mRNA_S-ischiensis_contig73.18654.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18654.1
Unique NamemRNA_S-ischiensis_contig73.18654.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig73.18654.1 vs. uniprot
Match: A0A485LFC7_9STRA (Aste57867_20086 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFC7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.760e-5
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   88 KKMQVNSKAAAAKEHQESLNAERQRKKAAQDEAKTAAAWAVGSDQRGSARQAEAERKQMEKLAQKAEKKKXXXXXXKELASMKNVPKKTKSKKADIPPWEAALA 399
            KK   NSK  AA   +    AE+ +KKAAQ+EA TAA W+ G+D R + R  + E K+ +  A+KAE K+        ++ +K   K T  K  D P WEAALA
Sbjct:    4 KKGNTNSKVEAANARKAVQEAEKGKKKAAQNEAATAAEWSQGADARSAKRAQDDELKRQQADAKKAELKRLQEEEEAAMSGIKAKAKTTAQKDLDKP-WEAALA 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A485LFC7_9STRA8.760e-541.35Aste57867_20086 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:341607..343942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog112098.XP_008605505.1
Preferred nameCCDC124
KEGG koko:K02357
GOsGO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0033554,GO:0034599,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2001141
EggNOG free text desc.cell division
EggNOG OGsKOG3223@1,KOG3223@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1014
Ec32 orthologEc-11_005260.1
Exons3
Model size545
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18654.1prot_S-ischiensis_contig73.18654.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 341607..343942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817198.9014883-CDS-S-ischiensis_contig73:341606..3418041622817198.9014883-CDS-S-ischiensis_contig73:341606..341804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 341607..341804 -
1695740929.9480035-CDS-S-ischiensis_contig73:341606..3418041695740929.9480035-CDS-S-ischiensis_contig73:341606..341804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 341607..341804 -
1622817198.912965-CDS-S-ischiensis_contig73:343426..3435831622817198.912965-CDS-S-ischiensis_contig73:343426..343583Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 343427..343583 -
1695740929.9677603-CDS-S-ischiensis_contig73:343426..3435831695740929.9677603-CDS-S-ischiensis_contig73:343426..343583Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 343427..343583 -
1622817198.9233315-CDS-S-ischiensis_contig73:343754..3439421622817198.9233315-CDS-S-ischiensis_contig73:343754..343942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 343755..343942 -
1695740929.978074-CDS-S-ischiensis_contig73:343754..3439421695740929.978074-CDS-S-ischiensis_contig73:343754..343942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 343755..343942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18654.1

>prot_S-ischiensis_contig73.18654.1 ID=prot_S-ischiensis_contig73.18654.1|Name=mRNA_S-ischiensis_contig73.18654.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
CRPAELPFVAPAPCPGDPRGGLPPCHTMGKKMQVNSKAAAAKEHQESLNA
ERQRKKAAQDEAKTAAAWAVGSDQRGSARQAEAERKQMEKLAQKAEKKKL
AESEEKELASMKNVPKKTKSKKADIPPWEAALADAKPKKKSARDRMREEA
QKKAEEEAAARRARAEAEAARLRAAGIEMVD
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mRNA from alignment at S-ischiensis_contig73:341607..343942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18654.1 ID=mRNA_S-ischiensis_contig73.18654.1|Name=mRNA_S-ischiensis_contig73.18654.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2336bp|location=Sequence derived from alignment at S-ischiensis_contig73:341607..343942- (Schizocladia ischiensis KU_0333)
TGTCGCCCGGCTGAGCTACCATTTGTTGCCCCAGCTCCGTGCCCAGGCGA
TCCCCGGGGCGGGCTGCCACCTTGCCACACCATGGGGAAGAAGATGCAGG
TTAACTCAAAGGCAGCTGCTGCCAAGGAGCACCAGGAGTCCTTGAACGCG
GAGCGACAGAGGAAGAAGGCGGCACAAGATGAGGCCAAGTAAGTGCCTTA
TGTTTTCATTGGTAGTTCTTGAATATTTTATTCGTTTTGCGTCTTTGAGT
GTAGGGTGCTTGCAGGAGGTTGTTGCGTCCCCCGATGGCCCTGACCGCTG
AGGTCTCTGCCCGGGAAAATTTGCCACGCTCCCCCCGGGATGGGGACCAC
GGATGACAGGACGGCTGCGGCGTGGGCAGTCGGGTCCGACCAGCGGGGTT
CAGCCAGACAGGCAGAGGCTGAGCGCAAGCAGATGGAGAAACTGGCTCAG
AAAGCAGAGAAGAAGAAGCTCGCCGAGAGCGAGGAGAAGGAGTTGGCCTC
AATGAAGAATGTGCCAGTGAGTGTACTTAACCATTTTGCCCCTGGGGTCC
GTATAATCATAGATTTTTAGTGTGTAAGTCCATTTATGCAGGGGTAAAAG
GGTTAACACCCGAGGTGGCGACGTTGCACTAATTCCTCGCCATACTCCTG
CACCTAGTGTAACGGCGTCCTCTAAGGGTCAACTCTTGTACACTGCGGGG
AGCCTTGCGCTGGTCGTCTCATCTGCAGTGACACTCGGAATTCCGTTCTG
TTGAACACAATTCCTCAATGTACAATCCAAACCGTTTTGCAAAGAGCGGG
GATGCGCTTGCCGGAGGGAACGCAAGTGCTGACCTGCGGCTGCTACATAT
TACGGCGAGCACGAACGCCCCCCGATCGTCTCTACAACGCGTCTGGGGGC
TTGGCACGGGTACGAAACAATTTGGCACGATACTGAGAGTGATAGTAGGG
CAAAAATTGCCGAAAATTGGCGACAATCAGAAGCAGAAAAGTATACTGAA
TGCGGTACCAGAAAATGGCAACAACGGAGAACGCAAGCCATTGTACACTC
ACTGAAGACTACTTCAAAATATTAATCAAGCCGCAGGCGAACGAGGGGTG
GGGCGGGTCTACAAATATGTGTGATTGTTGAACGCTGCTTTGGCCCAGTC
TTCCGAGAACGTTTCTTTGGGGTACTTTTCCTCAGAGTGAAGGTCTGGTG
GGTTGTCATGATCAAATCCTTGGAATCGATCCACAATCTACACAACCAGC
AATTGGCGCTGTAATCAACGGATGGCCCGACGAAGATGATCTACTGTACC
CCCCTCCTCTCCTTCCTCCCCCTCCTCCTCCTCCCCCCCCCCCCACACAG
CCCTTCCCTGGCGAGCCAAGGATCGGCCACTGTTGAGGTCTTTAGGGACG
TGGCCTGCACCTCGCCTGTGTTTTTCCTGTTAATACCGTGCTTGGGAGTG
TTTGGGTGTGGGGATCACATTTGCGACCAACAAACCGATGACCTTGGCGA
ATTGTTTTCGGCCGAATGGACCGGCCCAAAAGGGCCAATTCCGGCACCAA
TTTATGGTGGCCCGATCTGTTTTTTACAATGGCAATGCAGCAGTCGATAT
TGTACTTTGTGTGTACAGTACTCATACTTCACTCATGTTCCTGGTGTCAG
CAAGGTGTTTGGTGCTTGCAGAACAGGGGTCCCACGCTCACACAGTTCTC
CCCGTTTCCTCACTTCACTCACGAAAGCACGCGACATGGTGGCACTTCCT
AGGTACTCTGTCACTGCCTAACGCCGCATCGTCGCCTGCCACAAGCCACC
CCACAGCATCCATCTTCCACACGTCGCCGTTTCTGACATCTTTGAGCGTC
AGCGCTTTCCTGCCCGCCTGCCCCGCCCCCCGGCCGGCACCTGTGACCTC
CCAGCTCACCCCGGGGCTGCCCGCTCGCCCGACCGACCGCCTGTCCACGC
CCCCCCCTCCGGATCGGCGGGGGGCGGCGGCGGCGGCAGAAAAAGACTTG
TTCTTAGCTCCTTGATGTGATAGTCACTACTAATACAAGAACACTCAATT
CTTAAATGGGACTACTAATACGAGAACAGTCAATCTGACACGCTTGTGAT
TGTACCTCGTTACACTTAATATATATGAATCGCGGCAGAAAAAGACCAAG
AGCAAGAAGGCGGACATACCGCCTTGGGAGGCGGCGCTGGCGGACGCCAA
GCCCAAGAAGAAGAGCGCGCGGGACCGCATGCGGGAGGAGGCGCAGAAGA
AGGCCGAGGAGGAGGCGGCGGCGCGGCGGGCAAGGGCGGAGGCAGAGGCG
GCGCGGCTGCGGGCGGCGGGCATCGAGATGGTGGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig73:341607..343942-

>mRNA_S-ischiensis_contig73.18654.1 ID=mRNA_S-ischiensis_contig73.18654.1|Name=mRNA_S-ischiensis_contig73.18654.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig73:341607..343942- (Schizocladia ischiensis KU_0333)
TGTCGCCCGGCTGAGCTACCATTTGTTGCCCCAGCTCCGTGCCCAGGCGA
TCCCCGGGGCGGGCTGCCACCTTGCCACACCATGGGGAAGAAGATGCAGG
TTAACTCAAAGGCAGCTGCTGCCAAGGAGCACCAGGAGTCCTTGAACGCG
GAGCGACAGAGGAAGAAGGCGGCACAAGATGAGGCCAATGTCGCCCGGCT
GAGCTACCATTTGTTGCCCCAGCTCCGTGCCCAGGCGATCCCCGGGGCGG
GCTGCCACCTTGCCACACCATGGGGAAGAAGATGCAGGTTAACTCAAAGG
CAGCTGCTGCCAAGGAGCACCAGGAGTCCTTGAACGCGGAGCGACAGAGG
AAGAAGGCGGCACAAGATGAGGCCAAGACGGCTGCGGCGTGGGCAGTCGG
GTCCGACCAGCGGGGTTCAGCCAGACAGGCAGAGGCTGAGCGCAAGCAGA
TGGAGAAACTGGCTCAGAAAGCAGAGAAGAAGAAGCTCGCCGAGAGCGAG
GAGAAGGAGTTGGCCTCAATGAAGAATGTGCCAGACGGCTGCGGCGTGGG
CAGTCGGGTCCGACCAGCGGGGTTCAGCCAGACAGGCAGAGGCTGAGCGC
AAGCAGATGGAGAAACTGGCTCAGAAAGCAGAGAAGAAGAAGCTCGCCGA
GAGCGAGGAGAAGGAGTTGGCCTCAATGAAGAATGTGCCAAAAAAGACCA
AGAGCAAGAAGGCGGACATACCGCCTTGGGAGGCGGCGCTGGCGGACGCC
AAGCCCAAGAAGAAGAGCGCGCGGGACCGCATGCGGGAGGAGGCGCAGAA
GAAGGCCGAGGAGGAGGCGGCGGCGCGGCGGGCAAGGGCGGAGGCAGAGG
CGGCGCGGCTGCGGGCGGCGGGCATCGAGATGGTGGACAAAAAGACCAAG
AGCAAGAAGGCGGACATACCGCCTTGGGAGGCGGCGCTGGCGGACGCCAA
GCCCAAGAAGAAGAGCGCGCGGGACCGCATGCGGGAGGAGGCGCAGAAGA
AGGCCGAGGAGGAGGCGGCGGCGCGGCGGGCAAGGGCGGAGGCAGAGGCG
GCGCGGCTGCGGGCGGCGGGCATCGAGATGGTGGAC
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