mRNA_S-ischiensis_contig74.18748.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig74.18748.1
Unique NamemRNA_S-ischiensis_contig74.18748.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig74.18748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig74contigS-ischiensis_contig74:144160..144841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig74.18748.1prot_S-ischiensis_contig74.18748.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig74 144160..144814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817208.4633527-CDS-S-ischiensis_contig74:144159..1444221622817208.4633527-CDS-S-ischiensis_contig74:144159..144422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig74 144160..144422 -
1695740937.0546932-CDS-S-ischiensis_contig74:144159..1444221695740937.0546932-CDS-S-ischiensis_contig74:144159..144422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig74 144160..144422 -
1622817208.4761543-CDS-S-ischiensis_contig74:144711..1448141622817208.4761543-CDS-S-ischiensis_contig74:144711..144814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig74 144712..144814 -
1695740937.0657527-CDS-S-ischiensis_contig74:144711..1448141695740937.0657527-CDS-S-ischiensis_contig74:144711..144814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig74 144712..144814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817208.4889235-UTR-S-ischiensis_contig74:144814..1448411622817208.4889235-UTR-S-ischiensis_contig74:144814..144841Schizocladia ischiensis KU_0333UTRS-ischiensis_contig74 144815..144841 -
1695740937.0793562-UTR-S-ischiensis_contig74:144814..1448411695740937.0793562-UTR-S-ischiensis_contig74:144814..144841Schizocladia ischiensis KU_0333UTRS-ischiensis_contig74 144815..144841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig74.18748.1

>prot_S-ischiensis_contig74.18748.1 ID=prot_S-ischiensis_contig74.18748.1|Name=mRNA_S-ischiensis_contig74.18748.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MTPSLPNDGDHETYDADFEDPPSPAAPGGDADAAGRKKLPGGGLVAAAAA
VQREEASSAQALAARRDPPTTRRGSASGSAGSPTVAGLAAGDRVEARFDG
GSAFYPGTIVAVAASGGGFDIR
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mRNA from alignment at S-ischiensis_contig74:144160..144841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig74.18748.1 ID=mRNA_S-ischiensis_contig74.18748.1|Name=mRNA_S-ischiensis_contig74.18748.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=682bp|location=Sequence derived from alignment at S-ischiensis_contig74:144160..144841- (Schizocladia ischiensis KU_0333)
TGGTGGTGTTGGCGTTTCGCGTAAAGCATGACGCCGAGCCTGCCTAACGA
CGGCGATCACGAGACATACGACGCCGACTTCGAAGATCCCCCATCCCCGG
CAGCTCCGGGCGGGGATGCGGATGCCGCAGGCGAGAAGTCTTATCTTTGC
TCCAGGGCACACCGAAAGATGTTCAAGGATACTTCGAAGTACTCTGCGTT
TTGCAAGGCCCATGCGGTGTGGGCGTCGCGGGTGGGTGCTTTCACGCACC
CCCCAAGGTGTAAGCACCGTCCGTACCATGTCTGGGCACCGGTCTGTAAC
GTGTAGAAGCGGGCTCGAGCTACAGCTGACCTGCTTGCTGGCGGCGAAAA
GGTAACGCCGCTGCACTGGCTAATCACTCCAAACCATGACTGTTGTAACC
GCCAAACACGACTCAACAGGGCGCAAGAAACTCCCTGGCGGCGGCCTCGT
CGCGGCGGCCGCGGCCGTCCAACGCGAGGAGGCCAGCAGCGCCCAAGCAC
TTGCAGCTCGGCGCGACCCACCCACGACAAGGCGGGGGAGCGCAAGCGGC
TCTGCGGGCAGCCCTACAGTTGCAGGGCTTGCAGCTGGGGACCGCGTGGA
GGCCCGCTTCGACGGCGGGTCGGCCTTCTACCCCGGCACGATCGTGGCGG
TGGCGGCCTCGGGCGGGGGGTTTGACATCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig74:144160..144841-

>mRNA_S-ischiensis_contig74.18748.1 ID=mRNA_S-ischiensis_contig74.18748.1|Name=mRNA_S-ischiensis_contig74.18748.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig74:144160..144841- (Schizocladia ischiensis KU_0333)
ATGACGCCGAGCCTGCCTAACGACGGCGATCACGAGACATACGACGCCGA
CTTCGAAGATCCCCCATCCCCGGCAGCTCCGGGCGGGGATGCGGATGCCG
CAGATGACGCCGAGCCTGCCTAACGACGGCGATCACGAGACATACGACGC
CGACTTCGAAGATCCCCCATCCCCGGCAGCTCCGGGCGGGGATGCGGATG
CCGCAGGGCGCAAGAAACTCCCTGGCGGCGGCCTCGTCGCGGCGGCCGCG
GCCGTCCAACGCGAGGAGGCCAGCAGCGCCCAAGCACTTGCAGCTCGGCG
CGACCCACCCACGACAAGGCGGGGGAGCGCAAGCGGCTCTGCGGGCAGCC
CTACAGTTGCAGGGCTTGCAGCTGGGGACCGCGTGGAGGCCCGCTTCGAC
GGCGGGTCGGCCTTCTACCCCGGCACGATCGTGGCGGTGGCGGCCTCGGG
CGGGGGGTTTGACATCCGCGGCGCAAGAAACTCCCTGGCGGCGGCCTCGT
CGCGGCGGCCGCGGCCGTCCAACGCGAGGAGGCCAGCAGCGCCCAAGCAC
TTGCAGCTCGGCGCGACCCACCCACGACAAGGCGGGGGAGCGCAAGCGGC
TCTGCGGGCAGCCCTACAGTTGCAGGGCTTGCAGCTGGGGACCGCGTGGA
GGCCCGCTTCGACGGCGGGTCGGCCTTCTACCCCGGCACGATCGTGGCGG
TGGCGGCCTCGGGCGGGGGGTTTGACATCCGC
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