mRNA_S-ischiensis_contig14.3366.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3366.1
Unique NamemRNA_S-ischiensis_contig14.3366.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8C3SEU2_CHESE (ABC transporter domain-containing protein n=2 Tax=Durocryptodira TaxID=1579337 RepID=A0A8C3SEU2_CHESE)

HSP 1 Score: 125 bits (314), Expect = 4.220e-33
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP +G VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D V++RSV   +LR RLA + Q+P LF GT+RENLDPLG H
Sbjct:   48 WPSQGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVNSRSVGLESLRSRLAIIPQDPFLFSGTIRENLDPLGRH 155
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8B9UPF4_9AVES (ABC transporter domain-containing protein n=2 Tax=Anatidae TaxID=8830 RepID=A0A8B9UPF4_9AVES)

HSP 1 Score: 122 bits (307), Expect = 3.130e-32
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFE-GRVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLG 318
            WP RG VE + VV+ YRAGLP AL GVSF V PGEKV +VGRTGSGK+++  ALFR+   + GR+L+DGVD+RS    A R RLA + Q+P LF G++RENLDP G
Sbjct:   30 WPSRGLVEFQHVVLAYRAGLPNALDGVSFTVYPGEKVGVVGRTGSGKSTLFLALFRMLELKAGRILLDGVDSRSRLSSACRSRLAIIPQDPFLFSGSIRENLDPQG 135
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8C0J445_CHEAB (Uncharacterized protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0J445_CHEAB)

HSP 1 Score: 128 bits (321), Expect = 3.880e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPF-EGRVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP  L GV+F + PGEKV +VGRTGSGK+++  ALFR+    EGR+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1249 WPSRGHVEFQQVVLTYRPGLPNVLDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELREGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1356
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A674I3B5_TERCA (Uncharacterized protein n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674I3B5_TERCA)

HSP 1 Score: 127 bits (320), Expect = 5.300e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1229 WPSRGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1336
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8C3IML1_CHRPI (Uncharacterized protein n=1 Tax=Chrysemys picta bellii TaxID=8478 RepID=A0A8C3IML1_CHRPI)

HSP 1 Score: 127 bits (320), Expect = 5.300e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1232 WPSRGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1339
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8C3ILG1_CHRPI (Uncharacterized protein n=1 Tax=Chrysemys picta bellii TaxID=8478 RepID=A0A8C3ILG1_CHRPI)

HSP 1 Score: 127 bits (320), Expect = 5.300e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1229 WPSRGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1336
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8C3PE91_CHRPI (Uncharacterized protein n=1 Tax=Chrysemys picta bellii TaxID=8478 RepID=A0A8C3PE91_CHRPI)

HSP 1 Score: 127 bits (320), Expect = 5.300e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1239 WPSRGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1346
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A452GJN2_9SAUR (Uncharacterized protein n=15 Tax=Testudinoidea TaxID=8486 RepID=A0A452GJN2_9SAUR)

HSP 1 Score: 127 bits (320), Expect = 5.310e-32
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPFEG-RVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WP RG VE + VV+ YR GLP AL GV+F + PGEKV +VGRTGSGK+++  ALFR+    G R+L+D VD+RSV   +LR +LA + Q+P LF GT+RENLDPLG H
Sbjct: 1300 WPSRGHVEFQQVVLTYRPGLPNALDGVTFTIYPGEKVGIVGRTGSGKSTIFLALFRMVELRGGRILLDNVDSRSVGLESLRSKLAIIPQDPFLFSGTIRENLDPLGRH 1407
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A8J6A1D4_GALPY (Multidrug resistance-associated protein 7 n=7 Tax=Talpidae TaxID=9373 RepID=A0A8J6A1D4_GALPY)

HSP 1 Score: 127 bits (319), Expect = 7.230e-32
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLY-PFEGRVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            W  +G VE + VV+ YRAGLP AL GV+F V PGEK+ +VGRTGSGK+S+L  LFRL  P  GRVL+DGVDTR +    LR +LA + QEP LF GT+RENLDP G H
Sbjct: 1239 WLTQGSVEFQDVVLVYRAGLPNALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTRQLELAELRSQLAIIPQEPFLFSGTVRENLDPWGRH 1346
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BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Match: A0A3Q3IF34_MONAL (ATP binding cassette subfamily C member 10 n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3IF34_MONAL)

HSP 1 Score: 122 bits (305), Expect = 9.060e-32
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    4 WPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTSVLRALFRLYPF-EGRVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRENLDPLGHH 324
            WPE+G VE  GVV+ YR GLP AL GVS  V PGEKV +VGRTGSGK+++  ALFR+    +G++L+DG+D  +V    LR RLA + Q+P LF GT+REN+DP G H
Sbjct:   31 WPEQGWVEFRGVVLAYREGLPNALDGVSLVVRPGEKVGIVGRTGSGKSTLFLALFRMVELSQGQILLDGLDISTVGLAQLRSRLAIIPQDPFLFSGTIRENVDPCGRH 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C3SEU2_CHESE4.220e-3357.41ABC transporter domain-containing protein n=2 Tax=... [more]
A0A8B9UPF4_9AVES3.130e-3260.38ABC transporter domain-containing protein n=2 Tax=... [more]
A0A8C0J445_CHEAB3.880e-3258.33Uncharacterized protein n=1 Tax=Chelonoidis abingd... [more]
A0A674I3B5_TERCA5.300e-3258.33Uncharacterized protein n=1 Tax=Terrapene carolina... [more]
A0A8C3IML1_CHRPI5.300e-3258.33Uncharacterized protein n=1 Tax=Chrysemys picta be... [more]
A0A8C3ILG1_CHRPI5.300e-3258.33Uncharacterized protein n=1 Tax=Chrysemys picta be... [more]
A0A8C3PE91_CHRPI5.300e-3258.33Uncharacterized protein n=1 Tax=Chrysemys picta be... [more]
A0A452GJN2_9SAUR5.310e-3258.33Uncharacterized protein n=15 Tax=Testudinoidea Tax... [more]
A0A8J6A1D4_GALPY7.230e-3261.11Multidrug resistance-associated protein 7 n=7 Tax=... [more]
A0A3Q3IF34_MONAL9.060e-3256.48ATP binding cassette subfamily C member 10 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2225658..2226979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score129.4
Seed ortholog evalue1e-27
Seed eggNOG ortholog8479.XP_005296338.1
Preferred nameABCC10
KEGG koko:K05674
KEGG TC3.A.1.208
KEGG Pathwayko02010,map02010
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042623,GO:0042626,GO:0043225,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0099133
EggNOG free text desc.ABC transporter transmembrane region
EggNOG OGs38GYV@33154,3BBUA@33208,3CW5R@33213,482EB@7711,48ZT1@7742,4C92Z@8459,COG1132@1,KOG0054@2759
COG Functional cat.Q
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size328
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3366.1prot_S-ischiensis_contig14.3366.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2225658..2226977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.1131392-CDS-S-ischiensis_contig14:2225657..22257681622815724.1131392-CDS-S-ischiensis_contig14:2225657..2225768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2225658..2225768 +
1695739876.6628904-CDS-S-ischiensis_contig14:2225657..22257681695739876.6628904-CDS-S-ischiensis_contig14:2225657..2225768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2225658..2225768 +
1622815724.1240833-CDS-S-ischiensis_contig14:2226057..22261441622815724.1240833-CDS-S-ischiensis_contig14:2226057..2226144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2226058..2226144 +
1695739876.67301-CDS-S-ischiensis_contig14:2226057..22261441695739876.67301-CDS-S-ischiensis_contig14:2226057..2226144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2226058..2226144 +
1622815724.136749-CDS-S-ischiensis_contig14:2226851..22269771622815724.136749-CDS-S-ischiensis_contig14:2226851..2226977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2226852..2226977 +
1695739876.68109-CDS-S-ischiensis_contig14:2226851..22269771695739876.68109-CDS-S-ischiensis_contig14:2226851..2226977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2226852..2226977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3366.1

>prot_S-ischiensis_contig14.3366.1 ID=prot_S-ischiensis_contig14.3366.1|Name=mRNA_S-ischiensis_contig14.3366.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
QWPERGGVEVEGVVMRYRAGLPPALRGVSFHVAPGEKVALVGRTGSGKTS
VLRALFRLYPFEGRVLIDGVDTRSVRRRALRRRLAAVTQEPLLFQGTLRE
NLDPLGHH
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mRNA from alignment at S-ischiensis_contig14:2225658..2226979+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3366.1 ID=mRNA_S-ischiensis_contig14.3366.1|Name=mRNA_S-ischiensis_contig14.3366.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1322bp|location=Sequence derived from alignment at S-ischiensis_contig14:2225658..2226979+ (Schizocladia ischiensis KU_0333)
CAGTGGCCGGAGCGAGGAGGTGTGGAGGTGGAGGGGGTGGTGATGCGGTA
CAGGGCGGGCCTGCCGCCTGCACTTCGGGGGGTGAGCTTTCATGTGGCGC
CCGGAGAGAAGGTGTGTTTGTGTGTGTGATGTGATGTGATGTGATGTGCA
CCTAAAAATGCTGTAGTTTGACATCACATCACATCTCATTGTGTCATCGG
TGAGTGTGTGTTTATGTGTGTTTGTGTGTTTGTGTGTGTGTGAGCTGTGC
GGAATTCGTTGTAGGGTCCCTCGCTACAATTTATATGAATCGCTGTCGAT
ACGTGGACAGATCAATGCTGTCGATACATGGACCGATTGGCCGCTAGAGT
AGAGAGAGCTGACGTCTACTGTACTGTTTGTCTGCTGCACTGTACTGTAG
GTGGCGCTGGTGGGGAGGACGGGCTCCGGCAAGACCTCGGTGCTGCGCGC
GCTATTCCGCCTATACCCCTTCGAGGGCAGGGTGCTGGTGAGTGAGGGAG
GAGGGAGGGAGGGTGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGACGGAGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GCGGGAGGGGGGGAGGGGGGGGGGGGGGGGAGGGAGGGAGGGAAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAACGGAGGGAGGGAGGGAAGGGATG
GACGGAGGGAGGGAGGGGGGGAGGGAGGGAGAGAGGGAGGAAGGGAGGGA
GGGGAGGGAGAGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGGGAGGG
GGCGGGAGGAGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGGG
GGGGGAGGGGGGGGGGGATGGGGTCGAGGGAGTAAGGGGGCGGGCGTGGG
AGTGTGGGAGTGTGTGTGAGGGCTTGGGAAAGCGAAGAGGAACAGAGGGA
GGGAGGTAGGGAGGGAGGAGGGTTTGGACTTGAAATTTGAAGTGCCCCTT
CGACAGAGAGGCTGCCCCATCTTTGGGATGCGTGTGTGCTGCAGTCAATG
CCAAGCTGCCCCCGTGCACGGCCATGATGTGATGTGTACTCCAATGTGCG
CTCTAGTGTGCTGCAGTTTGACGCCACACCACACCACACCGCTCTCCCCT
CCTCCCCCCCCTCCCCCCCCCTGCCCTCCCCCCGGGGCGGACAGATTGAC
GGGGTAGACACGCGCTCCGTGCGGCGGCGTGCCCTACGCCGCCGCCTTGC
CGCCGTCACGCAGGAACCCCTCCTCTTCCAAGGCACCCTAAGAGAGAACC
TGGACCCCCTCGGCCACCACTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2225658..2226979+

>mRNA_S-ischiensis_contig14.3366.1 ID=mRNA_S-ischiensis_contig14.3366.1|Name=mRNA_S-ischiensis_contig14.3366.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig14:2225658..2226979+ (Schizocladia ischiensis KU_0333)
CAGTGGCCGGAGCGAGGAGGTGTGGAGGTGGAGGGGGTGGTGATGCGGTA
CAGGGCGGGCCTGCCGCCTGCACTTCGGGGGGTGAGCTTTCATGTGGCGC
CCGGAGAGAAGCAGTGGCCGGAGCGAGGAGGTGTGGAGGTGGAGGGGGTG
GTGATGCGGTACAGGGCGGGCCTGCCGCCTGCACTTCGGGGGGTGAGCTT
TCATGTGGCGCCCGGAGAGAAGGTGGCGCTGGTGGGGAGGACGGGCTCCG
GCAAGACCTCGGTGCTGCGCGCGCTATTCCGCCTATACCCCTTCGAGGGC
AGGGTGCTGGTGGCGCTGGTGGGGAGGACGGGCTCCGGCAAGACCTCGGT
GCTGCGCGCGCTATTCCGCCTATACCCCTTCGAGGGCAGGGTGCTGATTG
ACGGGGTAGACACGCGCTCCGTGCGGCGGCGTGCCCTACGCCGCCGCCTT
GCCGCCGTCACGCAGGAACCCCTCCTCTTCCAAGGCACCCTAAGAGAGAA
CCTGGACCCCCTCGGCCACCACATTGACGGGGTAGACACGCGCTCCGTGC
GGCGGCGTGCCCTACGCCGCCGCCTTGCCGCCGTCACGCAGGAACCCCTC
CTCTTCCAAGGCACCCTAAGAGAGAACCTGGACCCCCTCGGCCACCAC
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