mRNA_S-ischiensis_contig15.3455.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3455.1
Unique NamemRNA_S-ischiensis_contig15.3455.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 58.2 bits (139), Expect = 2.390e-9
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASL 120
            Q KYEEA PL QRALKI E VLGPDHP+VA  LN+LA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 58.2 bits (139), Expect = 4.080e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASL 120
            Q KYEEA PL QRALKI E VLGPDHP+VA  LN+LA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: A0A7S3JZ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ32_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.370e-6
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASLLQLQ 132
            QAKY EA PL +RAL+I EE LGP+HP VA  L  LA LL  Q
Sbjct:    2 QAKYNEAKPLYERALRIHEEKLGPNHPDVAMTLYKLAGLLNEQ 44
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: A0A512MFP3_9BACT (NACHT domain-containing protein n=1 Tax=Brevifollis gellanilyticus TaxID=748831 RepID=A0A512MFP3_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.010e-5
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 AKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASLLQ 126
            A++ EA PL +RALKI E   GPDHPTVA RLN+LA +LQ
Sbjct:  456 AQHAEAEPLQRRALKIDEASQGPDHPTVAIRLNNLAQVLQ 495
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: UPI000AACEA4F (CHAT domain-containing protein n=1 Tax=Moorena bouillonii TaxID=207920 RepID=UPI000AACEA4F)

HSP 1 Score: 50.1 bits (118), Expect = 4.890e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASL 120
            Q KY EA+PL +R L+I ++VLGPDHP VAA LN L  L
Sbjct:   93 QRKYSEAIPLWERELEIRQQVLGPDHPDVAANLNYLGVL 131
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: UPI0019409711 (FxSxx-COOH system tetratricopeptide repeat protein n=1 Tax=Actinoplanes nipponensis TaxID=135950 RepID=UPI0019409711)

HSP 1 Score: 49.7 bits (117), Expect = 6.580e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASLL 123
            Q ++  A+PL QRAL I+E  +GPDHPTVA RLN+LA  L
Sbjct:  448 QGQHHIALPLQQRALTITETAVGPDHPTVAIRLNNLAQTL 487
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BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Match: A0A0M1J674_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Achromatium sp. WMS1 TaxID=1604834 RepID=A0A0M1J674_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 7.370e-5
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 QAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASL 120
            Q KY EA+PL Q+ L I+E+VLGP+HP+ A  LN+LA L
Sbjct:   67 QGKYAEAIPLAQQDLAITEQVLGPNHPSTATSLNNLALL 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI0013D295282.390e-974.36tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI0013D05A064.080e-874.36tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A7S3JZ32_9STRA2.370e-662.79Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A512MFP3_9BACT1.010e-565.00NACHT domain-containing protein n=1 Tax=Brevifolli... [more]
UPI000AACEA4F4.890e-561.54CHAT domain-containing protein n=1 Tax=Moorena bou... [more]
UPI00194097116.580e-560.00FxSxx-COOH system tetratricopeptide repeat protein... [more]
A0A0M1J674_9GAMM7.370e-558.97Uncharacterized protein (Fragment) n=1 Tax=Achroma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:3499..5081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6765344-CDS-S-ischiensis_contig15:3498..36301622815731.6765344-CDS-S-ischiensis_contig15:3498..3630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 3499..3630 -
1695739881.9110246-CDS-S-ischiensis_contig15:3498..36301695739881.9110246-CDS-S-ischiensis_contig15:3498..3630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 3499..3630 -
1622815731.6928327-CDS-S-ischiensis_contig15:4949..50811622815731.6928327-CDS-S-ischiensis_contig15:4949..5081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 4950..5081 -
1695739881.9284866-CDS-S-ischiensis_contig15:4949..50811695739881.9284866-CDS-S-ischiensis_contig15:4949..5081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 4950..5081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3455.1prot_S-ischiensis_contig15.3455.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 3499..5081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3455.1

>prot_S-ischiensis_contig15.3455.1 ID=prot_S-ischiensis_contig15.3455.1|Name=mRNA_S-ischiensis_contig15.3455.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=88bp
MQAKYEEAMPLCQRALKISEEVLGPDHPTVAARLNSLASLLQLQGKYDEA
EPLYRRSLEIDERVYGPDHPHVATDLNNLVVQPHIVI*
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mRNA from alignment at S-ischiensis_contig15:3499..5081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3455.1 ID=mRNA_S-ischiensis_contig15.3455.1|Name=mRNA_S-ischiensis_contig15.3455.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1583bp|location=Sequence derived from alignment at S-ischiensis_contig15:3499..5081- (Schizocladia ischiensis KU_0333)
ATGCAGGCCAAGTACGAGGAGGCCATGCCCCTCTGTCAGAGGGCCCTGAA
GATCTCAGAGGAGGTGCTTGGCCCGGACCACCCAACCGTGGCCGCAAGGC
TCAACAGCCTGGCCTCGTTGTTGCAGCTGCAGGTGAAGAAATTGTTCTAA
ATTTGTCTTGTGAGGAAATTTCTTGTGGTGGGTTTATGGATTTTGTACGT
GAGAACAAGAAGTGCACTTTCTGGAATATTCCTGTGGCTGTGACGTTGAA
GCTCAACAACCTGGCGGGGTTGCTGAGGGCCCAGGTGGGATGAAATGTTC
TAAATTTGTCTTGTGGGGAAATTTGTTTTGGCAGGCATATTGAGTTTCCA
CATGAGAACGTGAACCTCACTTTCCTAGAATATTCCTGTGGCACTGCAAC
CCTGACAGGGCAAGCTGGACGAAGCCAAGCCCCTGTATGAGAGGGCTGTG
GGTATCTGGGAGACAGCACTGGGGCCTGAGCACCCACAAGTGGCCGCAGG
GCTCAACAACCTGGCCTCGTTGTTGAGCATGCAGGTGAGGTGCAAGTGAC
GGAGGCGTTGGCTCTGACTTGCGTCAATTGAGCCACCACCCCTGGAGTGT
CGAGCTGACACTGTCTGCCGCCACTGATTCTCCGGCAGGCCAAGTACGAT
GAGGCACTGCCCTTGTTTGAGAGAGCCCTGGCAATCCATGAGGGCGTCTT
GGGGCAGGACCACCCAGACACAATCACAAGCCAAGCATGGATGGCAGACT
TGTACAAGAAGCAAGGGCTGCTGGACAAGGCCCTACCTCTTTTGCAAGAG
GTGGCCCATGCACGAGAGCGTGTTCAGGGGCTAGACCACCCGGATGTGGC
GTCAGCTCTCAACAACCTGGCCTCGTTGTTGAGCATGCAGGTGAGGTGCA
AGTGACCGGAGGCGTTGGCTCTGACTTGCGTCAATTGAGCCACCACCCCT
GGAGTGTCGAGCTGACACTGTCTGCCGCCACTGATTCTCCGGCAGGCCAA
GTACGATGAGGCACAGCCCTTGTTTGAGAGAGCCCTGGCAATCAACGAGG
GCGTCTTGGGGCAGGACCACCCAGACACAATCACAAGCCAAGCATGGATG
GCAGACTTGTACGAGAAGCAGGGGCTGCTGGACAAGGCCCTACCTCTTTT
GCGAGAGGTGGCCCATGCACGAGAGCGTGTTCAGGGGCTAGACCACCCGC
ATGTGGCGTCAGCTCTCAACAACCTGGCCTTGTTGTTGACGCAGCAGGTG
AAGAAATTGTTCTAAATTTGTCTTGTGAGGAAATTTCTTGCGGTGGGTTT
ATGGATTTTGTACGTGAGAACAAGAAGTGCACTTTTCTGGAATATTCCTG
TGGCTGTGACGTTGAAGCTCAACAACCTGGCCTCGTTGTTGAGCATAACA
AGTGATCTGACTCCCTTTTTCTTTTGCTGCCCTCTTCCCCATATGACATA
GGGCAAGTATGATGAGGCGGAGCCCTTGTACAGGCGGTCTCTTGAGATCG
ATGAGAGAGTGTACGGCCCTGACCACCCGCATGTGGCTACAGACCTCAAC
AACCTCGTTGTTCAGCCCCACATTGTGATCTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:3499..5081-

>mRNA_S-ischiensis_contig15.3455.1 ID=mRNA_S-ischiensis_contig15.3455.1|Name=mRNA_S-ischiensis_contig15.3455.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig15:3499..5081- (Schizocladia ischiensis KU_0333)
ATGCAGGCCAAGTACGAGGAGGCCATGCCCCTCTGTCAGAGGGCCCTGAA
GATCTCAGAGGAGGTGCTTGGCCCGGACCACCCAACCGTGGCCGCAAGGC
TCAACAGCCTGGCCTCGTTGTTGCAGCTGCAGATGCAGGCCAAGTACGAG
GAGGCCATGCCCCTCTGTCAGAGGGCCCTGAAGATCTCAGAGGAGGTGCT
TGGCCCGGACCACCCAACCGTGGCCGCAAGGCTCAACAGCCTGGCCTCGT
TGTTGCAGCTGCAGGGCAAGTATGATGAGGCGGAGCCCTTGTACAGGCGG
TCTCTTGAGATCGATGAGAGAGTGTACGGCCCTGACCACCCGCATGTGGC
TACAGACCTCAACAACCTCGTTGTTCAGCCCCACATTGTGATCTGAGGCA
AGTATGATGAGGCGGAGCCCTTGTACAGGCGGTCTCTTGAGATCGATGAG
AGAGTGTACGGCCCTGACCACCCGCATGTGGCTACAGACCTCAACAACCT
CGTTGTTCAGCCCCACATTGTGATCTGA
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