mRNA_S-ischiensis_contig15.3538.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3538.1
Unique NamemRNA_S-ischiensis_contig15.3538.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:531039..531460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size423
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.969069-UTR-S-ischiensis_contig15:531038..5310671622815740.969069-UTR-S-ischiensis_contig15:531038..531067Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 531039..531067 +
1695739886.8804662-UTR-S-ischiensis_contig15:531038..5310671695739886.8804662-UTR-S-ischiensis_contig15:531038..531067Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 531039..531067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.9811711-CDS-S-ischiensis_contig15:531067..5314601622815740.9811711-CDS-S-ischiensis_contig15:531067..531460Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 531068..531460 +
1695739886.890891-CDS-S-ischiensis_contig15:531067..5314601695739886.890891-CDS-S-ischiensis_contig15:531067..531460Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 531068..531460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3538.1prot_S-ischiensis_contig15.3538.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 531068..531460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3538.1

>prot_S-ischiensis_contig15.3538.1 ID=prot_S-ischiensis_contig15.3538.1|Name=mRNA_S-ischiensis_contig15.3538.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
MWRVLRGRVRRSRGIRTRYVFLGVNVPESCLMGQARAMTLGQSCTSVGHP
LPLRRRRAGAAVLTLATLAARVEGSSTPIVGAFVPALPGLAAWAVGRPSW
PPARAGSRCNGRPPLGRAWGRVRPLAVDARG
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mRNA from alignment at S-ischiensis_contig15:531039..531460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3538.1 ID=mRNA_S-ischiensis_contig15.3538.1|Name=mRNA_S-ischiensis_contig15.3538.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=422bp|location=Sequence derived from alignment at S-ischiensis_contig15:531039..531460+ (Schizocladia ischiensis KU_0333)
ACACACACAGCAGAGCGCCTCTTGTGTGCATGTGGCGAGTGCTAAGGGGG
AGAGTGCGGCGATCCAGAGGTATCCGCACCCGGTACGTGTTTTTGGGCGT
TAACGTCCCTGAAAGCTGCCTGATGGGGCAGGCGCGCGCCATGACACTCG
GGCAAAGTTGCACCAGCGTAGGGCATCCGTTGCCCTTGCGACGAAGAAGA
GCTGGAGCCGCCGTCTTGACACTCGCAACGCTCGCAGCCCGAGTCGAAGG
CTCCAGCACGCCGATAGTGGGGGCTTTTGTGCCTGCCTTGCCCGGTTTAG
CGGCCTGGGCGGTCGGGCGGCCGTCCTGGCCACCGGCTCGCGCTGGTTCG
CGCTGTAACGGCAGGCCACCGCTTGGCCGCGCGTGGGGACGGGTCAGGCC
CTTGGCAGTGGATGCACGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:531039..531460+

>mRNA_S-ischiensis_contig15.3538.1 ID=mRNA_S-ischiensis_contig15.3538.1|Name=mRNA_S-ischiensis_contig15.3538.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig15:531039..531460+ (Schizocladia ischiensis KU_0333)
ATGTGGCGAGTGCTAAGGGGGAGAGTGCGGCGATCCAGAGGTATCCGCAC
CCGGTACGTGTTTTTGGGCGTTAACGTCCCTGAAAGCTGCCTGATGGGGC
AGGCGCGCGCCATGACACTCGGGCAAAGTTGCACCAGCGTAGGGCATCCG
TTGCCCTTGCGACGAAGAAGAGCTGGAGCCGCCGTCTTGACACTCGCAAC
GCTCGCAGCCCGAGTCGAAGGCTCCAGCACGCCGATAGTGGGGGCTTTTG
TGCCTGCCTTGCCCGGTTTAGCGGCCTGGGCGGTCGGGCGGCCGTCCTGG
CCACCGGCTCGCGCTGGTTCGCGCTGTAACGGCAGGCCACCGCTTGGCCG
CGCGTGGGGACGGGTCAGGCCCTTGGCAGTGGATGCACGCGGGATGTGGC
GAGTGCTAAGGGGGAGAGTGCGGCGATCCAGAGGTATCCGCACCCGGTAC
GTGTTTTTGGGCGTTAACGTCCCTGAAAGCTGCCTGATGGGGCAGGCGCG
CGCCATGACACTCGGGCAAAGTTGCACCAGCGTAGGGCATCCGTTGCCCT
TGCGACGAAGAAGAGCTGGAGCCGCCGTCTTGACACTCGCAACGCTCGCA
GCCCGAGTCGAAGGCTCCAGCACGCCGATAGTGGGGGCTTTTGTGCCTGC
CTTGCCCGGTTTAGCGGCCTGGGCGGTCGGGCGGCCGTCCTGGCCACCGG
CTCGCGCTGGTTCGCGCTGTAACGGCAGGCCACCGCTTGGCCGCGCGTGG
GGACGGGTCAGGCCCTTGGCAGTGGATGCACGCGGG
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