mRNA_S-ischiensis_contig14.3375.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3375.1
Unique NamemRNA_S-ischiensis_contig14.3375.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2314515..2315581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.2781765-CDS-S-ischiensis_contig14:2314514..23146351622815703.2781765-CDS-S-ischiensis_contig14:2314514..2314635Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2314515..2314635 +
1695739862.6561754-CDS-S-ischiensis_contig14:2314514..23146351695739862.6561754-CDS-S-ischiensis_contig14:2314514..2314635Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2314515..2314635 +
1622815703.2905529-CDS-S-ischiensis_contig14:2315373..23155791622815703.2905529-CDS-S-ischiensis_contig14:2315373..2315579Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2315374..2315579 +
1695739862.6672056-CDS-S-ischiensis_contig14:2315373..23155791695739862.6672056-CDS-S-ischiensis_contig14:2315373..2315579Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2315374..2315579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3375.1prot_S-ischiensis_contig14.3375.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2314515..2315579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3375.1

>prot_S-ischiensis_contig14.3375.1 ID=prot_S-ischiensis_contig14.3375.1|Name=mRNA_S-ischiensis_contig14.3375.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
HLERSCEPLPRKIMAGATGDVCGALVAMMREEGTPLVWISGDIYIMDSDR
LVREILPRPQYAHLGTARDTLAAFSQMLTGLGFVQRVALHPRLWAGRPPA
VFSHAALAG
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mRNA from alignment at S-ischiensis_contig14:2314515..2315581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3375.1 ID=mRNA_S-ischiensis_contig14.3375.1|Name=mRNA_S-ischiensis_contig14.3375.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1067bp|location=Sequence derived from alignment at S-ischiensis_contig14:2314515..2315581+ (Schizocladia ischiensis KU_0333)
CATTTAGAAAGGAGCTGTGAGCCTCTCCCACGCAAGATCATGGCAGGAGC
CACGGGAGATGTTTGCGGTGCCCTGGTCGCCATGATGAGGGAGGAAGGAA
CCCCCTTGGTCTGGATCAGCGGTGGGTGGCAGAATTGACAGTATTTTGAG
CCCGGTAGACAAACCTGACCGGCCCTGCGTCTTGGTTGTGCTCTCATCAC
GTTGTCTTGACCAATGCGGACCCTTTTTGCGCGTATCTTCGAGGATAGCG
TTATTGCCAACGGGCACCTTCGTCCCTTGTGCCAGCTTCCATTCGACGCC
AAATTTAAGGCAGATTTTTTTTCCAGAATATTTTAAGGATATTCAACAAC
GCCTCCTGTGTCTTGTTGAGCGTCCAATGCGGGCAAGAGTCTATTATTGC
TGCGGCACACCGTACTTGGTCGAGCACATGGGCGCCCTTTTCCAGGGTTG
GCACTTGGAGGTCAATTAGGGCCTAATTAGCCTTCACTTTAGGTCTAATT
ACGCCCAATTAACTGTAATTAAGGGCCTAAAAGGGCACCACTTTGGGGTT
AAGTGCGAACCCTGCCCTTTTCAGCCGGTCGCTCCGTGCACTGTCTTGCC
AATTCTTGACTCAATCCATTGAGGGCACACCATACGTGTCCCTTTCCGGG
GGCTCCGGCTTCTCATGCATGGGTCGAGCCGCCTGCTGCGACTTGCAGTG
ATGGTTACGGTACTCCCACGGCGTGTGTGTGTGTGTGTGCGCGCGCGCGC
ACGCGCGCGCGTGCGTGCATGCGCTGCACTTGCCACCCCACCTTCCAAAT
CCGTTTCCAGCACAAGAACTCACCTTAACAACAATTACCCCCCCTCCCCC
CCCCGCCAGGAGACATATACATCATGGACTCCGACCGGCTCGTCCGCGAA
ATCCTCCCCAGGCCCCAATACGCCCACCTCGGCACAGCCCGGGACACCCT
CGCAGCCTTCTCCCAAATGCTCACCGGGCTCGGCTTCGTCCAGCGTGTAG
CCCTGCACCCCCGCCTCTGGGCCGGCCGCCCACCTGCAGTCTTCTCGCAC
GCCGCCCTCGCCGGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2314515..2315581+

>mRNA_S-ischiensis_contig14.3375.1 ID=mRNA_S-ischiensis_contig14.3375.1|Name=mRNA_S-ischiensis_contig14.3375.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig14:2314515..2315581+ (Schizocladia ischiensis KU_0333)
CATTTAGAAAGGAGCTGTGAGCCTCTCCCACGCAAGATCATGGCAGGAGC
CACGGGAGATGTTTGCGGTGCCCTGGTCGCCATGATGAGGGAGGAAGGAA
CCCCCTTGGTCTGGATCAGCGCATTTAGAAAGGAGCTGTGAGCCTCTCCC
ACGCAAGATCATGGCAGGAGCCACGGGAGATGTTTGCGGTGCCCTGGTCG
CCATGATGAGGGAGGAAGGAACCCCCTTGGTCTGGATCAGCGGAGACATA
TACATCATGGACTCCGACCGGCTCGTCCGCGAAATCCTCCCCAGGCCCCA
ATACGCCCACCTCGGCACAGCCCGGGACACCCTCGCAGCCTTCTCCCAAA
TGCTCACCGGGCTCGGCTTCGTCCAGCGTGTAGCCCTGCACCCCCGCCTC
TGGGCCGGCCGCCCACCTGCAGTCTTCTCGCACGCCGCCCTCGCCGGGGA
GACATATACATCATGGACTCCGACCGGCTCGTCCGCGAAATCCTCCCCAG
GCCCCAATACGCCCACCTCGGCACAGCCCGGGACACCCTCGCAGCCTTCT
CCCAAATGCTCACCGGGCTCGGCTTCGTCCAGCGTGTAGCCCTGCACCCC
CGCCTCTGGGCCGGCCGCCCACCTGCAGTCTTCTCGCACGCCGCCCTCGC
CGGG
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