mRNA_S-ischiensis_contig15.3823.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3823.1
Unique NamemRNA_S-ischiensis_contig15.3823.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: D7FK88_ECTSI (SANT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK88_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.530e-40
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  524 TKVPGSKLGPGRWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSM 919
            +K P +K    RWRTHR  EDY N+CG IMY  ++ GPFGY+S   RFPMERP+ LG+ +   R+ TVIERW+P +VALFEGA+SVHGK FH V+  ++ KT  +V+EFYY WK T+HYKQWK+ F AE+++
Sbjct:  385 SKGPSNKPKEMRWRTHRMVEDYTNVCGKIMYGHVRTGPFGYNSVEGRFPMERPTTLGMIKAGMRRPTVIERWSPYDVALFEGAISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMFRAEQAI 516          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A6H5KPS5_9PHAE (SANT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.650e-40
Identity = 76/132 (57.58%), Postives = 97/132 (73.48%), Query Frame = 2
Query:  524 TKVPGSKLGPGRWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSM 919
            +K P +K    RWRTHR  EDY N+CG IMY  ++ GPFGY+S   RFPMERP+ LG+ +   R+ TVIERW+P +VALFEGA+SVHGK FH V+  +  KT  +V+EFYY WK T+HYKQWKA F AE+++
Sbjct:  584 SKGPSNKPKEMRWRTHRMVEDYTNICGKIMYGHVRTGPFGYNSVEGRFPMERPTTLGMIKAGIRRPTVIERWSPHDVALFEGAISVHGKVFHKVAEEIDGKTVADVVEFYYMWKKTNHYKQWKAMFRAEQAI 715          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A7S3HK57_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK57_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.150e-38
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  557 RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQF 901
            RWR H  TEDYVN+ G IMYP    GP+GYD+   RFP+E+ S LG   C  RK TVIE+W+P EVA+FE AM+++GK FH V + V+TK+TQEVIEFYY WK T+HYK+WK  +
Sbjct:   71 RWRPHGITEDYVNIIGEIMYPKQTFGPYGYDAENGRFPVEKMSSLGWLLCPLRKPTVIEKWSPIEVAVFEAAMTLYGKNFHTVQKYVKTKSTQEVIEFYYDWKKTNHYKEWKKNY 185          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A835Z5U6_9STRA (SANT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U6_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.670e-37
Identity = 66/133 (49.62%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  509 MDGMGTKVPG-SKLGPGRWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFH 904
            MDG   ++ G  +  P RWRTHR  +D VN+CGN MYP + +GP+GY   A  + +ER +ML + Q   R+ + +E+W+P EVA FEGAM ++GK+FH ++  V TKT Q+ IEFYY WK+T HYKQWK  F+
Sbjct:    1 MDGYRPRLSGWRRKEPQRWRTHRMVDDLVNLCGNSMYPQVSMGPYGYRPEAGSYALERAAMLSMIQHPLRRPSAVEQWSPLEVAKFEGAMCIYGKQFHKIAAEVGTKTCQQAIEFYYVWKLTGHYKQWKKVFY 133          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A4D9CXF5_9STRA (SANT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXF5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.340e-37
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 2
Query:  524 TKVPGSKLGPG------RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQF 901
            +K+ G+  G G      RWR  R  EDYVN+ G++MYP +  GP+GYD      P+ERP+ LG+  C AR+ TV+E W+P EVA FEGA+ + GK F+ +S+ + +K+T+E IEFYY WKMTSHY+QWK  F
Sbjct:   80 SKIEGAGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSF 211          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A7S0KBC3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBC3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.470e-35
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  503 SIMDGMGTKVPGSKLGPGRWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAE 910
            + + G+ +K   +++   RWR HRA EDY+++ G+IMYP    G FGY+S    +P+ERP+ LG+     R+ TVIE+W+P EVA FE A++++GK FH V + V+TK+T+E++EFYY WK TSHYK+WK Q   E
Sbjct:  225 TALPGVESKRNNTQIKEYRWRAHRAAEDYISLVGDIMYPGTYFGAFGYNSDKGNYPVERPNTLGLLTSPLRRPTVIEKWSPYEVASFEAALTLYGKVFHSVQKVVKTKSTKEIVEFYYVWKKTSHYKRWKQQHEPE 360          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A6U0ZH30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZH30_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.100e-34
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 2
Query:  557 RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSMEDAGDAEE 943
            RWRT +  EDY+ M   +MYP I++GPFGYD    RFP+ER   LG      R+ +VIERW+P E+A FEGA+++ GK FH V RAV++KTT+EV+EFYY WK T+HY  WK  +  E    + GD EE
Sbjct:   66 RWRTTQMAEDYMEMVSRLMYPPIQIGPFGYDPLKGRFPVERLHALGYITNPLRRPSVIERWSPYEIAKFEGAIALFGKHFHKVQRAVESKTTKEVVEFYYVWKKTAHYDHWKRIYEPEMIPVEDGDDEE 194          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A7S0UFW2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFW2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.700e-33
Identity = 59/123 (47.97%), Postives = 89/123 (72.36%), Query Frame = 2
Query:  557 RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSMED 925
            RWR H+  EDY N+ G++MYPA +   +GY+   R +P+E+ S+LG  +   R+ TVIE+W+P E+ +FEG+M  +GK+F  VS+ + TKTTQEVI+FYY WK T+HYK+WK Q+ +++ + D
Sbjct:  182 RWRVHQMAEDYTNLVGSMMYPATQFHSYGYNPQEREYPIEKISLLGFMKSPLRRPTVIEKWSPYEIGIFEGSMLHYGKDFRNVSKQIGTKTTQEVIDFYYIWKKTAHYKRWKEQYISDEELID 304          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A448Z6P5_9STRA (SANT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6P5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.800e-32
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  557 RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSM 919
            RWR H+  EDY  + G +MYP  +   +GYD   R++PME+ S+L   Q   R+ T+IE+W+P E+A+FEG++  +GKEF  VS+ + TKTT+EVI+FYY WK T HYK+WK QF +++ +
Sbjct:  217 RWRVHQMAEDYTTLVGRMMYPVTQFNNYGYDPLMRQYPMEKISLLSFIQSPLRRPTIIEKWSPYEIAVFEGSLFHYGKEFREVSKQIGTKTTREVIDFYYIWKKTGHYKKWKEQFISDEDL 337          
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Match: A0A7S4RT22_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RT22_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.160e-31
Identity = 54/124 (43.55%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  557 RWRTHRATEDYVNMCGNIMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVALFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHAEKSMEDA 928
            RWR H+  +DY+ + GNIMYP+  +GP+ Y     ++P+ER + LG+     R+ + IE+W+P E+A+FE ++S++GK FH V + V++KTT+E+IEFYY WK +SHY++WK Q+  +   E++
Sbjct:  117 RWRAHQMADDYITLAGNIMYPSTYLGPYAYTHTHGQYPIERLTTLGLLTNPCRRPSPIEKWSPYEIAMFEASLSLYGKVFHKVQKIVRSKTTKEIIEFYYIWKKSSHYRRWKGQYEVDIGSEES 240          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK88_ECTSI1.530e-4056.82SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KPS5_9PHAE1.650e-4057.58SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3HK57_9STRA1.150e-3859.13Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835Z5U6_9STRA1.670e-3749.62SANT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9CXF5_9STRA3.340e-3750.00SANT domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0KBC3_9STRA1.470e-3547.79Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A6U0ZH30_9STRA1.100e-3451.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0UFW2_9STRA4.700e-3347.97Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448Z6P5_9STRA4.800e-3247.93SANT domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7S4RT22_9STRA1.160e-3143.55Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2463154..2465198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue2.2e-39
Seed eggNOG ortholog2880.D7FK88
Preferred nameRCOR3
KEGG koko:K11829
KEGG Pathwayko05016,map05016
GOsGO:0000122,GO:0000785,GO:0000981,GO:0000982,GO:0001067,GO:0001078,GO:0001227,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007596,GO:0007599,GO:0008134,GO:0008150,GO:0008152,GO:0008593,GO:0009611,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033558,GO:0034101,GO:0035065,GO:0035067,GO:0035601,GO:0036211,GO:0042060,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045652,GO:0045654,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0060968,GO:0061085,GO:0061086,GO:0065007,GO:0065008,GO:0070013,GO:0070933,GO:0071704,GO:0071840,GO:0080090,GO:0090239,GO:0090241,GO:0090308,GO:0090309,GO:0097159,GO:0098732,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905268,GO:1905269,GO:1990391,GO:2000026,GO:2000112,GO:2000113,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.transcription corepressor activity
EggNOG OGsKOG1194@1,KOG1194@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-17_003180.1
Exons1
Model size2045
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3823.1prot_S-ischiensis_contig15.3823.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2463161..2464210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.8884287-UTR-S-ischiensis_contig15:2463153..24631601622815770.8884287-UTR-S-ischiensis_contig15:2463153..2463160Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2463154..2463160 +
1695739906.4947758-UTR-S-ischiensis_contig15:2463153..24631601695739906.4947758-UTR-S-ischiensis_contig15:2463153..2463160Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2463154..2463160 +
1622815770.9152894-UTR-S-ischiensis_contig15:2464210..24651981622815770.9152894-UTR-S-ischiensis_contig15:2464210..2465198Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2464211..2465198 +
1695739906.5153224-UTR-S-ischiensis_contig15:2464210..24651981695739906.5153224-UTR-S-ischiensis_contig15:2464210..2465198Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2464211..2465198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.9042892-CDS-S-ischiensis_contig15:2463160..24642101622815770.9042892-CDS-S-ischiensis_contig15:2463160..2464210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2463161..2464210 +
1695739906.5075576-CDS-S-ischiensis_contig15:2463160..24642101695739906.5075576-CDS-S-ischiensis_contig15:2463160..2464210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2463161..2464210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3823.1

>prot_S-ischiensis_contig15.3823.1 ID=prot_S-ischiensis_contig15.3823.1|Name=mRNA_S-ischiensis_contig15.3823.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=350bp
MSSDSAESRKPVRGPSPVPDSKKPARGPSPVPESKGSGEDASRRSRRRSE
GSDAGSNASLGSFGPSQEPSTDAAARQARKRSRPPGFGLGPGKGTDQESG
NGGSGSKPGGGSAASGGTGSGAGSGPEVVPTPATGSATPPPTRRGPGRPP
RARGRGRGRGRGRGRSIMDGMGTKVPGSKLGPGRWRTHRATEDYVNMCGN
IMYPAIKVGPFGYDSGARRFPMERPSMLGITQCYARKTTVIERWNPREVA
LFEGAMSVHGKEFHLVSRAVQTKTTQEVIEFYYTWKMTSHYKQWKAQFHA
EKSMEDAGDAEEDEDEMDESESESAGSDSDDGHGMSGSAASGSRRGFSR*
back to top

mRNA from alignment at S-ischiensis_contig15:2463154..2465198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3823.1 ID=mRNA_S-ischiensis_contig15.3823.1|Name=mRNA_S-ischiensis_contig15.3823.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2045bp|location=Sequence derived from alignment at S-ischiensis_contig15:2463154..2465198+ (Schizocladia ischiensis KU_0333)
AGCGATCATGTCGAGCGATTCCGCGGAGAGTAGGAAGCCGGTCCGGGGCC CCTCCCCGGTTCCCGACAGTAAGAAGCCTGCCCGGGGGCCGTCCCCGGTG CCCGAGTCCAAAGGTTCCGGTGAAGACGCCAGCCGGCGCTCGCGAAGAAG GTCCGAAGGGTCGGATGCGGGATCCAACGCGAGCTTAGGGAGCTTTGGCC CCTCCCAGGAGCCCTCGACAGATGCAGCGGCGCGGCAGGCACGCAAGCGC AGTCGTCCCCCGGGTTTTGGCTTGGGGCCAGGAAAGGGGACAGACCAGGA GTCCGGAAACGGGGGCTCGGGGAGCAAGCCTGGTGGCGGCAGCGCAGCAT CGGGAGGAACGGGCTCAGGGGCGGGATCGGGGCCCGAGGTGGTGCCCACG CCTGCGACAGGATCGGCGACGCCGCCGCCTACGAGGAGAGGCCCTGGCCG GCCCCCTCGCGCCCGTGGCCGAGGACGCGGGCGCGGCCGGGGTCGGGGCC GTTCCATCATGGACGGCATGGGCACCAAGGTTCCGGGCAGCAAGCTAGGC CCGGGTCGGTGGCGCACGCACCGCGCGACCGAAGACTACGTCAACATGTG CGGAAACATCATGTACCCGGCCATCAAGGTGGGGCCCTTTGGTTACGACT CCGGCGCGCGCCGCTTCCCGATGGAGCGCCCGTCCATGCTGGGCATCACG CAGTGCTACGCCAGGAAGACCACCGTGATCGAGAGGTGGAACCCGCGAGA GGTGGCCCTCTTCGAGGGGGCCATGAGCGTCCACGGCAAGGAGTTCCACC TGGTGTCCCGGGCGGTGCAGACCAAGACGACGCAGGAGGTGATTGAGTTC TACTACACGTGGAAGATGACCTCGCACTACAAGCAATGGAAGGCACAGTT CCACGCCGAGAAGAGCATGGAGGACGCGGGGGACGCAGAGGAGGACGAGG ACGAGATGGACGAGTCTGAGAGCGAATCGGCGGGCAGCGACAGCGACGAT GGGCACGGCATGAGCGGGAGTGCGGCGAGTGGCAGCAGGAGGGGGTTCAG CAGGTAGGGCCGCAGGGGCGCGCTACTTGTGTGCCCACGGCGCTGGGGCC GGTGGTCGGGGGCGTGAGCAGCGAGTGGGGGAGGTGGAATGTTTTCAAGC CTGGTGTACTGCGGCGGTTGTGCTCGGCGCCTGCGCGAGTGAAGTGGCTG TGCGGCGTGTTTTTTTTCGTTCTTCTTTCTCGACAGAGCTGTGCATGCAC AATGTGGGTGGCACAGAGTGGGCGGCACCTGTGAATCTACTGCTAGCAGC ACACGGCTGTGGCCCGTACACGGGTGCGCATATATAGCCCCGGCGCCGGA ATTTTGATTTGTGGGTGTGGTGTCGCTTTGGTGGCACCCAGAGATGTGCC GACGTGACCCGTTGCTGAGCGTACAAGCACTTTTAGCGCCCTGGTGGAGG GTGTCGACGTGGTGAGAAAGCTCCGTGTCGATGGGAGGTCTGGGCCGAGA GGCTGCCCCCAGCAAGTGAGGTCTCTCAAACCGCATGACCCGGCCGGCCC TTGCTTAGAGCTGTGCAGTACTTCGAAGTACAGTATTGTGGCGGCAGCCC GTTCAGGGACCGCCAATGGTTGGGCCGGGGCTTTCCCCCTCAAGGCTCGC CCTTGCCCCCCGGGTAGGTGCCTGTACATGGTCTCCTGCGGGCAAAGCAT CTGCTGTGTGCACTGCCGTGCGGGAAGAAAAATATTCGATTAGTTTTGAA GATTTAGATTATGTTTGTCAAAACAGATCCAGCTGCCTTCTTGAATGAGT GAGGGCCCCATGCGGCGGGTGGCCTGGCCTGAGACGGGTCGGTCACGCTT GGGCTGCGACGCCTCGCCCTTGGCGCGTTGCGTCGCTTGCCTGAATTTGC CACATGCACCGACTGCCTGGGACCTCTTGGCAGAGCCGTGCCCCCCCGGA CTTGGCTCTCTCCCCTGGCCGCCACGTGCCCACAACCCACAATGCCCCTA AAATATACTTCGAAGTACTGTTACAGTACTGCTTGGAAGTACTTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:2463154..2465198+

>mRNA_S-ischiensis_contig15.3823.1 ID=mRNA_S-ischiensis_contig15.3823.1|Name=mRNA_S-ischiensis_contig15.3823.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2100bp|location=Sequence derived from alignment at S-ischiensis_contig15:2463154..2465198+ (Schizocladia ischiensis KU_0333)
ATGTCGAGCGATTCCGCGGAGAGTAGGAAGCCGGTCCGGGGCCCCTCCCC
GGTTCCCGACAGTAAGAAGCCTGCCCGGGGGCCGTCCCCGGTGCCCGAGT
CCAAAGGTTCCGGTGAAGACGCCAGCCGGCGCTCGCGAAGAAGGTCCGAA
GGGTCGGATGCGGGATCCAACGCGAGCTTAGGGAGCTTTGGCCCCTCCCA
GGAGCCCTCGACAGATGCAGCGGCGCGGCAGGCACGCAAGCGCAGTCGTC
CCCCGGGTTTTGGCTTGGGGCCAGGAAAGGGGACAGACCAGGAGTCCGGA
AACGGGGGCTCGGGGAGCAAGCCTGGTGGCGGCAGCGCAGCATCGGGAGG
AACGGGCTCAGGGGCGGGATCGGGGCCCGAGGTGGTGCCCACGCCTGCGA
CAGGATCGGCGACGCCGCCGCCTACGAGGAGAGGCCCTGGCCGGCCCCCT
CGCGCCCGTGGCCGAGGACGCGGGCGCGGCCGGGGTCGGGGCCGTTCCAT
CATGGACGGCATGGGCACCAAGGTTCCGGGCAGCAAGCTAGGCCCGGGTC
GGTGGCGCACGCACCGCGCGACCGAAGACTACGTCAACATGTGCGGAAAC
ATCATGTACCCGGCCATCAAGGTGGGGCCCTTTGGTTACGACTCCGGCGC
GCGCCGCTTCCCGATGGAGCGCCCGTCCATGCTGGGCATCACGCAGTGCT
ACGCCAGGAAGACCACCGTGATCGAGAGGTGGAACCCGCGAGAGGTGGCC
CTCTTCGAGGGGGCCATGAGCGTCCACGGCAAGGAGTTCCACCTGGTGTC
CCGGGCGGTGCAGACCAAGACGACGCAGGAGGTGATTGAGTTCTACTACA
CGTGGAAGATGACCTCGCACTACAAGCAATGGAAGGCACAGTTCCACGCC
GAGAAGAGCATGGAGGACGCGGGGGACGCAGAGGAGGACGAGGACGAGAT
GGACGAGTCTGAGAGCGAATCGGCGGGCAGCGACAGCGACGATGGGCACG
GCATGAGCGGGAGTGCGGCGAGTGGCAGCAGGAGGGGGTTCAGCAGGTAG
ATGTCGAGCGATTCCGCGGAGAGTAGGAAGCCGGTCCGGGGCCCCTCCCC
GGTTCCCGACAGTAAGAAGCCTGCCCGGGGGCCGTCCCCGGTGCCCGAGT
CCAAAGGTTCCGGTGAAGACGCCAGCCGGCGCTCGCGAAGAAGGTCCGAA
GGGTCGGATGCGGGATCCAACGCGAGCTTAGGGAGCTTTGGCCCCTCCCA
GGAGCCCTCGACAGATGCAGCGGCGCGGCAGGCACGCAAGCGCAGTCGTC
CCCCGGGTTTTGGCTTGGGGCCAGGAAAGGGGACAGACCAGGAGTCCGGA
AACGGGGGCTCGGGGAGCAAGCCTGGTGGCGGCAGCGCAGCATCGGGAGG
AACGGGCTCAGGGGCGGGATCGGGGCCCGAGGTGGTGCCCACGCCTGCGA
CAGGATCGGCGACGCCGCCGCCTACGAGGAGAGGCCCTGGCCGGCCCCCT
CGCGCCCGTGGCCGAGGACGCGGGCGCGGCCGGGGTCGGGGCCGTTCCAT
CATGGACGGCATGGGCACCAAGGTTCCGGGCAGCAAGCTAGGCCCGGGTC
GGTGGCGCACGCACCGCGCGACCGAAGACTACGTCAACATGTGCGGAAAC
ATCATGTACCCGGCCATCAAGGTGGGGCCCTTTGGTTACGACTCCGGCGC
GCGCCGCTTCCCGATGGAGCGCCCGTCCATGCTGGGCATCACGCAGTGCT
ACGCCAGGAAGACCACCGTGATCGAGAGGTGGAACCCGCGAGAGGTGGCC
CTCTTCGAGGGGGCCATGAGCGTCCACGGCAAGGAGTTCCACCTGGTGTC
CCGGGCGGTGCAGACCAAGACGACGCAGGAGGTGATTGAGTTCTACTACA
CGTGGAAGATGACCTCGCACTACAAGCAATGGAAGGCACAGTTCCACGCC
GAGAAGAGCATGGAGGACGCGGGGGACGCAGAGGAGGACGAGGACGAGAT
GGACGAGTCTGAGAGCGAATCGGCGGGCAGCGACAGCGACGATGGGCACG
GCATGAGCGGGAGTGCGGCGAGTGGCAGCAGGAGGGGGTTCAGCAGGTAG
back to top