mRNA_S-ischiensis_contig15.3473.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3473.1
Unique NamemRNA_S-ischiensis_contig15.3473.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3473.1 vs. uniprot
Match: A0A6G1PXI9_9TELE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1PXI9_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-5
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:  161 RFGMDHGYHMGLIGAYKTFSAARFDRDSKVWHFPVEIYKEVLAKARGVPQVRVEELPKAL 340
            +F +D GYH+ +I A+K      +D  ++ W+F +E YK+++   RG+ +V VE LP+A+
Sbjct:  291 KFEVDIGYHVDVIAAFKQMPTKSYDIKTRKWNFSLEDYKKLMDLLRGMAEVEVEPLPRAV 350
[Close]
BLAST of mRNA_S-ischiensis_contig15.3473.1 vs. uniprot
Match: A0A480YNS1_PIG (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=3 Tax=Suidae TaxID=9821 RepID=A0A480YNS1_PIG)

HSP 1 Score: 52.0 bits (123), Expect = 6.680e-5
Identity = 22/61 (36.07%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  161 RFGMDHGYHMGLIGAYKTFSAARFDRDSKVWHFPVEIYKEVLAKARGVPQVRVEELPKALS 343
            RF  D GY   LI  +K   + ++D  ++ W+F +E Y +++ KAR +PQV+++ LPK ++
Sbjct:   84 RFEADIGYSEDLIALFKQMESRKYDVKTRKWNFLLEEYNKLMEKARHLPQVQLDPLPKTVT 144
[Close]
BLAST of mRNA_S-ischiensis_contig15.3473.1 vs. uniprot
Match: A0A287B6H5_PIG (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=38 Tax=Suina TaxID=35497 RepID=A0A287B6H5_PIG)

HSP 1 Score: 52.0 bits (123), Expect = 6.940e-5
Identity = 22/61 (36.07%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  161 RFGMDHGYHMGLIGAYKTFSAARFDRDSKVWHFPVEIYKEVLAKARGVPQVRVEELPKALS 343
            RF  D GY   LI  +K   + ++D  ++ W+F +E Y +++ KAR +PQV+++ LPK ++
Sbjct:  334 RFEADIGYSEDLIALFKQMESRKYDVKTRKWNFLLEEYNKLMEKARHLPQVQLDPLPKTVT 394
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6G1PXI9_9TELE2.010e-536.67SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A480YNS1_PIG6.680e-536.07SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A287B6H5_PIG6.940e-536.07SWI/SNF-related matrix-associated actin-dependent ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:103155..104144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.2512164-CDS-S-ischiensis_contig15:103154..1034511622815732.2512164-CDS-S-ischiensis_contig15:103154..103451Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 103155..103451 +
1695739882.166852-CDS-S-ischiensis_contig15:103154..1034511695739882.166852-CDS-S-ischiensis_contig15:103154..103451Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 103155..103451 +
1622815732.2659314-CDS-S-ischiensis_contig15:103992..1041421622815732.2659314-CDS-S-ischiensis_contig15:103992..104142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 103993..104142 +
1695739882.177176-CDS-S-ischiensis_contig15:103992..1041421695739882.177176-CDS-S-ischiensis_contig15:103992..104142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 103993..104142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3473.1prot_S-ischiensis_contig15.3473.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 103155..104142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3473.1

>prot_S-ischiensis_contig15.3473.1 ID=prot_S-ischiensis_contig15.3473.1|Name=mRNA_S-ischiensis_contig15.3473.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
GGTGGRRAGLHDVKDQQPTRTRYHGLVPRWWRRRRWRGRTLFGEGHTVLP
TPTPIRHGSWLSHGTHRRVQDVQRGKIRQGQQSLAFPGRNLQGGPGQSER
RATGASRGAPQGTVCLAKHWHGRWRQQRRRQPCWWDGGCSRGREGGGAE
back to top

mRNA from alignment at S-ischiensis_contig15:103155..104144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3473.1 ID=mRNA_S-ischiensis_contig15.3473.1|Name=mRNA_S-ischiensis_contig15.3473.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig15:103155..104144+ (Schizocladia ischiensis KU_0333)
GGGGGCACCGGCGGCCGCCGGGCGGGGCTGCATGATGTGAAGGACCAACA
ACCTACTCGCACACGTTATCATGGCCTGGTACCGCGGTGGTGGCGGCGGC
GGCGGTGGAGGGGACGGACCCTGTTTGGCGAGGGTCACACTGTTCTCCCA
ACACCCACCCCGATTCGGCATGGATCATGGCTATCACATGGGACTCATCG
GCGCGTACAAGACGTTCAGCGCGGCAAGATTCGACAGGGACAGCAAAGTT
TGGCATTTCCCGGTAGAAATCTACAAGGAGGTCCTGGCCAAAGCGAGGTG
AGCGTTTTCACATTAACAGTTGCCCTCCAGACAGGCGTGTAAATGGAGGA
CCTTGACCACGCTACTCATGAGAGGTTGACTTTGGAGTTCGGTGCAAGCA
GAGAGCAACTACCACCTGCGCAGCTTCAGAGTTGCGCTGCGTTTTTGAGC
CTAGGAAGCTTGTATGATGTGGAGCGTGGTGTACTGTGTGTCAAGGACGA
CGACTATGCGGCATCTTACTGCAGTGTGTGGTGTGGTTCTGCAAGCGCTT
GCTGGCCGACTCTTTTCCCCTCGTGGCATTCAACAGGGATTTCACAAGCC
TGTGGTAAGCAACGGGAACTTGCCCTGCGGTGCTGTCGTCAAGTCCAGGC
ACCAAGGATGTAGCATATCAAAATGCACGCCTATGGTACAGCGCTGGCTA
AAAGGTTGCTACAGTATATACTTTCAGTAGGCACTCGTACCTACAAGTAC
AGTAGTACGAGTACTTGATGTACTCAAAAGCTTGATTGGGTGGCATGCCC
TGCCCTGTATCGCCTGTCCCCTCTGTGTGCGTGTGCAGAGGCGTGCCACA
GGTGCGAGTCGAGGAGCTCCCCAAGGCACTGTCTGCCTTGCTAAACACTG
GCATGGGCGGTGGCGGCAGCAGCGGCGGAGACAGCCATGTTGGTGGGATG
GAGGGTGCAGCAGGGGGCGCGAGGGAGGAGGAGCAGAAAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:103155..104144+

>mRNA_S-ischiensis_contig15.3473.1 ID=mRNA_S-ischiensis_contig15.3473.1|Name=mRNA_S-ischiensis_contig15.3473.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig15:103155..104144+ (Schizocladia ischiensis KU_0333)
GGGGGCACCGGCGGCCGCCGGGCGGGGCTGCATGATGTGAAGGACCAACA
ACCTACTCGCACACGTTATCATGGCCTGGTACCGCGGTGGTGGCGGCGGC
GGCGGTGGAGGGGACGGACCCTGTTTGGCGAGGGTCACACTGTTCTCCCA
ACACCCACCCCGATTCGGCATGGATCATGGCTATCACATGGGACTCATCG
GCGCGTACAAGACGTTCAGCGCGGCAAGATTCGACAGGGACAGCAAAGTT
TGGCATTTCCCGGTAGAAATCTACAAGGAGGTCCTGGCCAAAGCGAGGGG
GGCACCGGCGGCCGCCGGGCGGGGCTGCATGATGTGAAGGACCAACAACC
TACTCGCACACGTTATCATGGCCTGGTACCGCGGTGGTGGCGGCGGCGGC
GGTGGAGGGGACGGACCCTGTTTGGCGAGGGTCACACTGTTCTCCCAACA
CCCACCCCGATTCGGCATGGATCATGGCTATCACATGGGACTCATCGGCG
CGTACAAGACGTTCAGCGCGGCAAGATTCGACAGGGACAGCAAAGTTTGG
CATTTCCCGGTAGAAATCTACAAGGAGGTCCTGGCCAAAGCGAGAGGCGT
GCCACAGGTGCGAGTCGAGGAGCTCCCCAAGGCACTGTCTGCCTTGCTAA
ACACTGGCATGGGCGGTGGCGGCAGCAGCGGCGGAGACAGCCATGTTGGT
GGGATGGAGGGTGCAGCAGGGGGCGCGAGGGAGGAGGAGCAGAAAGGCGT
GCCACAGGTGCGAGTCGAGGAGCTCCCCAAGGCACTGTCTGCCTTGCTAA
ACACTGGCATGGGCGGTGGCGGCAGCAGCGGCGGAGACAGCCATGTTGGT
GGGATGGAGGGTGCAGCAGGGGGCGCGAGGGAGGAGGAGCAGAA
back to top