYTSVTLSTATAALGFTSDADTAAACTAQGWHVDEAGVIRV 200
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A822A0Y9_9NEOB (COP9 signalosome complex subunit 8 n=3 Tax=Hyloidea TaxID=8417 RepID=A0A822A0Y9_9NEOB)

HSP 1 Score: 92.8 bits (229), Expect = 4.080e-18
Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 1 
Query:  103 AIMARE---FKRAIRICEEVEIE-DHAAGDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            A+MA     ++R +  CEE E+E       P ++++L+VLY++ +D++NAR+LWKR+P + +T     ++  +WEVG+ +W RD       +    W  ++  +  A R+A  RR   L+++AY S+    +   +G   + A +   E GW    T   RMV+P
Sbjct:    4 AVMAENPVSYQRLLEQCEEQELEAPGGVATPQVYSQLLVLYLLHNDMNNARYLWKRIPPAVRTSSP--EIGWIWEVGQRIWQRDFPAIYSSIAAHQWSENIQPIIEAVRDATRRRAFGLVAQAYTSISADDLAAFVGLSVEDAVKGVVEQGWQADST--TRMVMP 164
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A3B3SKY8_9TELE (COP9 signalosome complex subunit 8 n=5 Tax=Teleostei TaxID=32443 RepID=A0A3B3SKY8_9TELE)

HSP 1 Score: 91.7 bits (226), Expect = 9.870e-18
Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = 1 
Query:   94 LDSAIMARE-FKRAIRICEEVEIE-DHAAGDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            + +A+M  E + + +  CE  E+E       P ++ +L+ LY++ +D++NAR+LWKR+P + KT     +L+A+W VG+ +W RD  G    +    W   +  +  A RE+  RR   L+++AY S+        +G     A R     GW  +   + RMV+P
Sbjct:    1 MPAAVMTSENYDKLLEQCEVQELEAPGGVATPQVYAQLLALYLLHNDMNNARYLWKRIPQAIKTANP--ELIAIWAVGQRIWQRDFPGIYSSIAAHQWSESIQPVMEALRESTRRRAFVLVAQAYTSITAEDFAAFVGHSVDEAVRGAVAQGW--QADPNTRMVIP 162
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: UPI001AAC6CF6 (COP9 signalosome complex subunit 8 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC6CF6)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-17
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 1 
Query:  103 AIMARE---FKRAIRICEEVEIE-DHAAGDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            A+MA     ++R +  CEE E+E       P ++T+L+VLY++ +D++NAR+LWKR+P   K+     ++  +W+VG+ +W RD  G    +    W  ++  +  A R+A  RR   L+S+AY S+    +   +G   + A +   E GW  +     RMV+P
Sbjct:    4 AVMAENPVCYQRLLEQCEEQELEAPGGVATPNVYTQLLVLYLLHNDMNNARYLWKRIPQPVKSANA--EIGWIWDVGQKIWQRDFPGIYTAIAAHQWSENIQPVMEAVRDATRRRAFVLVSQAYTSICADDLAAFVGLPVEEAVKGVLEQGW--QADSATRMVMP 164
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A653DUZ6_CALMS (CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653DUZ6_CALMS)

HSP 1 Score: 91.3 bits (225), Expect = 1.220e-17
Identity = 57/204 (27.94%), Postives = 96/204 (47.06%), Query Frame = 1 
Query:  136 RICEEVEIEDHAAGD----PMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVPCAAASSGASGAAGPAXXXXXXXXXXXXXXAGPATREAYLEKMAQHISFLE 735
            ++ E++E ++  A      P ++ +L+ +Y+ ++D+ NA++LWKR+P S KT     +L  +W VG+C+W RD +G  K L +  W   +V +    +E++  R + LIS+AY S+ +  V  + G        AC E GW+     D  M+ P                             AG  + E  L K+   +SFLE
Sbjct:    9 KLAEDLEKQELEAPSGITTPQVYEQLLAIYLYQNDLCNAKYLWKRIPESVKTSTP--ELKNIWTVGQCMWKRDFSGIYKALNEVTWSDTVVDIMKQVQESIRNRAVDLISQAYSSITIDTVCAMTGLTPDICIPACVEKGWSFEA--DTNMIHP----------------------VRQVVEPAGQTSSEDQLYKLTDFVSFLE 186
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BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Match: A0A1S3NVB6_SALSA (COP9 signalosome complex subunit 8 n=19 Tax=Salmonidae TaxID=8015 RepID=A0A1S3NVB6_SALSA)

HSP 1 Score: 90.9 bits (224), Expect = 2.210e-17
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 1 
Query:  100 SAIMAREFKRAIRICEEVEIEDHAA-GDPMLWTRLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDAAGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDVLGEDTQGAERACTELGWALRGTGDARMVVP 585
            + IM   + + +  CE  E+E       P ++ +L+VLY++ +D++NAR+LWKR+P + K+     +L ALW VG+ +W RD  G    +    W  +++ +  A RE   RR   L+++AY S+        +G   + A +     GW  +     RMV+P
Sbjct:   12 AVIMGENYDKLLEQCETQELEAPGGIATPQVYAQLLVLYLLHNDMNNARYLWKRIPQAIKSANP--ELTALWAVGQRIWQRDFPGIYSAIAAHQWSENILPVMEALRETTRRRAYGLVAQAYTSIMAEDFAAFVGYSVEEAVKGVVSQGW--QADPATRMVMP 170
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig77.19049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMY2_ECTSI3.360e-2733.20CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=... [more]
A0A7S2FNN9_9STRA2.850e-2136.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D0QI16_ICTPU1.120e-1828.83COP9 signalosome complex subunit 8 n=7 Tax=Characi... [more]
A0A6P8RD46_GEOSA1.610e-1831.41COP9 signalosome complex subunit 8 n=5 Tax=Gymnoph... [more]
A0A7S2SPW3_9STRA2.550e-1836.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A822A0Y9_9NEOB4.080e-1830.91COP9 signalosome complex subunit 8 n=3 Tax=Hyloide... [more]
A0A3B3SKY8_9TELE9.870e-1830.12COP9 signalosome complex subunit 8 n=5 Tax=Teleost... [more]
UPI001AAC6CF61.030e-1731.52COP9 signalosome complex subunit 8 n=1 Tax=Rana te... [more]
A0A653DUZ6_CALMS1.220e-1727.94CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=... [more]
A0A1S3NVB6_SALSA2.210e-1730.06COP9 signalosome complex subunit 8 n=19 Tax=Salmon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig77contigS-ischiensis_contig77:688001..693489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D8LMY2
Preferred nameCOPS8
KEGG koko:K08244,ko:K10655,ko:K12181
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001101,GO:0001654,GO:0001745,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007250,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008237,GO:0008285,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009753,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010387,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030182,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0060625,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0098542,GO:0140096,GO:1901222,GO:1901224,GO:1901360,GO:1901564,GO:1901700,GO:1902531,GO:1902533,GO:1903320
EggNOG free text desc.COP9 signalosome assembly
EggNOG OGsKOG4414@1,KOG4414@2759
EC2.3.2.27,2.7.9.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCOP9 signalosome, subunit CSN8
Ec32 orthologEc-02_004100.1
Exons5
Model size1588
Cds size708
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817236.439108-UTR-S-ischiensis_contig77:688000..6880451622817236.439108-UTR-S-ischiensis_contig77:688000..688045Schizocladia ischiensis KU_0333UTRS-ischiensis_contig77 688001..688045 +
1695740958.4558206-UTR-S-ischiensis_contig77:688000..6880451695740958.4558206-UTR-S-ischiensis_contig77:688000..688045Schizocladia ischiensis KU_0333UTRS-ischiensis_contig77 688001..688045 +
1622817236.524759-UTR-S-ischiensis_contig77:692654..6934891622817236.524759-UTR-S-ischiensis_contig77:692654..693489Schizocladia ischiensis KU_0333UTRS-ischiensis_contig77 692655..693489 +
1695740958.5227952-UTR-S-ischiensis_contig77:692654..6934891695740958.5227952-UTR-S-ischiensis_contig77:692654..693489Schizocladia ischiensis KU_0333UTRS-ischiensis_contig77 692655..693489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817236.4547372-CDS-S-ischiensis_contig77:688045..6881681622817236.4547372-CDS-S-ischiensis_contig77:688045..688168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 688046..688168 +
1695740958.4699745-CDS-S-ischiensis_contig77:688045..6881681695740958.4699745-CDS-S-ischiensis_contig77:688045..688168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 688046..688168 +
1622817236.4700205-CDS-S-ischiensis_contig77:688397..6884591622817236.4700205-CDS-S-ischiensis_contig77:688397..688459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 688398..688459 +
1695740958.4807663-CDS-S-ischiensis_contig77:688397..6884591695740958.4807663-CDS-S-ischiensis_contig77:688397..688459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 688398..688459 +
1622817236.4815602-CDS-S-ischiensis_contig77:689699..6898071622817236.4815602-CDS-S-ischiensis_contig77:689699..689807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 689700..689807 +
1695740958.4906323-CDS-S-ischiensis_contig77:689699..6898071695740958.4906323-CDS-S-ischiensis_contig77:689699..689807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 689700..689807 +
1622817236.4951413-CDS-S-ischiensis_contig77:690868..6910561622817236.4951413-CDS-S-ischiensis_contig77:690868..691056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 690869..691056 +
1695740958.5008981-CDS-S-ischiensis_contig77:690868..6910561695740958.5008981-CDS-S-ischiensis_contig77:690868..691056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 690869..691056 +
1622817236.5099669-CDS-S-ischiensis_contig77:692427..6926541622817236.5099669-CDS-S-ischiensis_contig77:692427..692654Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 692428..692654 +
1695740958.51224-CDS-S-ischiensis_contig77:692427..6926541695740958.51224-CDS-S-ischiensis_contig77:692427..692654Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 692428..692654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig77.19049.1prot_S-ischiensis_contig77.19049.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig77 688046..692654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig77.19049.1

>prot_S-ischiensis_contig77.19049.1 ID=prot_S-ischiensis_contig77.19049.1|Name=mRNA_S-ischiensis_contig77.19049.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
MDPLAEMPNPNEVGAMLDSAIMAREFKRAIRICEEVEIEDHAAGDPMLWT
RLMVLYIIEDDIDNARHLWKRLPLSAKTPKRGRDLVALWEVGKCLWNRDA
AGAQKLLRDEPWGAHLVSLAAAAREAVGRRQLKLISRAYHSVPLARVKDV
LGEDTQGAERACTELGWALRGTGDARMVVPCAAASSGASGAAGPAPADGS
GLGPGGGLGAGPATREAYLEKMAQHISFLERQGVS*
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mRNA from alignment at S-ischiensis_contig77:688001..693489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig77.19049.1 ID=mRNA_S-ischiensis_contig77.19049.1|Name=mRNA_S-ischiensis_contig77.19049.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5489bp|location=Sequence derived from alignment at S-ischiensis_contig77:688001..693489+ (Schizocladia ischiensis KU_0333)
CGGGAGCGGGGGTTGCGAAGCCAAGGCTTGGCAAGTCACAAGGGAATGGA
TCCCTTGGCGGAGATGCCAAATCCCAACGAAGTGGGTGCAATGCTGGATT
CGGCGATCATGGCACGAGAATTCAAGCGTGCCATCCGCATCTGCGAGGAG
GTGGAGATAGAAGACCATGTGAGAGCTAGGACGCACTGCGGCGTACACTG
TGTCGTTTTGCCACCAATTCCTCGGTTGGACTTGCGGTCGCAACCACTGT
TACCCTGCTAGTTATTTGAGCGTTTCTTTTGAGGGCCCTTTCATTTGCTT
GGTGCTCACACCGTCCTTTCTGCTCGGCTTGCGTCTGCCCGGCCTGCTGC
CCTGCCCCCGCCTCCCCGCCGTGGTTAAACCCCCTCCGGAAAAGCAGGCG
GCGGGGGACCCCATGTTGTGGACGCGACTGATGGTGTTATACATAATTGA
GGACGACATGTGAGTGTGCTATTTAGCCTGGGGGCGCCTAAGCACTCGCT
GTGCATACCCTGCTGATATGAGGGACACGAGTGTGGTCCGGCGTCATGAG
TGTGCCGTCCGGCGTCATGAGTGTGCCGTGGGGTGCCAAGTCGCGAATGT
TATTACCAACGATAGTTTAGTGCCTTTGGGCGCCGCTGTTGCCCTCTCTC
CCACCGCTCAGCGGGCCTGTGCTCGCGTGCTTCCTAAGTACTTCCCCCGT
TCACATTGCCGGAAGTGCTCGGCGTTGCCCCGACTCACTTGAGAAACCAG
TCTGTGTACTCATGTCTCTGTGCATGCCCTGGATCCGAGCGATCCTCGTC
TTTGCTCCTTCTTGTGGATTGCTGGCCAGCTGTAGCTTTCGCCGTTGGCC
ACGCGTCCTATTGGACGGAACACGCCGAGAAGCCTGTGGAGTGCACCCCC
TATGGGGCACGATTGCCCCCTGGCGGGGGGTCTCTCGGCCAGCCTGCAGA
AAATCTTCGGAGACGAAATGACCCCTCCAAGGGCAATCTTTGTCTCCGTC
TCCTCCCCAACCCCCCGTCCGGCTTCTCCCCCCCCCCCTCTCTGGGTGTG
GGTGTGCCTACGTGTGCATGCGTGTGCATCTCTGTGCCCCCCCCCGCCCC
CCGCTATCTGTTCTCTCTTTGTCCCCTCCCCCTCTCTTCCCCCTTTCCCC
CTCCCCTCCCCAACAGCAGAGGACACAGTGCTCCGTCCTGTGCGTTCACC
CCTGTGGGACGTGTGTTCAATGGCCATACGGCTATCGTACCAGTGATGGA
ATATCTACTGTAAGCAAACCAACCTATTTATTGACAATACTGATCTACTT
CGTATGAGTATATATATATATATATATATCGACAGTCGATATTCAATGGT
TTGACCCACACCAAATCCAAGTAGTGGGTAGGGCCACCCACAAAATCATT
CGAGCCCGATTAACTACCTACCAAGTGCTGATCGATATTCCCTCACTGAT
GGCTACGGCAGGCAACTCATGCCCCCGCCCTCCCTCCCTGACGCCCACCA
GCGACAACGCCAGACACTTGTGGAAGAGGCTGCCAGGGAGCGCAAATTAG
AGGTAATTAGGGGTACAAGCCCTGAAATGAAGGCTATTTAGGCCCTAATT
GACCTCCAGGTACCAACCATGCTCCCTCCCTCACTCCAACAGCGCAGTCA
ATCTCACACACGTGCGATTGTACCTCGTTGCAATTTATACGAATCACAGC
GACAACGCCAGGCACTTGTGGAAGAGGCTGCCCTTGAGCGCCAAGACCCC
CAAGCGCGGGCGGGACCTGGTGGCCCTCTGGGAGGTCGGGAAATGTCTCT
GGAACCGGTGAGAGAGAGTGCACGGAAGGGCTAAACTAGACGCAGCCTGG
CTTAGAAGGTTGGGAAATGCCTCTGGAACCGGTGAGGGTGCGCGGAAGTG
CTGAACGCGGCCGGGCTCGGCTGCCAGAAAGCTTTGCTTGCTTTGGTTGT
CGTGCAGCCGTTGGCATCACGGGACTCTGGGCTTGGTAGGCCGAGACGGA
GCAACAGCTATGGGCGCTGTATGTGGTGGCGTTGTGGTGTAGTTAGTGGT
CTCGGGACTATGGCAAGCACAACGTGAGTACATATGCACTTCGAAGTATA
CATATATATATACATTTCGGGCTATTCCGTCTTGTTTCGATATTCGACAT
GTATGTATGTCGCCGCCTGCTCCGCCTGCTCCGTCTCGACCGAGGCGCGT
GGTCAACTGTCTCGGGACCATGGCAGGCACCACGTGAGTACATATATATA
TATATACCATGTACTGTATGTCGCCGCCGGGCCACAGGGACGCGGCAGGG
GCACAGAAGTATATACATTTCGGGCTAATCCATCTTGTGTCGATATTTGA
CATGTAACAGGGACGCGGCAGGGGCGCAGAAGCTCCTGCGGGACGATGTA
CTGGTACTCGTATACGAGTATACTCTATATTTTGGTCTGATCCATCTTAT
ATATATATGTACTCATCGGTTTGTCTTGTGACACAGCCGTGCGTCCTACG
TCGAAACTTTATAAAGTACATATTTCGTTCTATTATCCACCTTGTTTAGA
TGTTCGACATGTGTGTGGTACGTCGCCGCTGGGCCACAGGGACGCGGCAG
GGGCGCAGAAGCTCCCTCGGGACGAGGTATACTTTGAAGTACTTCGAAGT
GCTTCGTATTTCGCATGTATATACTTGGAAGTACATTTCGGTCTAATCGA
TGTTGGTTCGATGTTTGTCGTGTATGTCGCCGCCGCCGCGCCGCAGGAGG
GATGAGCCCTGGGGCGCGCACCTGGTAGTATGTACTCGTACTGGTACTGC
TTCGAAGTTCATATGCAAATATACATTTCGATCTAATCCATCTTGTTTCG
ATATTCGACATGTAACAGGGATGCGGCAGGGGCGCAGAAGCTCCTGCGGG
ACGAGCCCTGGGGCGCGCACCTGGTGTCCCTGGCCGCGGCGGCACGAGAA
GCCGTGGGTCGGCGGCAGCTAAAGCTGATATCGCGGGCGTACCACAGCGT
CCCGCTGGCGCGGGTGAAAGACGTGCTCGGGGAGGACACACAGGGGGCAG
AGCGGGGTGAGTGAACCGTGTACATAGCCTCCCAACTACTTGGGGTATCC
TCAAACTCAATCCGCTAGCTACTTGGGTTCTCGAAACTCAAGTCTACTAA
CTACTTGAGTGTCCCGAAACTCGGTCTCATAGCCACTTGGGTTCTCGAAA
CTCAAGTCTCTTAGCTACGCCGTGTACAAGTACGAGTACAGGTTACAAGT
ACTTCCAGCAAGCACTTGTTGGTGTCTTTCCTTCGTATTGCAAGAGGATA
GGCCGATTTTTTGCGTGTGCGTTGTTGGCGCCAAGTAGATATCGAAGTGC
AGGCGGCCGGCGTGCTCGGGGAGGAGGACACACGGGGCCGAGCGAGGTGA
GCCGTGTATATGTATATAGGGCTCTATATGTACTTCGAAGTACTCACGTT
GTGCTTGCCGTAGTCCCGAGACCATTTACCACTGGGCGAGGTATGTGTAA
TGAGGAGACCGCCGCTTTAAGTATACCAGTGTACGGACAGAGAGAGACTC
TGTGTACACCCCCCCCCCAGCATCTGGGGGACGGGCGGCAGTGATGGAAT
ATCGATCAGTAGATAGTTATCGGGCTCAACCGATTATGTGGGTGGCGTTA
CTAGCTACTTGGATTAAATGTGGGTCAGACTATCGATAGATACATAGAGC
CCTTTCCCCGCGCCTTCGCTTTCATTCTTTATTTTTCCTTCTCTTCTTGC
CCTGCGAGGGAAGGAAGGGCTTCCGTTGAGTCCTGTTTTGGGACGAGCCT
TTTGGCACGGGGCCTGGAACTCGCCGCTCTTCTACCACTCAAATAGATCA
GTACTGTCATGAATATGGTAGCTTGATTTGCTTAGATGTTCCATCACTGC
CGGGCGGGAGACCGCGGCTGTGTTTGTGTGGCCATCGTAACGGCAGACTG
AAATACTGTGGACCCGCTGTTCGTTTTTTGCCACAACACACACAAGCGAG
TGGTAAAGAAGAGGTGTCTCTACTCACGTTACCTCGCCCCCCCCCACACC
CGGAAGCCCTTCCTCTCACTCGCGGTTTGTTGTTGCGGGCTCAGTGCGAC
TCGAAAAGAAAATGCTGCATGCATACTCGTGGCACCTGGAAGCAGTTGTT
AAAACCGGGTCGGGCGCTGTTCCCATGCGCTCAGTGCGCTGTGGTTCACC
CGACACGTGCCCTGACTTTGTGACCACCACCCCCACTGCTGCCGCCGCCG
CCGTCGCTGCTGCTGCGGATGCTGCGGATGCTGCTGCCGCGGATGTTGGT
GCTGCTGCCGCCGCCATGGCCGCAACCGCCACCGCGGCTGCAAAACCACC
GCCACCACCGCCACTGCTACTACAACCCCACCACCACCGCCATGGCCGCC
TCACCGCCTCACCGCCAACAACCTTAGCGTGTACGGAGCTCGGCTGGGCG
TTGCGCGGGACCGGGGACGCCCGCATGGTGGTCCCTTGCGCCGCCGCCTC
CTCCGGCGCGAGCGGCGCCGCCGGCCCAGCCCCGGCGGACGGAAGCGGGC
TGGGGCCGGGGGGGGGCTTGGGGGCGGGCCCGGCGACCCGCGAGGCGTAC
CTGGAGAAGATGGCGCAGCACATCTCTTTCTTGGAGCGGCAGGGGGTGTC
TTGAAGATTTCCAGTACAATGTACGCGGCTCGAGAAATGTTCATCTCGAA
TAATCTCACGAGGTCTCTGTCCTGAGGGAAGTGCCCGGATCTGTTTCGGC
GGAGTTTTGTGAGCAGCCCCCAGCATATCTCTTTCTTGGAGCGGCAGGGG
TTATCTTGATTGAATCCAGTACTTGTGCGCGTCTCGAGAAACATTTCGAG
TGATCTCACGAGGTGTTGAGGGAGGAGTTTCGGATCTGTATCTTGCCTGG
ACAAGATGGCGCGGCACATCTGTTTCTTGGAGCGGCAGGGGGTGTCTTGA
GTCCAGTAGATACGAGTCTCGAGCCTGAGAAACATTGAGTTCACGAGGTG
TCCTGAGGGAAGTGCCTGGGTCTGTTTCAGTGTCTTGAATCCAGTACGCG
TCTCGAGAAACATCTCGAGGTCACGAGGTGTCCTCAGGGCAGGGAAGTGC
CCGGTTCTGTTTGGGTGTCTTGAATCCAATGTTCTATGCGTCTCGAGAAA
CATCGTCTCGAGTTCAAGTTCACGAATTGTCCTGAGGGACGAGTTTTGGG
TCTGTTTCGTGCCTGGAGAAGATGGCCCGGCACACTTTTTCTTGCCGCGG
CAGGGGGTGTCTTGAGTCCAGTACTCGAGTACACGTCTCGAGAAATGCTC
ATCTCGAGTGAACTCACGAGGTGTCCCAAGGGAAGTTCCCGGGTCTTTTT
CGGGGTCTTGAATCCGGTGCTCTATACGTCTCGAGAAACATCTCTCGAGA
GTGCACGTGTCCTGAGGGAAGGGAAGTGCCCGGTTCTGTCTTGAATCCAG
TAATCTACGCGTCTCGAGAACTTCTCGAGTCCACGAGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig77:688001..693489+

>mRNA_S-ischiensis_contig77.19049.1 ID=mRNA_S-ischiensis_contig77.19049.1|Name=mRNA_S-ischiensis_contig77.19049.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig77:688001..693489+ (Schizocladia ischiensis KU_0333)
ATGGATCCCTTGGCGGAGATGCCAAATCCCAACGAAGTGGGTGCAATGCT
GGATTCGGCGATCATGGCACGAGAATTCAAGCGTGCCATCCGCATCTGCG
AGGAGGTGGAGATAGAAGACCATATGGATCCCTTGGCGGAGATGCCAAAT
CCCAACGAAGTGGGTGCAATGCTGGATTCGGCGATCATGGCACGAGAATT
CAAGCGTGCCATCCGCATCTGCGAGGAGGTGGAGATAGAAGACCATGCGG
CGGGGGACCCCATGTTGTGGACGCGACTGATGGTGTTATACATAATTGAG
GACGACATGCGGCGGGGGACCCCATGTTGTGGACGCGACTGATGGTGTTA
TACATAATTGAGGACGACATCGACAACGCCAGGCACTTGTGGAAGAGGCT
GCCCTTGAGCGCCAAGACCCCCAAGCGCGGGCGGGACCTGGTGGCCCTCT
GGGAGGTCGGGAAATGTCTCTGGAACCGCGACAACGCCAGGCACTTGTGG
AAGAGGCTGCCCTTGAGCGCCAAGACCCCCAAGCGCGGGCGGGACCTGGT
GGCCCTCTGGGAGGTCGGGAAATGTCTCTGGAACCGGGATGCGGCAGGGG
CGCAGAAGCTCCTGCGGGACGAGCCCTGGGGCGCGCACCTGGTGTCCCTG
GCCGCGGCGGCACGAGAAGCCGTGGGTCGGCGGCAGCTAAAGCTGATATC
GCGGGCGTACCACAGCGTCCCGCTGGCGCGGGTGAAAGACGTGCTCGGGG
AGGACACACAGGGGGCAGAGCGGGGGATGCGGCAGGGGCGCAGAAGCTCC
TGCGGGACGAGCCCTGGGGCGCGCACCTGGTGTCCCTGGCCGCGGCGGCA
CGAGAAGCCGTGGGTCGGCGGCAGCTAAAGCTGATATCGCGGGCGTACCA
CAGCGTCCCGCTGGCGCGGGTGAAAGACGTGCTCGGGGAGGACACACAGG
GGGCAGAGCGGGCGTGTACGGAGCTCGGCTGGGCGTTGCGCGGGACCGGG
GACGCCCGCATGGTGGTCCCTTGCGCCGCCGCCTCCTCCGGCGCGAGCGG
CGCCGCCGGCCCAGCCCCGGCGGACGGAAGCGGGCTGGGGCCGGGGGGGG
GCTTGGGGGCGGGCCCGGCGACCCGCGAGGCGTACCTGGAGAAGATGGCG
CAGCACATCTCTTTCTTGGAGCGGCAGGGGGTGTCTTGACGTGTACGGAG
CTCGGCTGGGCGTTGCGCGGGACCGGGGACGCCCGCATGGTGGTCCCTTG
CGCCGCCGCCTCCTCCGGCGCGAGCGGCGCCGCCGGCCCAGCCCCGGCGG
ACGGAAGCGGGCTGGGGCCGGGGGGGGGCTTGGGGGCGGGCCCGGCGACC
CGCGAGGCGTACCTGGAGAAGATGGCGCAGCACATCTCTTTCTTGGAGCG
GCAGGGGGTGTCTTGA
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