mRNA_S-ischiensis_contig14.3361.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3361.1
Unique NamemRNA_S-ischiensis_contig14.3361.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2201955..2202472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.2760746-UTR-S-ischiensis_contig14:2201954..22021391622815707.2760746-UTR-S-ischiensis_contig14:2201954..2202139Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2201955..2202139 +
1695739864.6405365-UTR-S-ischiensis_contig14:2201954..22021391695739864.6405365-UTR-S-ischiensis_contig14:2201954..2202139Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2201955..2202139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.290594-CDS-S-ischiensis_contig14:2202139..22024721622815707.290594-CDS-S-ischiensis_contig14:2202139..2202472Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2202140..2202472 +
1695739864.6512566-CDS-S-ischiensis_contig14:2202139..22024721695739864.6512566-CDS-S-ischiensis_contig14:2202139..2202472Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2202140..2202472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3361.1prot_S-ischiensis_contig14.3361.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2202140..2202472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3361.1

>prot_S-ischiensis_contig14.3361.1 ID=prot_S-ischiensis_contig14.3361.1|Name=mRNA_S-ischiensis_contig14.3361.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp
MSSPLLLLLSLKGNFIVPWLPTLPNLAGCSTTSPKPPRMCEPSFAKSSGR
TVRVDRSQRPKPTALQRGGGRPTNLPPAARPALPWTCRYPSRAHHDASAQ
VLPPDPKQRQQ
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mRNA from alignment at S-ischiensis_contig14:2201955..2202472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3361.1 ID=mRNA_S-ischiensis_contig14.3361.1|Name=mRNA_S-ischiensis_contig14.3361.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=518bp|location=Sequence derived from alignment at S-ischiensis_contig14:2201955..2202472+ (Schizocladia ischiensis KU_0333)
ACTCGGCGACCCCCTCCAGCGGGGCGGAAGGGGGCAGCCCCGACGGTGGT
TGTGGCGGGGTGGGGATGACCGCGGCATACGGATGAGTCGCCCCCGAGGA
TGCCTGGTCGCTGCTCGCGCCCTCTGACACGTTCGGCTTTTCCAAGTCCC
CGTCTCCGGCTCCCTCGGCGGCGGGGTCAACGGGCATGTCCTCGCCTCTC
TTGCTCTTGCTGAGTTTGAAAGGGAACTTCATTGTCCCGTGGCTCCCCAC
CCTCCCAAACCTTGCTGGCTGCTCCACCACCAGTCCCAAGCCTCCTAGGA
TGTGCGAGCCGTCCTTTGCAAAAAGCTCCGGGAGAACGGTGCGGGTTGAT
AGGTCGCAGAGGCCAAAACCCACCGCGCTTCAGCGGGGCGGGGGAAGGCC
AACAAACCTGCCCCCTGCCGCACGCCCTGCCCTGCCGTGGACGTGCAGAT
ATCCCTCACGGGCTCATCATGACGCCTCTGCCCAAGTCCTCCCTCCCGAC
CCGAAGCAACGGCAGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2201955..2202472+

>mRNA_S-ischiensis_contig14.3361.1 ID=mRNA_S-ischiensis_contig14.3361.1|Name=mRNA_S-ischiensis_contig14.3361.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig14:2201955..2202472+ (Schizocladia ischiensis KU_0333)
ATGTCCTCGCCTCTCTTGCTCTTGCTGAGTTTGAAAGGGAACTTCATTGT
CCCGTGGCTCCCCACCCTCCCAAACCTTGCTGGCTGCTCCACCACCAGTC
CCAAGCCTCCTAGGATGTGCGAGCCGTCCTTTGCAAAAAGCTCCGGGAGA
ACGGTGCGGGTTGATAGGTCGCAGAGGCCAAAACCCACCGCGCTTCAGCG
GGGCGGGGGAAGGCCAACAAACCTGCCCCCTGCCGCACGCCCTGCCCTGC
CGTGGACGTGCAGATATCCCTCACGGGCTCATCATGACGCCTCTGCCCAA
GTCCTCCCTCCCGACCCGAAGCAACGGCAGCAGATGTCCTCGCCTCTCTT
GCTCTTGCTGAGTTTGAAAGGGAACTTCATTGTCCCGTGGCTCCCCACCC
TCCCAAACCTTGCTGGCTGCTCCACCACCAGTCCCAAGCCTCCTAGGATG
TGCGAGCCGTCCTTTGCAAAAAGCTCCGGGAGAACGGTGCGGGTTGATAG
GTCGCAGAGGCCAAAACCCACCGCGCTTCAGCGGGGCGGGGGAAGGCCAA
CAAACCTGCCCCCTGCCGCACGCCCTGCCCTGCCGTGGACGTGCAGATAT
CCCTCACGGGCTCATCATGACGCCTCTGCCCAAGTCCTCCCTCCCGACCC
GAAGCAACGGCAGCAG
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