mRNA_S-ischiensis_contig7.18243.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig7.18243.1
Unique NamemRNA_S-ischiensis_contig7.18243.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:2826062..2827020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817141.5327978-CDS-S-ischiensis_contig7:2826061..28262571622817141.5327978-CDS-S-ischiensis_contig7:2826061..2826257Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2826062..2826257 +
1695740884.8062344-CDS-S-ischiensis_contig7:2826061..28262571695740884.8062344-CDS-S-ischiensis_contig7:2826061..2826257Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2826062..2826257 +
1622817141.546466-CDS-S-ischiensis_contig7:2826898..28270201622817141.546466-CDS-S-ischiensis_contig7:2826898..2827020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2826899..2827020 +
1695740884.8159497-CDS-S-ischiensis_contig7:2826898..28270201695740884.8159497-CDS-S-ischiensis_contig7:2826898..2827020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2826899..2827020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18243.1prot_S-ischiensis_contig7.18243.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig7 2826062..2827020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig7.18243.1

>prot_S-ischiensis_contig7.18243.1 ID=prot_S-ischiensis_contig7.18243.1|Name=mRNA_S-ischiensis_contig7.18243.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
RAVTTGGGRGGVCGSHGRLSLRGDAFVPAEGLTSESHVRRRSSGNGGQMM
SDANALAATFPGAQAGGDDSDGDNNDGDSSVLFPHLVEDNASFSTAGASA
STGGGG
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mRNA from alignment at S-ischiensis_contig7:2826062..2827020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig7.18243.1 ID=mRNA_S-ischiensis_contig7.18243.1|Name=mRNA_S-ischiensis_contig7.18243.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=959bp|location=Sequence derived from alignment at S-ischiensis_contig7:2826062..2827020+ (Schizocladia ischiensis KU_0333)
CGGGCTGTGACTACGGGCGGGGGTCGTGGTGGGGTTTGTGGCAGTCATGG
GAGACTTTCATTGAGGGGAGATGCCTTCGTGCCTGCGGAAGGGCTCACCA
GCGAGTCGCACGTCCGCCGCCGGAGTTCTGGGAATGGGGGACAGATGATG
AGTGATGCGAATGCGCTCGCGGCAACCTTCCCAGGCGCTCAAGCTGGTGA
GACCAACTGTTCTGTGTTGTCCCCCTGCTATTGAGGGTTGCATGCCCGTT
ACTTCCCCAAACCATCACTGACACCCTTCGAGACGGTATGCATGGGACAC
CGTAGGAGTGTACTGTACTGTGTCAAAACAACCTCCCGCAGATTGCGCAG
CTCCTTGCTGCGTATATCCTCCCCCACGCAACCCTCCCCTGGCGACCTAA
GGAAGGGCCACTGTTGAGGTATTTAATGTCGTGGCCTCCACCTCACCCTG
TGTTGTTCCTGTTTTTTTACTACGTAGACGTGACATGGCGGCAATATGTC
GTCCCAGCTAGCAGCTCCTGCACACGCACGACACACTCACTCGAAGGTTG
AAACCTCCCTCCCCGTTTTCCCCCTCCTTACCCCCGGGTGCCCACCCCCA
CCAGTGATGGAATATCTAAGCAAATAACCTATTTATCGGCAGTACTGACC
TATGTATCTATCGATCGTCGGCATTTTGAATAGTTTGACCCACATCAATT
CCAAGTAGCTAGTAGTGCCACCCACAACACCAGCCGGGCCCGATAACCAT
CTACTGATCAATATTCCATCACTGACCCCCGCCCCCGTCCCCGCCCCCGC
CCCCGCCCTCGCCACCCCCTGTACACCCCGCCAAAAGGTGGCGACGACAG
CGACGGGGACAACAACGACGGCGACAGCAGCGTCCTCTTCCCTCACCTGG
TGGAAGACAATGCCAGCTTCTCGACAGCGGGTGCCTCTGCCTCCACCGGC
GGCGGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig7:2826062..2827020+

>mRNA_S-ischiensis_contig7.18243.1 ID=mRNA_S-ischiensis_contig7.18243.1|Name=mRNA_S-ischiensis_contig7.18243.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig7:2826062..2827020+ (Schizocladia ischiensis KU_0333)
CGGGCTGTGACTACGGGCGGGGGTCGTGGTGGGGTTTGTGGCAGTCATGG
GAGACTTTCATTGAGGGGAGATGCCTTCGTGCCTGCGGAAGGGCTCACCA
GCGAGTCGCACGTCCGCCGCCGGAGTTCTGGGAATGGGGGACAGATGATG
AGTGATGCGAATGCGCTCGCGGCAACCTTCCCAGGCGCTCAAGCTGCGGG
CTGTGACTACGGGCGGGGGTCGTGGTGGGGTTTGTGGCAGTCATGGGAGA
CTTTCATTGAGGGGAGATGCCTTCGTGCCTGCGGAAGGGCTCACCAGCGA
GTCGCACGTCCGCCGCCGGAGTTCTGGGAATGGGGGACAGATGATGAGTG
ATGCGAATGCGCTCGCGGCAACCTTCCCAGGCGCTCAAGCTGGTGGCGAC
GACAGCGACGGGGACAACAACGACGGCGACAGCAGCGTCCTCTTCCCTCA
CCTGGTGGAAGACAATGCCAGCTTCTCGACAGCGGGTGCCTCTGCCTCCA
CCGGCGGCGGCGGCGTGGCGACGACAGCGACGGGGACAACAACGACGGCG
ACAGCAGCGTCCTCTTCCCTCACCTGGTGGAAGACAATGCCAGCTTCTCG
ACAGCGGGTGCCTCTGCCTCCACCGGCGGCGGCGGC
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