mRNA_S-ischiensis_contig73.18709.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18709.1
Unique NamemRNA_S-ischiensis_contig73.18709.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig73.18709.1 vs. uniprot
Match: D8LBS9_ECTSI (Ankyrin repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS9_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-12
Identity = 46/102 (45.10%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    4 ATLLADLGDGTVLVSWTGTGEEEVIRASRVILSSPNPLAAWVRRPMGSFPFSRAALSLGGVPGLGTPPSSSXXXXXXXXXXXXXXXXXXXEGGEGVDDSPLA 309
            A LLADLGDGTVLVSW  TG EE+I A RV+LSS N L +  RR +      R  +SLGG PG G   S+                      G G+DD PLA
Sbjct:  693 AKLLADLGDGTVLVSWANTGVEEIIAARRVLLSSSNSLTSRARRSLARNSLFRTMMSLGGDPGSGDSDSNGD--------------------GGGIDDDPLA 774
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BLAST of mRNA_S-ischiensis_contig73.18709.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-9
Identity = 43/102 (42.16%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    4 ATLLADLGDGTVLVSWTGTGEEEVIRASRVILSSPNPLAAWVRRPMGSFPFSRAALSLGGVPGLGTPPSSSXXXXXXXXXXXXXXXXXXXEGGEGVDDSPLA 309
            A LLADLGDGTVLVSW  TG   +I A RV+LSS N L +  RR +      R  +SLGG PG G   S+                      G G+DD PL+
Sbjct:  499 AKLLADLGDGTVLVSWANTG---IIAARRVLLSSSNSLTSRARRSLARNSLFRTMMSLGGDPGSGDSDSNGD--------------------GAGIDDDPLS 577
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS9_ECTSI1.060e-1245.10Ankyrin repeat-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW24_9PHAE1.870e-942.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:774400..775728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LBS9
EggNOG free text desc.Zinc finger domain
EggNOG OGs2D0FD@1,2SE06@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size377
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817207.2845604-CDS-S-ischiensis_contig73:774399..7744711622817207.2845604-CDS-S-ischiensis_contig73:774399..774471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 774400..774471 +
1695740936.095143-CDS-S-ischiensis_contig73:774399..7744711695740936.095143-CDS-S-ischiensis_contig73:774399..774471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 774400..774471 +
1622817207.295934-CDS-S-ischiensis_contig73:775424..7757271622817207.295934-CDS-S-ischiensis_contig73:775424..775727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 775425..775727 +
1695740936.10879-CDS-S-ischiensis_contig73:775424..7757271695740936.10879-CDS-S-ischiensis_contig73:775424..775727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 775425..775727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18709.1prot_S-ischiensis_contig73.18709.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 774400..775727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18709.1

>prot_S-ischiensis_contig73.18709.1 ID=prot_S-ischiensis_contig73.18709.1|Name=mRNA_S-ischiensis_contig73.18709.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
SATLLADLGDGTVLVSWTGTGEEEVIRASRVILSSPNPLAAWVRRPMGSF
PFSRAALSLGGVPGLGTPPSSSSATAAAAATAAGSGLGSGSEGGEGVDDS
PLAAAAAAAASGGSEGDALSALGLA
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mRNA from alignment at S-ischiensis_contig73:774400..775728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18709.1 ID=mRNA_S-ischiensis_contig73.18709.1|Name=mRNA_S-ischiensis_contig73.18709.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-ischiensis_contig73:774400..775728+ (Schizocladia ischiensis KU_0333)
AGCGCAACGCTCTTGGCTGATCTTGGGGACGGGACAGTCCTGGTGTCATG
GACGGGGACGGGCGAGGAAGAGGTGAGGAAGCACGGGTACAGGGGGGGGG
GGTGGATTGGGCCTGGCCTCAGAGTAGCGAGCGCTTGTACGAGTATGTAC
AGAGAGAAGATGTGGTCGCGGCGACGGCGTGGGGATGAGGGCTGTACTGG
CAGAGGGGACACGACCCTCTCGTACTTTGTTTTCCCCCTCTCGGAGTAGT
TAGGTGCTTCGCAGTCCTGTAGTGTACAGTAGTTACAGAGTTCATACAGT
GTGCGTGCTGTACACCGGTGGTGTACTGTAGTGGCCTGACTTGGGTGAGG
GATTGGGGGTGCGGGGGGTTGCTTCCGACGTCGAGTGGGGGCCCCGTACT
TAATCAATGCTCAACACTCCCAAGTACTTGGTAGACCACATAGGAAGGTA
TGTATGCCTGCAATAAACCTGCCCCGTCTCGGCAGAGGAAAGTGTAACTG
TCAATGGTCTCGGGACTATGGCAAGCACAACGTGAGTACATATATACTTC
TGAAGTACTATGAGTCCCGGCTCCGGTCTTGTGGGGACGAGCCCCGCACG
TGCGTTTCTGTTGGCGTGAGGAGGACGTTGGTTCATAAACTGCGTCATCT
ATGGCCGGTGGAAAGAGTTGATCCTCTGGAGTGGACGGGTAAGAACCGAT
GCTATCCTAAGGCTCTTTGGCGGCGCCTGGCAGGTTTTTTCTTTGGGCCG
TAAGAACGGCGCACGGACTGACCTTGTCGGTGATGGGTGGGGGAGCCTGT
GTACGGTAGTGTGAGGGCCGATCCAGTGTCTGTTTTTGTGCTCCTCCCTT
ACTCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCTTCTTTTCCTGCCC
CTCGTGCCTGCTCCTCCTCCCCCTCCCCCTCCCCCTCCCCCTTCCCACTC
CGACTCCCCCCCGCCCATTCCCAATCCCCCTCTCCCCCCCCCACCCCCCC
CCCCCATCGTCCCCACAAACAACAGGTGATCCGGGCAAGCCGTGTGATCC
TCTCCTCGCCCAACCCCCTCGCCGCGTGGGTGCGGCGTCCCATGGGCTCC
TTCCCCTTCAGCCGCGCCGCCCTCTCCCTTGGCGGGGTGCCCGGCCTCGG
GACCCCCCCCTCCTCCTCCTCCGCCACCGCCGCCGCTGCCGCCACCGCGG
CTGGGTCCGGATTGGGGTCTGGTTCGGAGGGTGGAGAAGGTGTTGACGAC
AGCCCACTGGCGGCCGCGGCAGCCGCGGCCGCATCCGGCGGTTCGGAAGG
GGACGCTCTCTCGGCCCTGGGACTGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig73:774400..775728+

>mRNA_S-ischiensis_contig73.18709.1 ID=mRNA_S-ischiensis_contig73.18709.1|Name=mRNA_S-ischiensis_contig73.18709.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig73:774400..775728+ (Schizocladia ischiensis KU_0333)
AGCGCAACGCTCTTGGCTGATCTTGGGGACGGGACAGTCCTGGTGTCATG
GACGGGGACGGGCGAGGAAGAGAGCGCAACGCTCTTGGCTGATCTTGGGG
ACGGGACAGTCCTGGTGTCATGGACGGGGACGGGCGAGGAAGAGGTGATC
CGGGCAAGCCGTGTGATCCTCTCCTCGCCCAACCCCCTCGCCGCGTGGGT
GCGGCGTCCCATGGGCTCCTTCCCCTTCAGCCGCGCCGCCCTCTCCCTTG
GCGGGGTGCCCGGCCTCGGGACCCCCCCCTCCTCCTCCTCCGCCACCGCC
GCCGCTGCCGCCACCGCGGCTGGGTCCGGATTGGGGTCTGGTTCGGAGGG
TGGAGAAGGTGTTGACGACAGCCCACTGGCGGCCGCGGCAGCCGCGGCCG
CATCCGGCGGTTCGGAAGGGGACGCTCTCTCGGCCCTGGGACTGGCGGTG
ATCCGGGCAAGCCGTGTGATCCTCTCCTCGCCCAACCCCCTCGCCGCGTG
GGTGCGGCGTCCCATGGGCTCCTTCCCCTTCAGCCGCGCCGCCCTCTCCC
TTGGCGGGGTGCCCGGCCTCGGGACCCCCCCCTCCTCCTCCTCCGCCACC
GCCGCCGCTGCCGCCACCGCGGCTGGGTCCGGATTGGGGTCTGGTTCGGA
GGGTGGAGAAGGTGTTGACGACAGCCCACTGGCGGCCGCGGCAGCCGCGG
CCGCATCCGGCGGTTCGGAAGGGGACGCTCTCTCGGCCCTGGGACTGGCG
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