mRNA_S-ischiensis_contig15.3857.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3857.1
Unique NamemRNA_S-ischiensis_contig15.3857.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3857.1 vs. uniprot
Match: A0A6H5KPL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.670e-14
Identity = 90/251 (35.86%), Postives = 126/251 (50.20%), Query Frame = 1 
Query:   46 KRSRQTAALAVMDVLGPQRG-LGLIAKEFVEGESKAVLRAAVAEALPLYQSSVGADDVARFGPAAARLQRPQLAEEALVTALSALACDPAQTVRVAALSAMEKGCQ--CLGGAHALAVLLGRCLDTSPKVRALAARLLVDEAGLRPGLL-PSYAPQPGPGWPMSDSEGPA-GLRRPGSESAMPLRFMSLSGAV--GTASGDSAGGGVLSQARRALVSSPTLLARLLGHYRGTLVKDDPERFPTILRRLVLA 777
            K  R+   LA  D+LG     + LI +E VEGE+KA LR+AVA+ L  Y+ +  + D                 +  L+  LS+LA D   +VR++AL+A+ +GC   C+ G   +++LL RCLD +PKVRALA RLLVDE  +  G +  S A       P +D  G A G +R   +S    R     G    G   G+   GGV             LL  L+ H++ TL + D +RFP +LR LV A
Sbjct:  355 KLRRRGLVLACTDILGHTSSCMSLIRQEMVEGEAKASLRSAVADGLLEYRRTCSSSDTHDV-------------QTVLLGVLSSLALDGVVSVRLSALAAIGEGCSSDCVPG---VSLLLERCLDAAPKVRALALRLLVDEFRVGVGAVGASLARAVLSPSPSADRSGSAVGTKRAAPDSRYGPRGNRSPGVWEGGLQGGE---GGV------------ALLGELMRHHQ-TLQETDSDRFPLLLRNLVEA 573
[Close]
BLAST of mRNA_S-ischiensis_contig15.3857.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.870e-11
Identity = 92/262 (35.11%), Postives = 125/262 (47.71%), Query Frame = 1 
Query:   46 KRSRQTAALAVMDVLGPQRG-LGLIAKEFVEGESKAVLRAAVAEALPLYQSSVGADDVARFGPAAARLQRPQLAEEALVTALSALACDPAQTVRVAALSAMEK-------------GCQ--CLGGAHALAVLLGRCLDTSPKVRALAARLLVDEAGLRPGLL-PSYAPQPGPGWPMSDSEGPA-GLRRPGSESAMPLRFMSLSGAVGTASGDSAGGGVLSQARRALVSSPTLLARLLGHYRGTLVKDDPERFPTILRRLVLA 777
            K  R+   LA +D+LG     L LI +E VEGE+KA LR+AVA+ L  Y+ +  + D                 +  L+  LSALA D    VR++AL+A+ +             GC   C+    A+++LL RCLD +PKVRALA RLLVDE  +  G +  S A       P +D  G   G  R   +S    R        G  S D   GG L +    +     LL  L+ H++ TL + D ERFP +LR LV A
Sbjct:  284 KLRRRGLVLACIDILGHTSSCLSLIRQEMVEGEAKASLRSAVADGLLEYRRTCSSSDTHGV-------------QTVLLGVLSALALDGVVAVRLSALAAIGEALGPIKRFASVFQGCSSDCV---PAVSLLLERCLDAAPKVRALALRLLVDEFRVGIGAVGASLARAVLSPSPAADGSGSTVGTSRGAPDSREWPR--------GNRSPDVWEGG-LQEGENGVA----LLGELMRHHQ-TLEETDSERFPLLLRGLVEA 515
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPL7_9PHAE1.670e-1435.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLH9_ECTSI6.870e-1135.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2672098..2676039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-17_001120.1
Exons5
Model size849
Cds size849
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3857.1prot_S-ischiensis_contig15.3857.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2672098..2676039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.5613878-CDS-S-ischiensis_contig15:2672097..26722321622815772.5613878-CDS-S-ischiensis_contig15:2672097..2672232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2672098..2672232 +
1695739907.5687954-CDS-S-ischiensis_contig15:2672097..26722321695739907.5687954-CDS-S-ischiensis_contig15:2672097..2672232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2672098..2672232 +
1622815772.5727077-CDS-S-ischiensis_contig15:2672631..26727631622815772.5727077-CDS-S-ischiensis_contig15:2672631..2672763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2672632..2672763 +
1695739907.5842705-CDS-S-ischiensis_contig15:2672631..26727631695739907.5842705-CDS-S-ischiensis_contig15:2672631..2672763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2672632..2672763 +
1622815772.5825562-CDS-S-ischiensis_contig15:2673364..26735201622815772.5825562-CDS-S-ischiensis_contig15:2673364..2673520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2673365..2673520 +
1695739907.5943494-CDS-S-ischiensis_contig15:2673364..26735201695739907.5943494-CDS-S-ischiensis_contig15:2673364..2673520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2673365..2673520 +
1622815772.592257-CDS-S-ischiensis_contig15:2674936..26752561622815772.592257-CDS-S-ischiensis_contig15:2674936..2675256Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2674937..2675256 +
1695739907.6058207-CDS-S-ischiensis_contig15:2674936..26752561695739907.6058207-CDS-S-ischiensis_contig15:2674936..2675256Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2674937..2675256 +
1622815772.6016119-CDS-S-ischiensis_contig15:2675933..26760391622815772.6016119-CDS-S-ischiensis_contig15:2675933..2676039Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2675934..2676039 +
1695739907.6156235-CDS-S-ischiensis_contig15:2675933..26760391695739907.6156235-CDS-S-ischiensis_contig15:2675933..2676039Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2675934..2676039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3857.1

>prot_S-ischiensis_contig15.3857.1 ID=prot_S-ischiensis_contig15.3857.1|Name=mRNA_S-ischiensis_contig15.3857.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=283bp
HHRHLQPPPKALAPSKRSRQTAALAVMDVLGPQRGLGLIAKEFVEGESKA
VLRAAVAEALPLYQSSVGADDVARFGPAAARLQRPQLAEEALVTALSALA
CDPAQTVRVAALSAMEKGCQCLGGAHALAVLLGRCLDTSPKVRALAARLL
VDEAGLRPGLLPSYAPQPGPGWPMSDSEGPAGLRRPGSESAMPLRFMSLS
GAVGTASGDSAGGGVLSQARRALVSSPTLLARLLGHYRGTLVKDDPERFP
TILRRLVLAATTATTPEQGPSSEGGSRGPGARA
back to top

mRNA from alignment at S-ischiensis_contig15:2672098..2676039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3857.1 ID=mRNA_S-ischiensis_contig15.3857.1|Name=mRNA_S-ischiensis_contig15.3857.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3942bp|location=Sequence derived from alignment at S-ischiensis_contig15:2672098..2676039+ (Schizocladia ischiensis KU_0333)
CACCACCGCCACTTGCAGCCGCCTCCCAAGGCTCTGGCACCCAGCAAGCG
GTCCCGCCAGACTGCCGCCCTGGCTGTCATGGACGTCCTGGGACCGCAGC
GGGGCCTGGGCCTCATCGCCAAGGAGTTTGTGGAGGTGGGTTGGGCCAGA
CAGGGGGTAGGGGGGGGGGGGGGCAGGGGCTGCGGGAGCCTGGAGAAGGA
GGGTGAGGGGCAAATTGCTGCAGTGTTTGCGGTACTTAGGCAAGTACTGT
ACTAGTAGTACTTGGTGCTCATGTGGCTGTCGGCCAGCAACGCATTGCAA
GACCATGAGAATAGGTGGTGTCACCATCCCCTGCTGGGCCATGCACACAA
TGCTCTTGCTGCTTTGCTGCTGCCCCCGCCACCACCGCCGCCGCCGCCGC
TCACTGCCGCCACTGTCGCCGCCGCCTCCACCGCCATCACTGCTCTGCCG
AAGCTGCCCCCCCCCCGCCGCCACTGGCCCCCGGACCTTTCTTCGTCTCA
CGCGTTTCCCCTTCCCTCCTGGTGGGGCACACAGGGGGAGTCCAAGGCGG
TGCTGCGGGCTGCCGTGGCGGAGGCGCTGCCGCTGTACCAATCCAGCGTG
GGCGCGGATGATGTCGCTCGCTTCGGCCCTGCCGCCGCCAGGCTGCAACG
CCCGCAGCTCGCAGAGGTGCGTCACGGCTGCGCCCAGCCCTGTGCATGCT
TGCACGCCGCCACGGGTGTGATTGATTGACATTCCGCCGCCGGCCATGGG
GGGACGCTGTGTGTGTGTCTGTGTGTAACCCTAACCCTAACCCTAACCCC
ACGACCACCTCCTAACCCCTGTACCACGATGTACTTCAAGTATACTGCAA
TACAACTACAGCAACACTGTGCTTTCTGTACAGTTTACTATGGCACCGCT
GTGGCGTGCAGCACAACCACTGCCGTACTTTCACGGCGCATCCAACTGTA
CTCTACAGTGCTTCCGGAAGGGCATACTGTACAGCATTTCGAGTACATAC
CTACTTGCCCCCAACCACTCCCTGTACAGATGCCTGAGCACTGTGCAGCC
AGGTATACCGTACAGTGCCTACATAGGTTCTTCGCCCCAACCATCCCCGA
ATACGAAGTAGATTCTAAAGCCAACTACAGCCAAGCACAGTACGAGGTGC
TTTCTACATCCTTCAAGTACTTCAAAGTACAGTTTAGGGTACCTACCATC
GTCCTCTGGCGTTCTTGGAGCTCTAGAGGCTAAAGATATCCTGGCCTGAT
TGCTGGCCACCCTGCAGGAGGCTCTGGTGACGGCCCTGTCCGCGCTGGCC
TGCGACCCGGCCCAGACTGTCCGTGTGGCCGCGCTCTCGGCGATGGAGAA
AGGCTGCCAGTGCCTGGGGGGTGCCCATGCCTTGGCCGTGCTGCTGGGCC
GCTGCCTTGACACCTCGCCCAAGGTGCAGTAGCCGCCCCCCTGTACTGTA
GATACTATGCTTTGAAGTACATGGTGTGATTCGAAGTGCATTTGTGTGCA
GTGTTAGAGCACGAGTCGCCCTTCGCGTGTTTTGCCTGCTCCGTCTCGAC
AGAGGCGCGTGGTCAATGGTCTCGGGACTACGTCAAGCACCACGTGAGTA
CATATATATACTTGGAAGTACACATTGAAGTACTTCCGGAAGTATGTACT
TGGTACTGTACAACTGCTTCTCGGAAGTACTAGAGTACAGTAATACATAG
TGTGTGCTCGCTTCATGCTTGCCGCAGTCGAGTCGAAGAGCACGTATCGC
ATGTACCGTACTTGGGAAGCACGAATCTCCTCCCTGGCGAGCCAAGGAAG
GCGTTTGCCACTGTCGGGGCCTTTGGTGACGTGGTTTGATGTGATGTGGT
GTCAAACTACTGCACATTAGAGTACGCATTGCATCGCATCACATCATACC
ACGTCATGTCATTGGCACTGTTGGGGTCATTAGTGACGTGGCCTGCACCT
CGCCCTGTGTCTTTCCTGTTAGTACTAGAGCCTCTACAGCATGAGCCTCT
ACAGCATGCGCCCGCTTCACGCCGAAGCATAGGTAGCATCACACGGAAGC
TACAATACAGTTTTGACTGGAATGAATGTTAATAATGCGATTGCTTCGAA
GCAGTACAGTCTCCACCTGCGTGAGATTAGTCCAGCGCGCTCGTTGATTC
TGAGTGGCTCGGCATATAGTACGTGTGATTTCTTTGCTCTTGCCGTATAC
TTCCAAGTATGAACTAGCTGGTAGCGCCTGGTAAGCTGCCAGCGAGGGCT
GAACTAAAGCCTAGGAGGACAACGGGTGCAGCACATCTCTCACAGTTTCT
GGAATTAATTCCGGCCCATCTACTTACATTGCATGAATCGATCGATAGAC
CCTTGCTCGTATGTAGACTACTTCTCGGAAGTAGAACAGTGGCGGCTCCA
AGTACTGCTTCAGAGTACTAGTACAGTAGTACATACCTCCAAGCAGAAGA
GCGGGCGGGCGAGCGAGTTGCGGACCACATCACTAGGGATCTCAACTGCG
ACCTTAGGACAGATACTGTAGGATGTGGTTGTACTTGTAGTAGATATAGT
AGTCCGAAGTACTTCCGGAAGTACCACTGTGATAGCACCTTACGCGGCTT
TGCAGTATCTTGCAGCAGCCATGCTACTGTACAGTACCAGCAGCTGCGAA
AAACCTTTGTTTGCCGGGCACCGATGACAAGGCAGGTGCCCAATGAAAAC
CCTCCCTCGTCGTGCCCCTCCTCCTACTACTACTCCTACTCCCACTCTTC
TTCCTCCTCCTCCCCTCCCCCCCCCTCCCTTTCCTCCTCCCAACCTCCCC
CCCCTCCCCCCCTGCCCCCCCCCCCACCTGCCCCTGGAGGTCCGCGCCCT
TGCTGCCCGCCTGCTTGTCGACGAGGCAGGCCTGCGACCAGGCTTGCTCC
CGTCCTATGCCCCCCAACCCGGCCCGGGCTGGCCTATGTCGGACTCAGAG
GGCCCAGCGGGCCTGAGGAGGCCTGGCTCTGAGTCGGCCATGCCACTGCG
ATTCATGAGCCTGAGTGGCGCAGTGGGCACTGCCTCAGGGGACAGTGCCG
GCGGCGGGGTCCTGTCGCAGGCACGCCGGGCACTGGTGTCGTCGCCCACC
CTCCTGGCGCGCCTTCTGGGCCACTACAGGGGCACCCTGGTCAAGGACGA
CCCGGAGAGGTGACTCTGAGGAAGCCTGAGCCTGAGCCTTTCCCCGGGCC
TCCGGCTGTCCGACGACTCCCGAGGCCTTGTGTTGGGCGCGGCTTCCGAG
TTCTCCTTCTTCTTTCTTTTTTTCCCTCGGTGTTGCGTTCGGAGTCCGAG
TCTGCATGCTCGATCGGCCGGCACAGTCATATCTTTGAAGTACTTCGAAG
TATTAAATTACCATCAGGCAAGGCGTAAACATCACGAGCGCCAGTGTGCA
ATGCGAAGACTACAGTAGAGCTACTGCTGAACATGAGGGAAAGTTGAAAC
CGAGACAAAATCTCTCAGGCACGGCGCCCCGAGCGGCCGCCAGGCCGGGA
GCTACGCCACGCCGCAGCGCGATTGTCGTCGCACGGGCGCGTAGCTTCCG
CGCCCAAGAGTGAGGGCTTCGGCCTGCCCCCGGATGCCGAGTCAGCGCGT
TTGAGAAACTTGAAGCCATTTCCCCGTGCCGCTTTGAACAGCTCGCCGGC
ACTTGCCCCACAACGCTTGAGATATATTCGCCCGTGCTGCTGAACGCCGC
GCCCGCATAGTCCCACCGCGCAACAGGCATGACACCAAGTTTGTACTCTC
CCAAACTGAATGTGCCGTACTGTCCGCTCGTGACACACGCACGCCTCCCC
CCGCCCCCCCCTGCCCCCCCCGCTCGGCACGTACAGGTTCCCCACAATCC
TCCGCCGTCTTGTCCTGGCCGCGACCACCGCCACCACGCCAGAACAGGGC
CCAAGCTCAGAGGGCGGCAGCCGCGGGCCCGGCGCTCGGGCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:2672098..2676039+

>mRNA_S-ischiensis_contig15.3857.1 ID=mRNA_S-ischiensis_contig15.3857.1|Name=mRNA_S-ischiensis_contig15.3857.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1698bp|location=Sequence derived from alignment at S-ischiensis_contig15:2672098..2676039+ (Schizocladia ischiensis KU_0333)
CACCACCGCCACTTGCAGCCGCCTCCCAAGGCTCTGGCACCCAGCAAGCG
GTCCCGCCAGACTGCCGCCCTGGCTGTCATGGACGTCCTGGGACCGCAGC
GGGGCCTGGGCCTCATCGCCAAGGAGTTTGTGGAGCACCACCGCCACTTG
CAGCCGCCTCCCAAGGCTCTGGCACCCAGCAAGCGGTCCCGCCAGACTGC
CGCCCTGGCTGTCATGGACGTCCTGGGACCGCAGCGGGGCCTGGGCCTCA
TCGCCAAGGAGTTTGTGGAGGGGGAGTCCAAGGCGGTGCTGCGGGCTGCC
GTGGCGGAGGCGCTGCCGCTGTACCAATCCAGCGTGGGCGCGGATGATGT
CGCTCGCTTCGGCCCTGCCGCCGCCAGGCTGCAACGCCCGCAGCTCGCAG
AGGGGGAGTCCAAGGCGGTGCTGCGGGCTGCCGTGGCGGAGGCGCTGCCG
CTGTACCAATCCAGCGTGGGCGCGGATGATGTCGCTCGCTTCGGCCCTGC
CGCCGCCAGGCTGCAACGCCCGCAGCTCGCAGAGGAGGCTCTGGTGACGG
CCCTGTCCGCGCTGGCCTGCGACCCGGCCCAGACTGTCCGTGTGGCCGCG
CTCTCGGCGATGGAGAAAGGCTGCCAGTGCCTGGGGGGTGCCCATGCCTT
GGCCGTGCTGCTGGGCCGCTGCCTTGACACCTCGCCCAAGGAGGCTCTGG
TGACGGCCCTGTCCGCGCTGGCCTGCGACCCGGCCCAGACTGTCCGTGTG
GCCGCGCTCTCGGCGATGGAGAAAGGCTGCCAGTGCCTGGGGGGTGCCCA
TGCCTTGGCCGTGCTGCTGGGCCGCTGCCTTGACACCTCGCCCAAGGTCC
GCGCCCTTGCTGCCCGCCTGCTTGTCGACGAGGCAGGCCTGCGACCAGGC
TTGCTCCCGTCCTATGCCCCCCAACCCGGCCCGGGCTGGCCTATGTCGGA
CTCAGAGGGCCCAGCGGGCCTGAGGAGGCCTGGCTCTGAGTCGGCCATGC
CACTGCGATTCATGAGCCTGAGTGGCGCAGTGGGCACTGCCTCAGGGGAC
AGTGCCGGCGGCGGGGTCCTGTCGCAGGCACGCCGGGCACTGGTGTCGTC
GCCCACCCTCCTGGCGCGCCTTCTGGGCCACTACAGGGGCACCCTGGTCA
AGGACGACCCGGAGAGGTCCGCGCCCTTGCTGCCCGCCTGCTTGTCGACG
AGGCAGGCCTGCGACCAGGCTTGCTCCCGTCCTATGCCCCCCAACCCGGC
CCGGGCTGGCCTATGTCGGACTCAGAGGGCCCAGCGGGCCTGAGGAGGCC
TGGCTCTGAGTCGGCCATGCCACTGCGATTCATGAGCCTGAGTGGCGCAG
TGGGCACTGCCTCAGGGGACAGTGCCGGCGGCGGGGTCCTGTCGCAGGCA
CGCCGGGCACTGGTGTCGTCGCCCACCCTCCTGGCGCGCCTTCTGGGCCA
CTACAGGGGCACCCTGGTCAAGGACGACCCGGAGAGGTTCCCCACAATCC
TCCGCCGTCTTGTCCTGGCCGCGACCACCGCCACCACGCCAGAACAGGGC
CCAAGCTCAGAGGGCGGCAGCCGCGGGCCCGGCGCTCGGGCTGTTCCCCA
CAATCCTCCGCCGTCTTGTCCTGGCCGCGACCACCGCCACCACGCCAGAA
CAGGGCCCAAGCTCAGAGGGCGGCAGCCGCGGGCCCGGCGCTCGGGCT
back to top