mRNA_S-ischiensis_contig15.3457.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3457.1
Unique NamemRNA_S-ischiensis_contig15.3457.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.580e-24
Identity = 81/189 (42.86%), Postives = 103/189 (54.50%), Query Frame = 1 
Query:  259 ATAPDAVPWHPPDVAKL-VGVPATP-DDFVERDDLQESVIGAVLSADWRPRAPYTLYGMGGSGKSVLACHVVHSDRVRQQFRAGVFWLYAGAEADKNLVALLQQLCDAVSRTRGEPAPH-VSNVDDGVRHLSSTLARCKA------LVVVDDVWEAEVVDEMIKTGFHVLVTTRNEDIG--REGRTHVG 792
            A  P  +P   PD+A +  G    P   +VER  +QE   G     D  PRAPYT+ GMGG GKSVLA  VV    VR+ FR G+FW+  G  A  +L+ALLQ L   +   R + APH V +V DG+  +   LA   +      LVV+DDVWE EVVD  +  GF VL+TTR+  +     GR  VG
Sbjct:  192 AALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQEVADGLTSPED--PRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTD-APHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVG 377
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BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.740e-23
Identity = 69/167 (41.32%), Postives = 98/167 (58.68%), Query Frame = 3 
Query: 1647 DLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYSTQGVGSGGMYALLAFWRAVEDLGKDRGVAIDLVARYNSALDEIKATPTADVGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            D  GA+  A   V  SLL  VD G FRVHDL+LDF R    ++  +  V   RQ+ +L  L+VLR Y  +G    G Y+L+  WR + +L  ++ + ++    Y+++L E+    +      F+ V RLL+L+GKYD+AEPLY RS  I E+V GP+H DVA  LNN
Sbjct:   29 DNMGARNEADFFVSNSLLQEVD-GSFRVHDLLLDFARTRCEKEIIDEAVE--RQSQFLGRLAVLRGYEAEGESLEGFYSLIVLWRKLAELCGNKQLEVEA---YDASLGELGDDESTGAADAFSAVGRLLQLEGKYDDAEPLYERSQAIREKVLGPEHLDVAQSLNN 189
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BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.270e-23
Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 3 
Query: 1644 QDLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYST--QGVGSGGMYALLAFWRAVEDLGKDRGVAIDLVARYNSALDEIKATP-TADVGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            +D  G +  A  LV + LL  V    +RVHDLVL+FV+  I  + + +  +   QA YL  + VL+ Y     G G+ G++ L A WR+VE L  D  +    VA Y ++L E+++   T DV S +  V  L  ++GK+ EAEPLY RS  I E+V GP+HPDVAT LNN
Sbjct:  301 EDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELE---VASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNN 468
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BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.050e-23
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 3 
Query: 1644 QDLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYST--QGVGSGGMYALLAFWRAVEDLGKDRGVAIDLVARYNSALDEIKATPTAD-VGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            +D  G +  A  LV + LL  V  G +RVHDLVL+F +  I  + + ++ +   QA YL  L VL  Y     G G  G++ L A WR+VE L  D G+    VA Y ++L+E+++    + V + +  V  L  ++ KY EAEPLY RS  I E+V GP+HP VAT LNN
Sbjct:  543 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLE---VASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.500e-22
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 3 
Query: 1644 QDLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYST--QGVGSGGMYALLAFWRAVEDLGKDRGVAIDLVARYNSALDEIKATP-TADVGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            +D  G +  A  LV + LL  V  G +RVHDLVL+F +  I  + + ++ +   QA YL  L VL  Y     G G  G++ L A WR+VE L  D  +    VA Y+++L E+++   T  V   +  V  L  ++GKY EAEPLY RSL I E+V GP+HPDVAT L+N
Sbjct:  560 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELE---VASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDN 727
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BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.950e-22
Identity = 74/179 (41.34%), Postives = 100/179 (55.87%), Query Frame = 1 
Query:  253 RGATAPDAVPWHPPDVAKLVGVPATPDD--FVERDDLQESVIGAVLSADWRPRAPYTLYGMGGSGKSVLACHVVHSDRVRQQFRAGVFWLYAGAEADKNLVALLQQLCD---AVSRTRGEPAPHV-SNVDDGVRHLSSTLARCKA--LVVVDDVWEAEVVDEMIKTGFHVLVTTRNEDI 765
            +GAT    +P   PD+AK+        D  +VER  +++   G  ++    PRAPYT++GMGG GKSVLA  VV    VR+ FR G+FWL  G  A K L+ LLQ L     A         PHV  +++   RHL +  +   +  LVV+DDVWE EVVD ++  GF VLVTTR+  +
Sbjct:  122 KGATG-TVLPPSLPDMAKVPAEAVALSDSLYVERAAVRKVADG--ITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSV 297
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.470e-20
Identity = 72/168 (42.86%), Postives = 93/168 (55.36%), Query Frame = 1 
Query:  289 PPDVAKLVGVPA----TPDDFVERDDLQESVIGAVLSADWRPRAPYTLYGMGGSGKSVLACHVVHSDRVRQQFRAGVFWLYAGAEADKNLVALLQQLCDAVSRTRGEPAPH-VSNVDDGVRHLSSTLARCKA-------LVVVDDVWEAEVVDEMIKTGFHVLVTTRN 756
            PP +  +  VPA     P  +VER  +QE   G  L+A   PRAPYT+ G+GG GKSVLA  VV    VR+ FR G+ W+  G  A  +L+ LLQ L   +     + APH V  V D +  +   LA   A       LVV+DDVWE EVVD ++  GF VL+TTR+
Sbjct:  211 PPRLLDMAAVPAGALDLPRGYVERAAVQEVADG--LTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTD-APHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRD 375
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 5.090e-20
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 3 
Query: 1722 FRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYSTQGVGSGGMYALLAFWRAVEDL-GKDRGVAIDLVARYNSALDEIKATPTADVGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            FRVHDLVL F++ ++  D  N  ++  R A+YL  L VLR+Y   G  S G+YAL+A WR+VEDL G+ R  A+         ++ ++  P     + +    R+LEL GKY EA+PLY R++EI E   GPDHP +AT LNN
Sbjct:  516 FRVHDLVLLFLKPKLKADP-NRPIATSRFAEYLGQLKVLRRYLGDGETSDGVYALMALWRSVEDLVGESRVAAV--------YMNNLQGVPEH---APWRQAGRVLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNN 646
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.030e-19
Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 3 
Query: 1614 VSPMTCVR---QHQDLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGRDTDNMRVSVLRQADYLATLSVLRKYSTQ--GVGSGGMYALLAFWRAVEDLGKDRGVAIDLVARYNSALDEIKATP-TADVGSLFNDVARLLELKGKYDEAEPLYRRSLEIIERVYGPDHPDVATHLNN 2147
            V+P   +R   + QD+ G +  A  LV + LL  VD   +RVHDL+L ++R +I +D + ++ +   QA YL  L V+  Y  Q  G  + G++ L   WR +E L  D  +     A Y + L E+ +   TA+V +    VA L +++GK+ EAEPLY RS  I+E+V G +H DVA  LNN
Sbjct:  524 VAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLE---TASYRAILGELDSCEATAEVANCLEWVALLYDIQGKFAEAEPLYERSQTILEKVLGSEHSDVAKALNN 704
[Close]
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.430e-19
Identity = 63/169 (37.28%), Postives = 90/169 (53.25%), Query Frame = 1 
Query:  289 PPDVAKLVGVP----ATPDDFVERDDLQESVIGAVLSADWRPRAPYTLYGMGGSGKSVLACHVVHSDRVRQQFRAGVFWLYAGAEADKNLVALLQQLCDAVSR----TRGEPAPHVSNVDDGVRHLSSTLAR--CKALVVVDDVWEAEVVDEMIKTGFHVLVTTRNEDI 765
            PP +  L  +P      P  +V+R  + E V+  +        A + L GMGG GK+++A  VV  DRVR +F+ G+FW+  G E  K++  LL+ L   +SR    T        S  ++ +RHLSS  A    + LVV+D+VW  EVV+    TGFHVLVTTR   +
Sbjct:  226 PPSLGALAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGMGGGGKTLIASSVVRDDRVRARFKRGIFWVPVGREG-KDVALLLEHLAVELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAV 393
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS7_9PHAE4.580e-2442.86NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KIY6_9PHAE1.740e-2341.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJA6_9PHAE2.270e-2341.52NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI9.050e-2340.35NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G722_ECTSI2.500e-2241.52NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KU94_9PHAE6.950e-2241.34NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LGG5_ECTSI1.470e-2042.86NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G6W2_ECTSI5.090e-2044.06NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI1.030e-1937.50NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7FH19_ECTSI2.430e-1937.28NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:5881..9567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7G720
Preferred nameTUBGCP3
KEGG koko:K10407,ko:K16570
KEGG Pathwayko05132,map05132
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsCOG0457@1,KOG1840@2759,KOG2000@1,KOG2000@2759,KOG4658@1,KOG4658@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size2152
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3457.1prot_S-ischiensis_contig15.3457.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 5881..7171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.1172683-CDS-S-ischiensis_contig15:5880..59851622815744.1172683-CDS-S-ischiensis_contig15:5880..5985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 5881..5985 -
1695739888.1149876-CDS-S-ischiensis_contig15:5880..59851695739888.1149876-CDS-S-ischiensis_contig15:5880..5985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 5881..5985 -
1622815744.129671-CDS-S-ischiensis_contig15:6748..71711622815744.129671-CDS-S-ischiensis_contig15:6748..7171Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 6749..7171 -
1695739888.1342528-CDS-S-ischiensis_contig15:6748..71711695739888.1342528-CDS-S-ischiensis_contig15:6748..7171Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 6749..7171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.139832-UTR-S-ischiensis_contig15:7171..79181622815744.139832-UTR-S-ischiensis_contig15:7171..7918Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 7172..7918 -
1695739888.143306-UTR-S-ischiensis_contig15:7171..79181695739888.143306-UTR-S-ischiensis_contig15:7171..7918Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 7172..7918 -
1622815744.1512902-UTR-S-ischiensis_contig15:8125..87291622815744.1512902-UTR-S-ischiensis_contig15:8125..8729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 8126..8729 -
1695739888.15211-UTR-S-ischiensis_contig15:8125..87291695739888.15211-UTR-S-ischiensis_contig15:8125..8729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 8126..8729 -
1622815744.1616983-UTR-S-ischiensis_contig15:9057..92281622815744.1616983-UTR-S-ischiensis_contig15:9057..9228Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 9058..9228 -
1695739888.1611092-UTR-S-ischiensis_contig15:9057..92281695739888.1611092-UTR-S-ischiensis_contig15:9057..9228Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 9058..9228 -
1622815744.1751962-UTR-S-ischiensis_contig15:9467..95671622815744.1751962-UTR-S-ischiensis_contig15:9467..9567Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 9468..9567 -
1695739888.1715848-UTR-S-ischiensis_contig15:9467..95671695739888.1715848-UTR-S-ischiensis_contig15:9467..9567Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 9468..9567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3457.1

>prot_S-ischiensis_contig15.3457.1 ID=prot_S-ischiensis_contig15.3457.1|Name=mRNA_S-ischiensis_contig15.3457.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MTCVRQHQDLSGAQATAALLVQRSLLLVVDVGLFRVHDLVLDFVRAEIGR
DTDNMRVSVLRQADYLATLSVLRKYSTQGVGSGGMYALLAFWRAVEDLGK
DRGVAIDLVARYNSALDEIKATPTADVGSLFNDVARLLELKGKYDEAEPL
YRRSLEIIERVYGPDHPDVATHLNNL
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mRNA from alignment at S-ischiensis_contig15:5881..9567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3457.1 ID=mRNA_S-ischiensis_contig15.3457.1|Name=mRNA_S-ischiensis_contig15.3457.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3687bp|location=Sequence derived from alignment at S-ischiensis_contig15:5881..9567- (Schizocladia ischiensis KU_0333)
GAGGCTGCTGAGGAAGGTGGATGGTATCCGGGTTTGAAGGGATCCGCTTG
CGCTCTGCCACTATTCGGAGCACCGGCCCAGGGCACCCTGCGACATGGAG
GTAAGGCACGCGCTCGTTAGTCCTACGAACCGGGCTTGTGGACTGTCACA
GACTGCCTGGTACACTGGCGGACCTTTCGGTTGTGTACGCCAGTCCCGTT
GCGCGTCGAGCGCGCTGATCCATAGGCGGTGGAGACATGCGCATAGCGGG
GCGCAAGCTCGCGCCCTTGGCAGTTCAGTTGTCAGAGGACCGCGCAACAA
GTGCTCCGCGTGCTGCGTCCCCTCATTGGTCACGGGCAGGCGAACGACAC
GGAGATTCCTGAGGAGCTCCTGCATGGAGGCACGGAGGAGGAGATAGCAG
AATGGCGAAAGCTCCTGCAGGAGCCCACCGGCGGCTCGTCCAGCGCGGAT
GCTGCTAAGCTCCTGCTGGACGGTATGGTGGACATGGCTGACGTGGCGCT
ACTGCACCCGGTATGTGCCGCATTGAAGGGCCTACTTGGTGCTGAGCAAG
ACGCGGCATCCGCGCGGGAAGAACTGCGCGATTTGGTGGACCTGTGTGTA
CACATTGTGTTTGTGGTCACTCGGGCTGCTCGTGGAGCACCACTGAGCCT
CGAGAAGCGCCGGGCTCTGAGCGTCCTGGAACAGCACTTGAAAGAGATTG
GGAAGGTCGCCCGCCGCCTCGTGGCCACCAGCATGCTTGCACGTCTGAAG
CGATGGGCAACGGCCAAAAAGAACCGTGAACAACTTGAGCGACAGCGGCG
AAAGCTGCATGACCTCCTGCTCATCTTCGTGGCGGCAGATGCTGTGCCGT
GGCACCCGCCTGATGTGGCGAAGCTCGTCGGGGTCCCAGCAACCCCTGAT
GACTTTGTGGAGCGCGACGACCTCCAGGAGAGCGTGATTGGTGCGGTCTT
GAGTGCGGACTGGAGGCCCAGAGCCCCGTACACCCTCTACGGCATGGGTG
GCAGCGGCAAGTCTGTCCTGGCGTGCCATGTGGTCCACAGTGATCGTGTG
CGCCAGCAGTTCAGGGCTGGCGTCTTCTGGTTATACGCCGGGGCAGAGGC
GGACAAGAATCTTGTGGCCCTCCTGCAGCAGCTGTGTGATGCCGTTTCGC
GAACGCGGGGCGAACCCGCACCGCACGTGTCCAACGTGGATGACGGTGTC
AGGCATCTTAGCAGCACCCTGGCACGGTGCAAAGCACTCGTGGTTGTGGA
TGACGTGTGGGAGGCAGAGGTTGTGGATGAGATGATCAAGACTGGCTTCC
ATGTTCTGGTCACCACGCGAAATGAGGACATTGGGAGGGAGGGGCGCACG
CACGTGGGGAAATGACTGAGGAGGAGGCCTTGGCCATGCTCAAGCAAGCC
AGCCGTGCGCAAGCAGACCTGCCACGTACAGAGGCGATGGCGGCAAGTGA
CTGATACTTTAGCTTTTGCCGTGGGCGCTTGGGCCTGGGGCGACTTTGAC
TTGCCCTTGGTGGAAGGATGCTGTGTTTTTGGTATTTGAAAGACAATGGA
GTGAGCCACGATGTTGACACCAAGACGCGAGTGCCTTGTGAGGAGGCTGG
CGCTATTGGTCTAACCCACATGATTGCTTCGTGTGCATTGATGCCATAGG
TGGCCCGGGACTGCTGTTTTCTTCCTCTGGCGCTCAAGATGGTGGGCGCT
GTGCCGGGAGTAGCAAGCTCCCCACTGTCCCCCAAGGCATGGGAGGACGT
ACATGGCAAGCTGTCTCGCAATGCAAGCATCAGGGGACTGCCCAAGGAAG
GTGTGCCCAAAGGTGTTGTGCAGCTCAGCCATGATGCTCTGGGCGTGGCG
CACCAGAGAGCCTTCCGTGCGTTGGCCGTCCTGCCCAAGGGGGGGGTGGC
CTCAGACGCAATGCTGGCCTACCTCTGGGATGAAGAGGTATGTCTCGTGG
ATGTGTGTGTTCGCTCCCATCACAAATGCAAATCCATCCTGGCACACGAA
CATGATGTGCCCTAGTTGACGGCATGAACAGTTGTGACCGTATGTTGCAC
ACATCAACTGACCCTACAAATTGCATCTGAACTGCCATGCCCCGTTGTTC
GGCTTTAGATGACAGAATGCCTCTCTGTGCCATCTCAACCACAGTGTACA
GTGTCTATACGGACCACGGACATGTGGCACACACAGTTGTGCAATTTCTG
TGTGACATTGAGAACGATGAAAACATTGAAACCCTAGCATCAGCACCTGC
GCAAATCATGGCTTGGGGCAGTTGGCATGTGCATGCTCTAGTGACGCTCC
CTGGGTGCACTGCGGAGCGCATGGCTTTGGACATGTGGCCCCTGTGGCTG
CATTTTTCATTCAGGCCGGCAGTCTGAGCACAGTGACGTCTCTCCCATGA
CCTGTGTTCGGCAACATCAGGATCTCAGCGGTGCCCAGGCTACGGCTGCT
CTGCTGGTGCAGAGGTCCCTTCTACTCGTTGTGGATGTGGGGCTGTTTCG
GGTGCATGACCTGGTGTTGGATTTTGTGAGGGCAGAGATTGGGCGGGACA
CGGATAACATGCGGGTGTCTGTGCTGCGTCAAGCAGACTACCTGGCCACG
TTGTCGGTTCTCCGCAAGTACTCTACACAGGGCGTGGGGTCTGGAGGCAT
GTATGCACTCCTTGCATTTTGGCGTGCTGTTGAGGACCTGGGCAAAGACC
GTGGGGTGGCCATTGACCTGGTTGCACGGTACAACTCCGCCCTGGACGAG
ATAAAGGCTACACCGACAGCTGACGTGGGCAGCCTGTTCAACGATGTAGC
GCGGCTGCTGGAGCTCAAGGTGACAGCTGGATGTGAAGGCATTGCTCATA
CATACGGCTGATGTTTGATTGGATTTCCAAGTTCTAACAGTGAGTTCAGG
CATGCATGCAGGTGTGGGACATGAATTGTCCATGTTTGCCATTTACGTTT
GTAGGCGTACTGCAGATACCATCTGCAAGGTGTGCAACCCAGCACAACTG
GACATGGAGCTGGTGGCTTTTGGCATGCGCTGCTTGCCCTTGATGCGAAT
GGTTGGAAATAACACGGCATGAGAGAGCCCTGGCAATCAGGGCGGCTGCC
CGGATGTGGCCCAGTCGCTCAACAACCTGGCGGGGCAACCTGGCCTCGTT
GTTGAGCTCCACACACTGAACCTGCCCTTGTAACCCCGCTTGCGGCATTG
CAGGGGTTGCTGAGGGCCCAGGTGGGATGAAATGTTCTAAATTTGTCTTG
TGAGGAAATTTCTTTTGGCCGGCTTATTGAGTTTCCACATGAGAACGTGA
ACCTTGGCGGAGTTGCTGAGGGCCCAGGTGGGAGAAAATTGTTCTAAATT
GGCGTTGTTGGGCCACGCAGATGTGGCCCGTCCTTGGTCCTCACCCATTG
CCTCTCTCGATGTACACAGGCCAAGTACGAGGAGGCAGAGCCGCTCTACC
GCCGTTCTCTCAGGATTCGGGAGGCCACGCTGGGTCCTGACCACCCACAA
GTGGCCACAGGCCCTGTTGTTGAGCATAACAAGTGATCTGACTCCCTTTT
TCTTTTGCTGCCCTCTTCCCCATATGACATAGGGCAAGTACGATGAGGCG
GAGCCCTTGTACAGGCGGTCTCTTGAGATCATTGAGAGAGTGTACGGCCC
TGACCACCCGGATGTGGCTACACACCTCAACAACCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:5881..9567-

>mRNA_S-ischiensis_contig15.3457.1 ID=mRNA_S-ischiensis_contig15.3457.1|Name=mRNA_S-ischiensis_contig15.3457.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig15:5881..9567- (Schizocladia ischiensis KU_0333)
ATGACCTGTGTTCGGCAACATCAGGATCTCAGCGGTGCCCAGGCTACGGC
TGCTCTGCTGGTGCAGAGGTCCCTTCTACTCGTTGTGGATGTGGGGCTGT
TTCGGGTGCATGACCTGGTGTTGGATTTTGTGAGGGCAGAGATTGGGCGG
GACACGGATAACATGCGGGTGTCTGTGCTGCGTCAAGCAGACTACCTGGC
CACGTTGTCGGTTCTCCGCAAGTACTCTACACAGGGCGTGGGGTCTGGAG
GCATGTATGCACTCCTTGCATTTTGGCGTGCTGTTGAGGACCTGGGCAAA
GACCGTGGGGTGGCCATTGACCTGGTTGCACGGTACAACTCCGCCCTGGA
CGAGATAAAGGCTACACCGACAGCTGACGTGGGCAGCCTGTTCAACGATG
TAGCGCGGCTGCTGGAGCTCAAGATGACCTGTGTTCGGCAACATCAGGAT
CTCAGCGGTGCCCAGGCTACGGCTGCTCTGCTGGTGCAGAGGTCCCTTCT
ACTCGTTGTGGATGTGGGGCTGTTTCGGGTGCATGACCTGGTGTTGGATT
TTGTGAGGGCAGAGATTGGGCGGGACACGGATAACATGCGGGTGTCTGTG
CTGCGTCAAGCAGACTACCTGGCCACGTTGTCGGTTCTCCGCAAGTACTC
TACACAGGGCGTGGGGTCTGGAGGCATGTATGCACTCCTTGCATTTTGGC
GTGCTGTTGAGGACCTGGGCAAAGACCGTGGGGTGGCCATTGACCTGGTT
GCACGGTACAACTCCGCCCTGGACGAGATAAAGGCTACACCGACAGCTGA
CGTGGGCAGCCTGTTCAACGATGTAGCGCGGCTGCTGGAGCTCAAGGGCA
AGTACGATGAGGCGGAGCCCTTGTACAGGCGGTCTCTTGAGATCATTGAG
AGAGTGTACGGCCCTGACCACCCGGATGTGGCTACACACCTCAACAACCT
GGGCAAGTACGATGAGGCGGAGCCCTTGTACAGGCGGTCTCTTGAGATCA
TTGAGAGAGTGTACGGCCCTGACCACCCGGATGTGGCTACACACCTCAAC
AACCTG
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