mRNA_S-ischiensis_contig73.18686.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig73.18686.1 vs. uniprot
Match: D8LMJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ5_ECTSI) HSP 1 Score: 228 bits (581), Expect = 1.430e-60 Identity = 146/394 (37.06%), Postives = 210/394 (53.30%), Query Frame = 2
Query: 2807 EGAPQGPTDAKGLLKGLG----AKAAGMAKKGAQLMQQMAGD----RIPPHKTEWWAKEACLKRCNCGDGVPADNPAYVPVPERPS------------TAPIE------ENREQWNTPTKFPPTSDAIRQFIEYSDARTAGQYSRVCVGWHEECHAEGEEGRPFHPTYTGMHSLVLQSALDAHDNKVDAIFFHQPTVVHQGRLFTAGDKKVRVWEFTGVQEPEDADPDTANQSQDAQDTSQTTGSSTEAEAMAAEGEYSQCEPTLQQLEAWKAVAVAMRDTAPLTLVKRVNGSMLCCSSNGNMSEWALANKLQNIVFRGQFWEHNRRINDVVFSLPSAGYCEAHGTPDHVCLMYSVSDDRLLKVWDLSSRRCLHTIRPRIADCGTLQSVARSDF 3910
+G P+ P KGLL GLG A+AA +AK +Q + G+ PP WA+ AC +RCNC GVP D+ A+VP+ E T P+E ENR + PP +R F+EY D+RT + + WH EC+ EEG P HP Y GMH + L S +DA +K+D +FFHQP G+LFTAG ++V W ++ + DT + A + S +T S +E +EG+ + P ++ +W++ V +RDTAP T++ VN N NM+ + AN + W+ F+ PS G+C+AHG P H C MYSVSDDR LKVWDL+++ CLHT++P+I+DCGT+ +V ++ F
Sbjct: 96 DGTPKKPK--KGLL-GLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPP-----WARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPLE---RTPPPPYVLRLFLEYMDSRTVARCAHTSKEWHRECYQRNEEGVPMHPAYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSPGQLFTAGQRRVTAWRR------QETEVDTEREQSTASEGSGSTKSGESSETSHSEGDAA---PRIEV--SWQSAGVCLRDTAPFTMILPVNSRP---RKNPNMA-FHSANTSSCFLA----WQ--------AFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKDCLHTVKPKISDCGTVWNVPKASF 451
BLAST of mRNA_S-ischiensis_contig73.18686.1 vs. uniprot
Match: A0A6U4D539_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D539_9STRA) HSP 1 Score: 221 bits (564), Expect = 2.810e-58 Identity = 147/474 (31.01%), Postives = 222/474 (46.84%), Query Frame = 2
Query: 2936 KTEWWAKEACLKRCNCGDGV---------PADNPAYVPVPERPSTAPI--EENREQWNTPTK-FPPTSDAIRQFIEYSDARTAGQYSRVCVGWHEECHAEGEEGRPFHPTYTGMHSLVLQSALDAHDNKVDAIFFHQPTVVHQGRLFTAGDKKVRVWEFTGVQEPEDADPDTANQSQDAQDTSQTTGSSTEAEAMAAEGEYSQCEPTLQQLEAWKAVAVAMRDTAPLTLVKRVNGSMLCCSSNGNMSEWALANKLQNIVFRGQFWEHNRRINDVVFSLPSAGYCEAHGTPDHVC-LMYSVSDDRLLKVWDLSSRRCLHTIRPRIADCGTLQSVARSDFHLFAGTSNGRVVVYGLGRVCRRAERHECDLHEQ-PLWFCLQETLQHGSEAITCMQCGGLGGAFKYLFTASADGSIKVWQTEPHHSFNHEVVTTFKQHER--KITCLCLSHAHIFSACDGGRLCVWSLGTLTLQRVV 4309
KT WA++ LKRCNC DGV P + P +V E P + E+ W P K P ++ + +Y A+ + + V W E + + M L H +V++ + GRL+TAGDK+V+VW LE ++ +A A+R+TA + ++ VNG++L C+SNG++ +W+L + +NI + +WEH IND + S P E + C +YSVSDDR +KVWD + + CL ++ P CGT++SVARS HL+ G+SNG + VY L R C R +RH C + E L FCLQ LQHG I ++CGG K+L++AS DG+ +VW + HE + H ++C C + AH+F+A + VW+L T+ LQ+V+
Sbjct: 96 KTPKWAEKNELKRCNCLDGVDNGDSRVYYPLNLPRFVTSLECPEGIRVRMEDPEFGWAEPQKVMNPAAEVLDFVFQYVGAKELAKVATVDRLWRERIDMQTH--------FIDMKQLANDYEHQVHSGRVESC------LEFNGRLYTAGDKRVKVW----------------------------------------------------NLETYECLAEAVRETAVINDIQVVNGALLVCASNGSIRQWSLTHNPKNIAYVAAYWEHRSWINDFIPSEP-----EPDDDGEMFCRFLYSVSDDRTVKVWDANKKVCLFSMDPPNRTCGTMRSVARSARHLYVGSSNGVIYVYPLKRECDREDRHGCSISEHGALPFCLQTELQHGKGIILQLECGGYRRQVKHLYSASTDGTFRVWSLPGKSGYEHECLRVIDAHAPGGALSCFCTTWAHLFTAGQDKVIRVWNLHTMELQKVL 498
BLAST of mRNA_S-ischiensis_contig73.18686.1 vs. uniprot
Match: A0A7S2RZP4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZP4_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.860e-35 Identity = 82/230 (35.65%), Postives = 123/230 (53.48%), Query Frame = 2
Query: 3563 RDTAPLTLVKRVNGSMLCCSSNGNMSEWALANKLQNIVFRGQFWEHNRRINDVVFSLPSAGYCEAHGTPDHVCLMYSVSDDRLLKVWDLSSRRCLHTIRPRIADCGTLQSVARSDFHLFAGTSNGRVVVYGLGRVCRRAERHECDLHEQPLWFCLQETLQHGSE----AITCMQCGGLGGAFKYLFTASADGSIKVWQTEPHHSFNHEVVTTFKQHERKITCLCLSHAHI 4240
+DTAP+T+ ++ + S+NG + +W++ K+ NI FRG W HN+ +ND+ AH ++++V DDR+ +VWDL+ RC+H I P + GTL+S SD F G+SNGR+ VY R CRR +RH C L P+ +C Q TL HG +T ++ GG YLFT +DG I+++ P + +V H +T L S AH+
Sbjct: 282 KDTAPITVAMEIDAFLFLASANGALRKWSMPFKVTNIDFRGSMWLHNKVVNDM-----------AHWKKGQESVLFTVCDDRICRVWDLTVNRCIHVIDPIDRESGTLRSACCSDQFFFIGSSNGRIDVYLTERKCRRQDRHICHLPSGPVPYCHQTTLSHGDPEVRPVVTALEVGGFHHREDYLFTGGSDGRIQIFSL-PDYGLEFPLVHILDLHTAPVTSLRCSWAHL 499
BLAST of mRNA_S-ischiensis_contig73.18686.1 vs. uniprot
Match: A0A7S2H458_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H458_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.850e-22 Identity = 76/274 (27.74%), Postives = 118/274 (43.07%), Query Frame = 2
Query: 3224 PTYTGMHSLVLQSALDAHDNKVDAIFFHQPTVVHQGRLFTAGDKKVRVWEFTGVQEPEDADPDTANQSQDAQDTSQTTGSSTEAEAMAAEGEYSQCEPTLQQLEAWKAVAVAMRDTAPLTLVKRVNGSMLCCSSNGNMSEWALANKLQNIVFRGQFWEHNRRINDVVFSLPSAGYCEAHGTPDHVCLMYSVSDDRLLKVWDLSSRRCLHTIRPRIADCGTLQSVARSDFHLFAGTSNGRVVVYGLGRV-CRRAERHECDLHEQPLWFCLQETLQ 4042
P Y M ++ AH+ +V + V ++GR +T GDK V+VW+ A A E+ + E + + D P+T + ++G++L SSNG + W + + ++ + R WEHN ++D +H +++ SDDR +K WDL RC HT+ P T++SVA SD LF G S G + VY C R +RHEC + +P +CLQ+TLQ
Sbjct: 27 PHYDDMKRFGVEMKFTAHEKRVKGV------VSYRGRCYTGGDKCVKVWKLQ--------------------------------RASAESEEFDRVE-----------LIHTVHDLCPVTFCQEIDGNLLVGSSNGAVRMWTMPHSIKKMNQRAVMWEHNALVHDA-----------SHWQRGKFSTLFTASDDRTIKAWDLHQVRCEHTLEPLDRRGATMRSVAVSDSFLFVGHSRGVIYVYLTDTSSCLREDRHECYISPRP--YCLQKTLQ 238 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig73.18686.1 >prot_S-ischiensis_contig73.18686.1 ID=prot_S-ischiensis_contig73.18686.1|Name=mRNA_S-ischiensis_contig73.18686.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=786bp MRAASLPWRIREHREASPVTEGSKLAPGRAETGRPRWVEEVTQRTRPQQEback to top mRNA from alignment at S-ischiensis_contig73:585600..605524+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig73.18686.1 ID=mRNA_S-ischiensis_contig73.18686.1|Name=mRNA_S-ischiensis_contig73.18686.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=19925bp|location=Sequence derived from alignment at S-ischiensis_contig73:585600..605524+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig73:585600..605524+ >mRNA_S-ischiensis_contig73.18686.1 ID=mRNA_S-ischiensis_contig73.18686.1|Name=mRNA_S-ischiensis_contig73.18686.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=4716bp|location=Sequence derived from alignment at S-ischiensis_contig73:585600..605524+ (Schizocladia ischiensis KU_0333)back to top |