mRNA_S-ischiensis_contig15.3551.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3551.1
Unique NamemRNA_S-ischiensis_contig15.3551.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:  106 MEYERALFRVYDRSLESLRHDAPCLAGYPASKPSALCFILQKALLLTAAITFSMLVCLHRNFVNQAGCLGPLVEAAAWEQGVAV 357
            MEYERALFRVYD+S+E          G+ + +  + C +LQK  L+ +A  F+ LV LH  FVN+ GCL PL+E AA  +GV +
Sbjct:    1 MEYERALFRVYDKSME----------GFHSREVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAASREGVLI 74
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BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Match: D8LRC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 7.330e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:  106 MEYERALFRVYDRSLESLRHDAPCLAGYPASKPSALCFILQKALLLTAAITFSMLVCLHRNFVNQAGCLGPLVEAAAWEQGVAV 357
            MEYERALFRVYD+S+E          G+ +    + C +LQK +L+ +A  F+ L  LH  FVN+ GCL PL+E AA  +GV +
Sbjct:    1 MEYERALFRVYDKSME----------GFHSRGVRSACNLLQKLVLVASAGLFAALFLLHHQFVNKPGCLAPLLEEAASREGVLI 74
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BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Match: W7UBT1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBT1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.080e-7
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  106 MEYERALFRVYDRSLESLRHDAPCLAGYPASKPSALCFILQKALLLTAAITFSMLVCLHRNFVNQAGCL 312
            M++E+AL+RVYDR+L+ L  D P +   P +KP  LC I    L   A    ++   LH NFVN  GCL
Sbjct:    1 MDFEQALYRVYDRTLDGLLQDRPLVENVPQTKPRYLCNICLHGLWFFALTLLTIFWGLHLNFVNSPGCL 69
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BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Match: A0A7S4DCY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY7_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 1.430e-7
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  106 MEYERALFRVYDRSLESLRHDAPCLAGYPASKPSALCFILQKALLLTAAITFSMLVCLHRNFVNQAGCLGPLVE 327
            ME+ERALFRVYDRSLES++ D+P       ++PS +    QK L++ A     +   LH  FV Q GCL   +E
Sbjct:    1 MEFERALFRVYDRSLESIQLDSPWFGN---ARPSVILKWSQKILMIVALGMIVLTATLHTTFVEQPGCLKQKLE 71
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BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Match: A0A482SLQ4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLQ4_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-6
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  106 MEYERALFRVYDRSLESL-RHDAPCLAGYPASKPSALCFILQKALLLTAAITFSMLVCLHRNFVNQAGCL 312
            ME+ERAL+RVY+RS+ES+ + + P L   P  K S  C + Q  +LL      S  + LH  +V  AGCL
Sbjct:    1 MEFERALYRVYERSIESIMQEEDPSLQSEPIYKKS--CKLFQYFILLITLFLLSCFIFLHTTYVGSAGCL 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JH19_9PHAE2.080e-1246.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRC9_ECTSI7.330e-1245.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7UBT1_9STRA1.080e-743.48Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S4DCY7_HETAK1.430e-744.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SLQ4_9ARCH1.070e-642.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:635664..636186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_003000.1
Hectar predicted targeting categoryother localisation
Exons2
Model size359
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3551.1prot_S-ischiensis_contig15.3551.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 635664..636081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.8389115-CDS-S-ischiensis_contig15:635663..6357161622815748.8389115-CDS-S-ischiensis_contig15:635663..635716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 635664..635716 -
1695739891.3481038-CDS-S-ischiensis_contig15:635663..6357161695739891.3481038-CDS-S-ischiensis_contig15:635663..635716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 635664..635716 -
1622815748.8592582-CDS-S-ischiensis_contig15:635882..6360811622815748.8592582-CDS-S-ischiensis_contig15:635882..636081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 635883..636081 -
1695739891.3614993-CDS-S-ischiensis_contig15:635882..6360811695739891.3614993-CDS-S-ischiensis_contig15:635882..636081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 635883..636081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.8735743-UTR-S-ischiensis_contig15:636081..6361861622815748.8735743-UTR-S-ischiensis_contig15:636081..636186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 636082..636186 -
1695739891.370351-UTR-S-ischiensis_contig15:636081..6361861695739891.370351-UTR-S-ischiensis_contig15:636081..636186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 636082..636186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3551.1

>prot_S-ischiensis_contig15.3551.1 ID=prot_S-ischiensis_contig15.3551.1|Name=mRNA_S-ischiensis_contig15.3551.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
MEYERALFRVYDRSLESLRHDAPCLAGYPASKPSALCFILQKALLLTAAI
TFSMLVCLHRNFVNQAGCLGPLVEAAAWEQGVAV
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mRNA from alignment at S-ischiensis_contig15:635664..636186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3551.1 ID=mRNA_S-ischiensis_contig15.3551.1|Name=mRNA_S-ischiensis_contig15.3551.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=523bp|location=Sequence derived from alignment at S-ischiensis_contig15:635664..636186- (Schizocladia ischiensis KU_0333)
CATAGCGTGCGTGAGATGGCCCTCTGGTAAGCTAAGTGAGGTTTAATTAA
TAAAACACGCTGTAGGTGTTGCATCAGGCTCGCTGTGCCGCAGAGAGAGG
GGCTGATGGAGTACGAGCGAGCCCTGTTCCGCGTGTACGATAGGAGCTTG
GAGAGCCTGCGGCACGACGCGCCGTGTCTGGCGGGGTACCCCGCGTCCAA
ACCCTCGGCGCTATGCTTCATCCTGCAGAAGGCCCTGCTGCTGACAGCCG
CGATTACATTCTCCATGCTGGTGTGCCTGCACAGGAACTTCGTCAACCAA
GCAGGTGCGGTGCAGGCTGTCCTGCGCACAACCTGGGCATGCTCTTCGTT
GCATAAGCTACAGTATGCACTGAACCTCCCATGCGATTCAGTAGTCCATA
GAGTGGAGGTTCCTCCCCCGACCCCATCGGTCCCCTGTCCCCTGGGCCCG
GCACGCCCCGCGCCCCCCAGGCTGCCTGGGCCCCCTCGTGGAAGCGGCGG
CGTGGGAGCAAGGGGTGGCGGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:635664..636186-

>mRNA_S-ischiensis_contig15.3551.1 ID=mRNA_S-ischiensis_contig15.3551.1|Name=mRNA_S-ischiensis_contig15.3551.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig15:635664..636186- (Schizocladia ischiensis KU_0333)
ATGGAGTACGAGCGAGCCCTGTTCCGCGTGTACGATAGGAGCTTGGAGAG
CCTGCGGCACGACGCGCCGTGTCTGGCGGGGTACCCCGCGTCCAAACCCT
CGGCGCTATGCTTCATCCTGCAGAAGGCCCTGCTGCTGACAGCCGCGATT
ACATTCTCCATGCTGGTGTGCCTGCACAGGAACTTCGTCAACCAAGCAGA
TGGAGTACGAGCGAGCCCTGTTCCGCGTGTACGATAGGAGCTTGGAGAGC
CTGCGGCACGACGCGCCGTGTCTGGCGGGGTACCCCGCGTCCAAACCCTC
GGCGCTATGCTTCATCCTGCAGAAGGCCCTGCTGCTGACAGCCGCGATTA
CATTCTCCATGCTGGTGTGCCTGCACAGGAACTTCGTCAACCAAGCAGGC
TGCCTGGGCCCCCTCGTGGAAGCGGCGGCGTGGGAGCAAGGGGTGGCGGT
AGCTGCCTGGGCCCCCTCGTGGAAGCGGCGGCGTGGGAGCAAGGGGTGGC
GGTA
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