mRNA_S-ischiensis_contig15.3494.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3494.1
Unique NamemRNA_S-ischiensis_contig15.3494.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: D7FWN2_ECTSI (Aminodeoxychorismate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.350e-13
Identity = 67/182 (36.81%), Postives = 81/182 (44.51%), Query Frame = 1
Query:    1 DVPRAFLVFADRFLAFDHEEQRAYALALAP-----------------------GGDG--------PAEADAARWAQEALARIGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAPKMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQIVCTR 453
            DVP  FLVF DRF+AFDHE+ +AY LAL+                        G DG        PA+ DA  W +   A +  L        P  G   G  AT   T PA + G         A+ +           G  C  D   + YE +L EI+RLVG+GETYEVCLTNQIVC R
Sbjct:  703 DVPLGFLVFVDRFVAFDHEQGKAYVLALSHAETSPNDDDDGGGIDVAVNDDRRGNDGQASALTTHPAKDDALDWIRRTAASLRGL-------RPSRGVSEGDAATG--TSPAALNG---------AAGN----------VGTACAMDVHRSRYEQSLEEIMRLVGEGETYEVCLTNQIVCER 856          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: A0A836CDI0_9STRA (ADC synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.470e-12
Identity = 55/153 (35.95%), Postives = 73/153 (47.71%), Query Frame = 1
Query:    1 DVPRAFLVFADRFLAFDHEEQRAYALALAPGGDGPAEADAARWAQEALARIGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAPKMYD----DVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQIVC 447
            +VP  F + ADRF+AFDH+E RAY L+ A        A A+ W +  + ++ +LAS   A +   G                        X        P M+D    DV   G+ CR  R    YE +LRE L L+G GETYEVCLTNQ++C
Sbjct:  190 NVPMGFWIKADRFIAFDHDEHRAYVLSTADS------AGASDWVESTVLKLQELASTHAAKTVANGH---------------------VXXXXXXXXXXPLMHDVKHHDV---GMKCRTSRSKQRYEQDLREALALIGQGETYEVCLTNQVIC 312          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: A0A269ZAS1_9MICO (Aminodeoxychorismate synthase n=2 Tax=Brevibacterium casei TaxID=33889 RepID=A0A269ZAS1_9MICO)

HSP 1 Score: 55.8 bits (133), Expect = 3.900e-6
Identity = 49/145 (33.79%), Postives = 60/145 (41.38%), Query Frame = 1
Query:    7 PRAFLVFADRFLAFDHEEQRAYALALAPGGDGPAEADAARWAQEALARIGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAPKMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQI 441
            P A ++F DR L  DHE+ RAY LAL+  GDG  E D   W  E   RI  +        P                         AA   +  +       D PP  L  R  R  + Y D + E  RL+ DGETYEVCLTN +
Sbjct:  374 PDALMLFLDRALVIDHEQGRAYLLALS--GDGVTEDDCGAWFDETARRIDAIGPDLDRVEP-----------------------GPAAAVHSQFSHGSDTLSDFPPK-LRARHSR--SEYLDLISEAQRLINDGETYEVCLTNML 490          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: UPI0019199077 (aminodeoxychorismate synthase component I n=1 Tax=Brevibacterium casei TaxID=33889 RepID=UPI0019199077)

HSP 1 Score: 52.8 bits (125), Expect = 4.510e-5
Identity = 51/145 (35.17%), Postives = 62/145 (42.76%), Query Frame = 1
Query:    7 PRAFLVFADRFLAFDHEEQRAYALALAPGGDGPAEADAARWAQEALARIGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAPKMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQI 441
            P A ++F DR L  DHE+   Y LAL+  G+G  E D   W  E   +I                     AT    L  G  G   AA T  +  S      D PP  L  R  R  + Y D + E  RL+ DGETYEVCLTN +
Sbjct:  374 PDALMMFLDRALVVDHEQGNVYLLALS--GEGVNEDDCGAWFDETTYQI---------------------ATVEPDLDEGTPGPEKAAHTQLSHGS--DTLTDFPPE-LRARHSR--SEYLDLIAEAQRLINDGETYEVCLTNTL 490          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: A0A5D6YC06_9STRA (Aminodeoxychorismate synthase (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC06_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.220e-5
Identity = 50/157 (31.85%), Postives = 68/157 (43.31%), Query Frame = 1
Query:    4 VPRAFLVFADRFLAFDHEEQRAYALALAP--GGDGPAEA--DAARWAQEALARIGKLASQG-TASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAP---KMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQIVCT 450
            VP A  +FADR L FDH E + Y+++++   G D       +A  W ++   ++ +L  +   A  PL                        AA     SAS P             +V  P R    Y  N+REI RL+ DGETYEVCLTNQ+  T
Sbjct:  462 VPDASFLFADRTLVFDHLESKVYSVSVSMRRGEDSGVCGLEEAIEWHRDVATQLQRLTHEFINARVPLA-----------------------AAAAGARSASDPLRSHWQKQAQQEAVVFYPSRSRRQYGRNIREIQRLIHDGETYEVCLTNQLEAT 595          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: A0A0G4GHK3_VITBC (Aminodeoxychorismate synthase n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GHK3_VITBC)

HSP 1 Score: 52.4 bits (124), Expect = 6.290e-5
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:  343 PDRPPAVYEDNLREILRLVGDGETYEVCLTNQIV 444
            PDRP AVYE N+RE L  + +GETYEVCLTNQ++
Sbjct:  589 PDRPRAVYERNIRECLGWIHEGETYEVCLTNQLI 622          
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Match: K9AIA3_9MICO (Aminodeoxychorismate synthase n=1 Tax=Brevibacterium casei S18 TaxID=1229781 RepID=K9AIA3_9MICO)

HSP 1 Score: 52.0 bits (123), Expect = 8.350e-5
Identity = 50/145 (34.48%), Postives = 62/145 (42.76%), Query Frame = 1
Query:    7 PRAFLVFADRFLAFDHEEQRAYALALAPGGDGPAEADAARWAQEALARIGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAXTATASASAPKMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQI 441
            P A ++F DR L  DHE+   Y LAL+  G+G  E D   W      RI  +     A  P       G  TAA + P+G                      D PP  L  R  R  + Y D + E  RL+ DGETYEVCLTN +
Sbjct:  374 PDALMMFLDRALVVDHEQGSVYLLALS--GEGENEDDCGAWFDVTARRIDAIEPDLDAVEP-------GPETAAHSQPSGGS----------------DSLTDFPPE-LRARHSR--SEYLDLIAEAQRLINDGETYEVCLTNML 490          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWN2_ECTSI3.350e-1336.81Aminodeoxychorismate synthase n=2 Tax=Ectocarpus T... [more]
A0A836CDI0_9STRA1.470e-1235.95ADC synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A269ZAS1_9MICO3.900e-633.79Aminodeoxychorismate synthase n=2 Tax=Brevibacteri... [more]
UPI00191990774.510e-535.17aminodeoxychorismate synthase component I n=1 Tax=... [more]
A0A5D6YC06_9STRA6.220e-531.85Aminodeoxychorismate synthase (Fragment) n=1 Tax=P... [more]
A0A0G4GHK3_VITBC6.290e-567.65Aminodeoxychorismate synthase n=4 Tax=Vitrella bra... [more]
K9AIA3_9MICO8.350e-534.48Aminodeoxychorismate synthase n=1 Tax=Brevibacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:205664..206131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7FWN2
KEGG rclassRC00010,RC01418
KEGG koko:K13950
KEGG ReactionR01716
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008153,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009110,GO:0009396,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0042537,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046482,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046656,GO:0046820,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.4-amino-4-deoxychorismate synthase activity
EggNOG OGsCOG0147@1,COG0512@1,KOG0026@2759,KOG1224@2759
EC2.6.1.85
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.6174011-CDS-S-ischiensis_contig15:205663..2061311622815745.6174011-CDS-S-ischiensis_contig15:205663..206131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 205664..206131 +
1695739889.135819-CDS-S-ischiensis_contig15:205663..2061311695739889.135819-CDS-S-ischiensis_contig15:205663..206131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 205664..206131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3494.1prot_S-ischiensis_contig15.3494.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 205664..206131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3494.1

>prot_S-ischiensis_contig15.3494.1 ID=prot_S-ischiensis_contig15.3494.1|Name=mRNA_S-ischiensis_contig15.3494.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
DVPRAFLVFADRFLAFDHEEQRAYALALAPGGDGPAEADAARWAQEALAR
IGKLASQGTASSPLYGARGGGGATAATTLPAGVKGGSTAAATATASASAP
KMYDDVPPAGLVCRPDRPPAVYEDNLREILRLVGDGETYEVCLTNQIVCT
RLGPGE
back to top

mRNA from alignment at S-ischiensis_contig15:205664..206131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3494.1 ID=mRNA_S-ischiensis_contig15.3494.1|Name=mRNA_S-ischiensis_contig15.3494.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig15:205664..206131+ (Schizocladia ischiensis KU_0333)
GACGTCCCGCGGGCCTTTCTGGTCTTCGCAGACCGTTTCCTGGCGTTTGA CCACGAGGAGCAAAGGGCCTACGCCCTGGCCCTGGCACCCGGCGGCGACG GCCCCGCGGAGGCAGACGCAGCCAGGTGGGCCCAGGAGGCACTCGCTCGC ATCGGGAAGCTCGCCTCGCAGGGCACGGCCTCCTCGCCTTTGTACGGTGC GCGAGGCGGCGGCGGCGCCACCGCCGCCACCACTCTCCCCGCGGGAGTAA AGGGGGGATCCACCGCCGCCGCCACCGCTACAGCGTCAGCATCAGCGCCA AAGATGTACGATGATGTGCCGCCGGCGGGCCTGGTGTGCCGGCCGGACCG TCCGCCGGCAGTGTACGAGGACAACCTGCGGGAGATCCTGCGGCTGGTGG GGGACGGGGAGACGTACGAGGTCTGCCTCACCAACCAGATTGTGTGCACT CGCCTGGGCCCGGGGGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:205664..206131+

>mRNA_S-ischiensis_contig15.3494.1 ID=mRNA_S-ischiensis_contig15.3494.1|Name=mRNA_S-ischiensis_contig15.3494.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig15:205664..206131+ (Schizocladia ischiensis KU_0333)
GACGTCCCGCGGGCCTTTCTGGTCTTCGCAGACCGTTTCCTGGCGTTTGA
CCACGAGGAGCAAAGGGCCTACGCCCTGGCCCTGGCACCCGGCGGCGACG
GCCCCGCGGAGGCAGACGCAGCCAGGTGGGCCCAGGAGGCACTCGCTCGC
ATCGGGAAGCTCGCCTCGCAGGGCACGGCCTCCTCGCCTTTGTACGGTGC
GCGAGGCGGCGGCGGCGCCACCGCCGCCACCACTCTCCCCGCGGGAGTAA
AGGGGGGATCCACCGCCGCCGCCACCGCTACAGCGTCAGCATCAGCGCCA
AAGATGTACGATGATGTGCCGCCGGCGGGCCTGGTGTGCCGGCCGGACCG
TCCGCCGGCAGTGTACGAGGACAACCTGCGGGAGATCCTGCGGCTGGTGG
GGGACGGGGAGACGTACGAGGTCTGCCTCACCAACCAGATTGTGTGCACT
CGCCTGGGCCCGGGGGAGGACGTCCCGCGGGCCTTTCTGGTCTTCGCAGA
CCGTTTCCTGGCGTTTGACCACGAGGAGCAAAGGGCCTACGCCCTGGCCC
TGGCACCCGGCGGCGACGGCCCCGCGGAGGCAGACGCAGCCAGGTGGGCC
CAGGAGGCACTCGCTCGCATCGGGAAGCTCGCCTCGCAGGGCACGGCCTC
CTCGCCTTTGTACGGTGCGCGAGGCGGCGGCGGCGCCACCGCCGCCACCA
CTCTCCCCGCGGGAGTAAAGGGGGGATCCACCGCCGCCGCCACCGCTACA
GCGTCAGCATCAGCGCCAAAGATGTACGATGATGTGCCGCCGGCGGGCCT
GGTGTGCCGGCCGGACCGTCCGCCGGCAGTGTACGAGGACAACCTGCGGG
AGATCCTGCGGCTGGTGGGGGACGGGGAGACGTACGAGGTCTGCCTCACC
AACCAGATTGTGTGCACTCGCCTGGGCCCGGGGGAG
back to top