mRNA_S-ischiensis_contig15.3650.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3650.1
Unique NamemRNA_S-ischiensis_contig15.3650.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:1236366..1237088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3650.1prot_S-ischiensis_contig15.3650.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 1236611..1237027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0264277-UTR-S-ischiensis_contig15:1236365..12366101622815742.0264277-UTR-S-ischiensis_contig15:1236365..1236610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 1236366..1236610 +
1695739887.3113198-UTR-S-ischiensis_contig15:1236365..12366101695739887.3113198-UTR-S-ischiensis_contig15:1236365..1236610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 1236366..1236610 +
1622815742.0469267-UTR-S-ischiensis_contig15:1237027..12370881622815742.0469267-UTR-S-ischiensis_contig15:1237027..1237088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 1237028..1237088 +
1695739887.3306336-UTR-S-ischiensis_contig15:1237027..12370881695739887.3306336-UTR-S-ischiensis_contig15:1237027..1237088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 1237028..1237088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0370357-CDS-S-ischiensis_contig15:1236610..12370271622815742.0370357-CDS-S-ischiensis_contig15:1236610..1237027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1236611..1237027 +
1695739887.320463-CDS-S-ischiensis_contig15:1236610..12370271695739887.320463-CDS-S-ischiensis_contig15:1236610..1237027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1236611..1237027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3650.1

>prot_S-ischiensis_contig15.3650.1 ID=prot_S-ischiensis_contig15.3650.1|Name=mRNA_S-ischiensis_contig15.3650.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
MKQKLCKAGCSPSPKPNSKTQSIGTCTLVPACTYQQQLAQHAHGLGYTCP
KIGGIGSAMQLGWEQCPGLDGRVHLLLREAFAFVSQGRTKGSGRPAPRWQ
SPRASACTSLGTSSISAPTGSSGYGGQPPPYHTSWHSW*
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mRNA from alignment at S-ischiensis_contig15:1236366..1237088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3650.1 ID=mRNA_S-ischiensis_contig15.3650.1|Name=mRNA_S-ischiensis_contig15.3650.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=723bp|location=Sequence derived from alignment at S-ischiensis_contig15:1236366..1237088+ (Schizocladia ischiensis KU_0333)
GACATGGAAAGACAGTTCTTCATTAGATTTACAAGTCTCGATCGGCTCAC
AGCGTAGTACTTCGAAGTATTTACAAGCTCAGGCTCCACGGCACTGTACT
TGGAGGTACACTGGCAGTAGTACACAGGTCTTCATGCTCCTGCAGAACCA
ACTGGGCCGCTGACGAGTTCATCCGACCCAGTGCCGAAAATCAAGTAATA
CTTTAGTACTTGTACTCAAGTACCACGACCGCCCCCAAAGGCAGCATGAA
GCAAAAACTGTGCAAGGCAGGGTGCAGCCCGTCTCCGAAACCCAACTCCA
AGACACAATCTATAGGCACGTGCACGCTGGTACCTGCCTGCACATACCAA
CAACAGCTAGCTCAACATGCCCACGGCCTTGGCTACACGTGCCCAAAGAT
TGGGGGCATCGGCTCGGCAATGCAGCTTGGCTGGGAACAGTGTCCCGGCC
TCGATGGCCGTGTGCACCTCCTCCTCCGTGAGGCATTTGCGTTCGTATCC
CAGGGCAGGACAAAAGGGTCAGGACGTCCTGCTCCCCGATGGCAAAGCCC
GCGGGCCTCTGCTTGCACGTCCTTGGGAACTTCCTCCATTTCAGCCCCCA
CTGGCTCTTCAGGATATGGAGGACAGCCTCCCCCTTATCACACTTCTTGG
CATTCTTGGTGACCCGTCCATCATACCTTCCCCTCTTCAACAACATGGAG
CCAAACTTCGAGGAAGAGCTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:1236366..1237088+

>mRNA_S-ischiensis_contig15.3650.1 ID=mRNA_S-ischiensis_contig15.3650.1|Name=mRNA_S-ischiensis_contig15.3650.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig15:1236366..1237088+ (Schizocladia ischiensis KU_0333)
ATGAAGCAAAAACTGTGCAAGGCAGGGTGCAGCCCGTCTCCGAAACCCAA
CTCCAAGACACAATCTATAGGCACGTGCACGCTGGTACCTGCCTGCACAT
ACCAACAACAGCTAGCTCAACATGCCCACGGCCTTGGCTACACGTGCCCA
AAGATTGGGGGCATCGGCTCGGCAATGCAGCTTGGCTGGGAACAGTGTCC
CGGCCTCGATGGCCGTGTGCACCTCCTCCTCCGTGAGGCATTTGCGTTCG
TATCCCAGGGCAGGACAAAAGGGTCAGGACGTCCTGCTCCCCGATGGCAA
AGCCCGCGGGCCTCTGCTTGCACGTCCTTGGGAACTTCCTCCATTTCAGC
CCCCACTGGCTCTTCAGGATATGGAGGACAGCCTCCCCCTTATCACACTT
CTTGGCATTCTTGGTGAATGAAGCAAAAACTGTGCAAGGCAGGGTGCAGC
CCGTCTCCGAAACCCAACTCCAAGACACAATCTATAGGCACGTGCACGCT
GGTACCTGCCTGCACATACCAACAACAGCTAGCTCAACATGCCCACGGCC
TTGGCTACACGTGCCCAAAGATTGGGGGCATCGGCTCGGCAATGCAGCTT
GGCTGGGAACAGTGTCCCGGCCTCGATGGCCGTGTGCACCTCCTCCTCCG
TGAGGCATTTGCGTTCGTATCCCAGGGCAGGACAAAAGGGTCAGGACGTC
CTGCTCCCCGATGGCAAAGCCCGCGGGCCTCTGCTTGCACGTCCTTGGGA
ACTTCCTCCATTTCAGCCCCCACTGGCTCTTCAGGATATGGAGGACAGCC
TCCCCCTTATCACACTTCTTGGCATTCTTGGTGA
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