mRNA_S-ischiensis_contig15.3524.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3524.1
Unique NamemRNA_S-ischiensis_contig15.3524.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:449529..450854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.5229795-CDS-S-ischiensis_contig15:449528..4497551622815733.5229795-CDS-S-ischiensis_contig15:449528..449755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 449529..449755 +
1695739882.9041088-CDS-S-ischiensis_contig15:449528..4497551695739882.9041088-CDS-S-ischiensis_contig15:449528..449755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 449529..449755 +
1622815733.5335855-CDS-S-ischiensis_contig15:450796..4508541622815733.5335855-CDS-S-ischiensis_contig15:450796..450854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 450797..450854 +
1695739882.9132497-CDS-S-ischiensis_contig15:450796..4508541695739882.9132497-CDS-S-ischiensis_contig15:450796..450854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 450797..450854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3524.1prot_S-ischiensis_contig15.3524.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 449529..450854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3524.1

>prot_S-ischiensis_contig15.3524.1 ID=prot_S-ischiensis_contig15.3524.1|Name=mRNA_S-ischiensis_contig15.3524.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
PALGLVGAGGRGQHGDGGRGSGEAESAGPPEGRGEQAGGAAGGGGGGGDG
LVASGVYEGMPATATLPVGVTPATFRSSSEPALGPPTAGGILPSR
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mRNA from alignment at S-ischiensis_contig15:449529..450854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3524.1 ID=mRNA_S-ischiensis_contig15.3524.1|Name=mRNA_S-ischiensis_contig15.3524.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1326bp|location=Sequence derived from alignment at S-ischiensis_contig15:449529..450854+ (Schizocladia ischiensis KU_0333)
CCGGCACTCGGTCTGGTGGGGGCAGGTGGCCGTGGACAGCATGGTGATGG
TGGGCGGGGTAGCGGCGAGGCCGAGTCAGCGGGGCCTCCTGAGGGGCGTG
GTGAGCAGGCTGGTGGTGCTGCTGGCGGCGGCGGCGGCGGCGGCGACGGC
TTAGTTGCCAGCGGGGTGTATGAGGGCATGCCTGCCACAGCCACGCTGCC
TGTTGGGGTGACTCCAGCCACGTTTAGGTGAGCAGCGGTCTGCCACGTCA
GAGTGACGGTGGTGTGCCCGACCAGTGGCGACCATGCGCAGCCGGCGTGG
GCACCTACTTGGACGTTTTGAACTCCCAGCCTACGGCAACTGTAACAGCA
AGTGATATGTGTTTGCTGTGCCTGCGTGCCCTTGGGCAGGCTTCGACGTA
TGAGGCACGTGCACCGTGACTCGGCTGCGAGCGGGCTGGGCAGGGGAAAA
GCAGTGTCCTGAACTCTGTGCTCCACTGTGAAACCCTACTTTGCGTGCTC
GTACTTGTACTTCGAAGCAAGTAAGTTTGTTTATGCGGGGTGCGCCGGGG
AGAAAAGCGAGCACCCCACCCTGCTTTGTGCACGGCAATGGCACAGGGCA
GGGGCACAGCTGCTGTACAAGTAGCACGTAGGACCTGGTGGTTCTCCACG
TGCGGGTCACTGATTCTGCCAATCATTCTGCACAGTTCCGCATGTCCGAC
TACCGTCTGCGTCCAGAATGTACGAGTAGGCCTGCGGCCGACTGGCCGAC
TATAGGTTCAAGCCAGAGGGACAACCGCTGCCACAATTGTATGTGTGGGA
AGCCACTGGCAGCGCCAGACTCGGACCCAGTTGCAGGCCGCCCGGCTACG
CTGTTGCCTCATGGGGGACCCCCTCCCCCCTCCATATGGGACCCCCCGAT
TCCCCGCAGCATGCTTGGAGGATGAAAGCCATTGGCCAAGTATGGGGACT
CGGGCACGGCATGTGTAGCATGGGCACCTTCCAGTGAATAGTATCATAGC
CATCAGGCAAGGTGTGGCTTTGAAGAGTCCGAGTCACCAGCGTCAAATGG
GAAAGTTGTTAGCTACAAGTACTCCCACTCATATCCTCAGGCTTTACTAC
CAGTACATACACAGACATCCACTGGACCCTTAAGGCAACTGCGTGTACAC
GTACCCACCCTTTTCGACTTGCGAGCATTCTAAACCACAGTCCGCGGCGT
GCCACACAAAATCGCTGGGGGCCAAGCAACCCCCACTGGCCGGCCCGACC
CCCTGCACGCACTGGCAGGTCTTCTTCGGAGCCAGCCTTGGGACCCCCCA
CAGCAGGCGGTATCCTACCCAGCCGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:449529..450854+

>mRNA_S-ischiensis_contig15.3524.1 ID=mRNA_S-ischiensis_contig15.3524.1|Name=mRNA_S-ischiensis_contig15.3524.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig15:449529..450854+ (Schizocladia ischiensis KU_0333)
CCGGCACTCGGTCTGGTGGGGGCAGGTGGCCGTGGACAGCATGGTGATGG
TGGGCGGGGTAGCGGCGAGGCCGAGTCAGCGGGGCCTCCTGAGGGGCGTG
GTGAGCAGGCTGGTGGTGCTGCTGGCGGCGGCGGCGGCGGCGGCGACGGC
TTAGTTGCCAGCGGGGTGTATGAGGGCATGCCTGCCACAGCCACGCTGCC
TGTTGGGGTGACTCCAGCCACGTTTAGCCGGCACTCGGTCTGGTGGGGGC
AGGTGGCCGTGGACAGCATGGTGATGGTGGGCGGGGTAGCGGCGAGGCCG
AGTCAGCGGGGCCTCCTGAGGGGCGTGGTGAGCAGGCTGGTGGTGCTGCT
GGCGGCGGCGGCGGCGGCGGCGACGGCTTAGTTGCCAGCGGGGTGTATGA
GGGCATGCCTGCCACAGCCACGCTGCCTGTTGGGGTGACTCCAGCCACGT
TTAGGTCTTCTTCGGAGCCAGCCTTGGGACCCCCCACAGCAGGCGGTATC
CTACCCAGCCGTGTCTTCTTCGGAGCCAGCCTTGGGACCCCCCACAGCAG
GCGGTATCCTACCCAGCCGT
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