mRNA_S-ischiensis_contig15.3856.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3856.1
Unique NamemRNA_S-ischiensis_contig15.3856.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3856.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.160e-5
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 2 
Query:   29 QASVKIVGNLMRADVDACEAFFRVALPHLLA---GLPLAGPPGGAPRRVPYLLAAVLRTLVESTRCK 220
            +A V I+GN +RAD D   AFFR  +P +L    G    G  GG+ RRVP  LAA+LR+LV +TRC+
Sbjct:  132 RACVTIIGNYVRADPDTSGAFFRDVIPKVLLMGMGGGRRGQSGGS-RRVPRRLAALLRSLVRTTRCR 197
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLH9_ECTSI1.160e-549.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2671517..2671989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.1699898-CDS-S-ischiensis_contig15:2671516..26717741622815739.1699898-CDS-S-ischiensis_contig15:2671516..2671774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2671517..2671774 +
1695739886.0497813-CDS-S-ischiensis_contig15:2671516..26717741695739886.0497813-CDS-S-ischiensis_contig15:2671516..2671774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2671517..2671774 +
1622815739.1810875-CDS-S-ischiensis_contig15:2671939..26719871622815739.1810875-CDS-S-ischiensis_contig15:2671939..2671987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2671940..2671987 +
1695739886.064055-CDS-S-ischiensis_contig15:2671939..26719871695739886.064055-CDS-S-ischiensis_contig15:2671939..2671987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2671940..2671987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3856.1prot_S-ischiensis_contig15.3856.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2671517..2671987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3856.1

>prot_S-ischiensis_contig15.3856.1 ID=prot_S-ischiensis_contig15.3856.1|Name=mRNA_S-ischiensis_contig15.3856.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
GEQGRCRASAGLREDSGEPDAGRRGRLRSLLPGRAAAPTGGPPPGRAAGR
GPQAGALLAGRGPEDARGEHQMQNPRGWACIRGACAANEKVQRRRAGGGR
SA
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mRNA from alignment at S-ischiensis_contig15:2671517..2671989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3856.1 ID=mRNA_S-ischiensis_contig15.3856.1|Name=mRNA_S-ischiensis_contig15.3856.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=473bp|location=Sequence derived from alignment at S-ischiensis_contig15:2671517..2671989+ (Schizocladia ischiensis KU_0333)
GGGGAGCAGGGGAGATGCCGGGCCAGTGCAGGCCTCCGTGAAGATAGTGG
GGAACCTGATGCGGGCAGACGTGGACGCCTGCGAAGCCTTCTTCCGGGTC
GCGCTGCCGCACCTACTGGCGGGCCTCCCCCTGGCAGGGCCGCCGGGCGG
GGCCCCCAGGCGGGTGCCTTACTTGCTGGCCGCGGTCCTGAGGACGCTCG
TGGAGAGCACCAGATGCAAAACCCTCGAGGCTGGGCATGCATACGTGGCG
CGTGTGCGGTGCGGGAATTGTGTGTTTTGTGTGTGTATTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGT
GCTTGTATGTGCATGGGCCGCCAACCCACCCCTCCAGGGCCGGTTCCCTC
CCCCCCCCCCCCCTCCCCCTCAGGCAAATGAGAAGGTTCAACGTAGGCGA
GCTGGTGGCGGCCGCAGTGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:2671517..2671989+

>mRNA_S-ischiensis_contig15.3856.1 ID=mRNA_S-ischiensis_contig15.3856.1|Name=mRNA_S-ischiensis_contig15.3856.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig15:2671517..2671989+ (Schizocladia ischiensis KU_0333)
GGGGAGCAGGGGAGATGCCGGGCCAGTGCAGGCCTCCGTGAAGATAGTGG
GGAACCTGATGCGGGCAGACGTGGACGCCTGCGAAGCCTTCTTCCGGGTC
GCGCTGCCGCACCTACTGGCGGGCCTCCCCCTGGCAGGGCCGCCGGGCGG
GGCCCCCAGGCGGGTGCCTTACTTGCTGGCCGCGGTCCTGAGGACGCTCG
TGGAGAGCACCAGATGCAAAACCCTCGAGGCTGGGCATGCATACGTGGCG
CGTGTGCGGGGGAGCAGGGGAGATGCCGGGCCAGTGCAGGCCTCCGTGAA
GATAGTGGGGAACCTGATGCGGGCAGACGTGGACGCCTGCGAAGCCTTCT
TCCGGGTCGCGCTGCCGCACCTACTGGCGGGCCTCCCCCTGGCAGGGCCG
CCGGGCGGGGCCCCCAGGCGGGTGCCTTACTTGCTGGCCGCGGTCCTGAG
GACGCTCGTGGAGAGCACCAGATGCAAAACCCTCGAGGCTGGGCATGCAT
ACGTGGCGCGTGTGCGGCAAATGAGAAGGTTCAACGTAGGCGAGCTGGTG
GCGGCCGCAGTGCGGCAAATGAGAAGGTTCAACGTAGGCGAGCTGGTGGC
GGCCGCAGTGCG
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