mRNA_S-ischiensis_contig15.3831.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3831.1
Unique NamemRNA_S-ischiensis_contig15.3831.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3831.1 vs. uniprot
Match: D7G4N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 7.720e-9
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:   62 QLLREYEAAQQGAEPGSRCTVARAPHQIPFKMMDSNDPLRKKERDRLRSIQRLKKKK 232
            ++L+ Y+AA +  +  +RC VAR   QIP+KMMDSNDP RKK RDR RSI R++KKK
Sbjct:  483 KILQSYDAASRKLDINARCCVARTTQQIPYKMMDSNDPRRKKARDRQRSIDRIRKKK 539
[Close]
BLAST of mRNA_S-ischiensis_contig15.3831.1 vs. uniprot
Match: A0A835YHP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHP0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.460e-5
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   68 LREYEAAQQGAEPGSRCTVARAPHQIPFKMMDSNDPLRKKERDRLRSIQRLKKKKRGG 241
            L  ++AAQ       RC +ARA   +P++ MDS+DPLRK+ERDR RS QRL+K  RGG
Sbjct:  291 LAAWQAAQARLPESERCCLARAASALPYRCMDSSDPLRKRERDRRRSKQRLQKL-RGG 347
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4N4_ECTSI7.720e-957.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHP0_9STRA2.460e-553.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2529130..2530842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog2880.D7G4N4
EggNOG OGs2BXY2@1,2S2G6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1008
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3831.1prot_S-ischiensis_contig15.3831.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2529161..2530081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.352922-UTR-S-ischiensis_contig15:2529129..25291601622815771.352922-UTR-S-ischiensis_contig15:2529129..2529160Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2529130..2529160 +
1695739906.7720547-UTR-S-ischiensis_contig15:2529129..25291601695739906.7720547-UTR-S-ischiensis_contig15:2529129..2529160Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2529130..2529160 +
1622815771.3858414-UTR-S-ischiensis_contig15:2530081..25308421622815771.3858414-UTR-S-ischiensis_contig15:2530081..2530842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2530082..2530842 +
1695739906.8031013-UTR-S-ischiensis_contig15:2530081..25308421695739906.8031013-UTR-S-ischiensis_contig15:2530081..2530842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2530082..2530842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.3657932-CDS-S-ischiensis_contig15:2529160..25292711622815771.3657932-CDS-S-ischiensis_contig15:2529160..2529271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2529161..2529271 +
1695739906.7842848-CDS-S-ischiensis_contig15:2529160..25292711695739906.7842848-CDS-S-ischiensis_contig15:2529160..2529271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2529161..2529271 +
1622815771.3758342-CDS-S-ischiensis_contig15:2529976..25300811622815771.3758342-CDS-S-ischiensis_contig15:2529976..2530081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2529977..2530081 +
1695739906.794402-CDS-S-ischiensis_contig15:2529976..25300811695739906.794402-CDS-S-ischiensis_contig15:2529976..2530081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2529977..2530081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3831.1

>prot_S-ischiensis_contig15.3831.1 ID=prot_S-ischiensis_contig15.3831.1|Name=mRNA_S-ischiensis_contig15.3831.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
MYYCVPLLVLQLLREYEAAQQGAEPGSRCTVARAPHQIPFKMMDSNDPLR
KKERDRLRSIQRLKKKKRGGQ*
back to top

mRNA from alignment at S-ischiensis_contig15:2529130..2530842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3831.1 ID=mRNA_S-ischiensis_contig15.3831.1|Name=mRNA_S-ischiensis_contig15.3831.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1713bp|location=Sequence derived from alignment at S-ischiensis_contig15:2529130..2530842+ (Schizocladia ischiensis KU_0333)
GGACCCCTGCCACTGTGACGGGTCGTGAACGATGTACTACTGTGTGCCTT
TGCTGGTGCTGCAGCTGCTGAGGGAGTATGAGGCGGCCCAGCAGGGGGCG
GAGCCGGGCTCGAGGTGCACGGTGGCCAGGGCTCCCCACCAGGTCAGTGC
TTCGAAAGCACTTGAAGTGCTACTCTAAGTACTGTAGTACTACTTCCAGT
ACAGCAGTAGAGTGCAAGTACAGTAGGTAGTACAGTTGGTCAGTAGCACA
GCAGTACAGTAGTATATAGTACTAGCAGAAACACTGCGCTTCCAAGTACA
TGCAGCGTGCAAGTAGTGCAGAGCGCTTCCAAAGACGCGTGCGGTTCCTG
CGGACAAGCACGGTTCAGTTTGCGCCTGAGGCTAGAGGACTAGGTATGTC
TTCGGTGTCTTGCCTTTGAAGGACTGGAGAAGTATGTGAGCAAGTAGTAC
AGTAGGAGAAACGCAAGCAAGGTGCGGACACTCCCGTGTTTGTACTGTAG
TGACCTCGAAAGTGGGCCTCCCTCTACGCGCAACACAGAGAGGCGGGGGT
AAGGGGAAGGAGGTGGGGAGGAGAGGGAGGAGGAGGGGCTCCTCGGGGGA
GGAGGGGGAGGAGGAGGAGGAGGGGAGTATCGAAGCATCTTGTGACTGCT
CCTGACACGTTGTTGCCTGAAGGTCATTATTCGTGTCCATGATCTCCACG
GGGGGGGGGGGGGGGGGGGGGCTGACTGGCGGCACCGTGAAGTGTCACTG
ACCCCCCGCCCACCCGTGCGCGCGTGTGCTCTGACGCTCGCTTGCTCTCG
ATCCATCCATCCATCCATGGGCCGGCCCGCCGGCCGCTCGGTCTCAGATC
CCTTTCAAGATGATGGACAGCAACGACCCGCTGCGCAAGAAGGAGAGGGA
TCGCCTGAGGAGCATACAGAGGCTCAAGAAGAAGAAGCGGGGGGGGCAGT
AGACTCGGAGATACAGTACTGCGATACTTCAGGAAGTACTTATGCGCCTG
CCGCCGTGTTCTCCGTGGTGGGGCCGGGTGGCTGCTGGCTGCCACCGCCA
ACTTGCTGCTGCTTAGCGGCCAGCGCCGTCAGCCACGGCGGGGTGGCCAG
GCCACGGCCCCTCCCTGTCTCTCTATCTCTCTCTCTCTCTCTCTCTGCAC
CTACTCGTTTCTCTCTCTTCCCGTGACTTGCGCAATAGCCTGACTTTCAA
GTTCTGGACGCCATCGTCCGAGTCAACCGGATGGTCACAGACGGCTCAGA
GCCTGAGGTGCCTCCCGATGCGATGTGATGTGATGAGATGTGATATGATG
TGCGCTCTAAAGTACTGTATTGTAAGGAAAAACACGGGGGCGAGGTGCGG
GCCACGTCACTAGAGGCCGCAGCAGTGGCCCTTCCTTAGCTCGCCAGGGG
AAATTTACTGTAGTTTGACACCACATCACATCACATCACATCACCCCATG
GCGAAGCTTCAGCGGCCCGTCAACGCCCTTCGGTCGGCCAGCCGCCTCTG
CACAAGTGCGGTGTTTGAGCGCGTGCACAACGGGATGGTGAGATGCGCTT
TCAGATGCTAGCCCCCCCCGGGGGGCCGCGCTCAACGGGCCTCAGCTATA
CTTCGAAGTAGATGTGAACTGTCATCTATCATGACCTCTCTAACAATGGG
TTCACATGTACAGTAAGAGAATGAAGTATGTGTTAGTTAGCTGCAATAAT
TCAAATACGCCCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:2529130..2530842+

>mRNA_S-ischiensis_contig15.3831.1 ID=mRNA_S-ischiensis_contig15.3831.1|Name=mRNA_S-ischiensis_contig15.3831.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig15:2529130..2530842+ (Schizocladia ischiensis KU_0333)
ATGTACTACTGTGTGCCTTTGCTGGTGCTGCAGCTGCTGAGGGAGTATGA
GGCGGCCCAGCAGGGGGCGGAGCCGGGCTCGAGGTGCACGGTGGCCAGGG
CTCCCCACCAGATGTACTACTGTGTGCCTTTGCTGGTGCTGCAGCTGCTG
AGGGAGTATGAGGCGGCCCAGCAGGGGGCGGAGCCGGGCTCGAGGTGCAC
GGTGGCCAGGGCTCCCCACCAGATCCCTTTCAAGATGATGGACAGCAACG
ACCCGCTGCGCAAGAAGGAGAGGGATCGCCTGAGGAGCATACAGAGGCTC
AAGAAGAAGAAGCGGGGGGGGCAGTAGATCCCTTTCAAGATGATGGACAG
CAACGACCCGCTGCGCAAGAAGGAGAGGGATCGCCTGAGGAGCATACAGA
GGCTCAAGAAGAAGAAGCGGGGGGGGCAGTAG
back to top