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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 421 |
| Cds size | 396 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815702.9348779-UTR-S-ischiensis_contig14:2045660..2045683 | 1622815702.9348779-UTR-S-ischiensis_contig14:2045660..2045683 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig14 2045661..2045683 + |
| 1695739862.4790626-UTR-S-ischiensis_contig14:2045660..2045683 | 1695739862.4790626-UTR-S-ischiensis_contig14:2045660..2045683 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig14 2045661..2045683 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815702.9475935-CDS-S-ischiensis_contig14:2045683..2045701 | 1622815702.9475935-CDS-S-ischiensis_contig14:2045683..2045701 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2045684..2045701 + |
| 1695739862.4878638-CDS-S-ischiensis_contig14:2045683..2045701 | 1695739862.4878638-CDS-S-ischiensis_contig14:2045683..2045701 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2045684..2045701 + |
| 1622815702.9592528-CDS-S-ischiensis_contig14:2047169..2047276 | 1622815702.9592528-CDS-S-ischiensis_contig14:2047169..2047276 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2047170..2047276 + |
| 1695739862.4964263-CDS-S-ischiensis_contig14:2047169..2047276 | 1695739862.4964263-CDS-S-ischiensis_contig14:2047169..2047276 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2047170..2047276 + |
| 1622815702.969078-CDS-S-ischiensis_contig14:2047848..2048119 | 1622815702.969078-CDS-S-ischiensis_contig14:2047848..2048119 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2047849..2048119 + |
| 1695739862.5049272-CDS-S-ischiensis_contig14:2047848..2048119 | 1695739862.5049272-CDS-S-ischiensis_contig14:2047848..2048119 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig14 2047849..2048119 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig14.3343.1 >prot_S-ischiensis_contig14.3343.1 ID=prot_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
MVRCIEELERDLGRTTCALALTLLCKVPARLHRSRLSEAFCRWRELPRGP
PPSTDTSTQTPDGAVQTSSAAHPPPSPGPPLPPPPPPPQHRLPPPPPYAA
CVGAWPHGCSGGGNGGGGGGGGGADTRACITG back to topmRNA from alignment at S-ischiensis_contig14:2045661..2048119+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig14.3343.1 ID=mRNA_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2459bp|location=Sequence derived from alignment at S-ischiensis_contig14:2045661..2048119+ (Schizocladia ischiensis KU_0333)
GGAGGCCCGTGGAGGGCGCCGCGATGGTTCGTTGCATAGAGGTGAGGCCT
GGGCTGGGCTGGAGGCGATCGAATCAGCTGCTTTGGAGCGCCAAGTACTT
GTACGAGTACTCGAGTACATGTAGTACGTGCTTGCTTGGCACATCGAAGT
ATTTTGCATTGTTGACAGGAACAACACAGGGTGAGGTGCGAGCCACGTCG
CTGAAGACCTCAGCAGCGGCCCTTCCTTATAGCTCGCCAGGGGAAATTTG
CCGTAGTACAGTGGTACAGTGGTACTGAACTGCTAAGGAAGGGCCACCGT
TGAGGTCTTCAGTGAGGTGGCCTGCACCCCAGCCCGTGTTTTTCCTCGTT
CTCCTGCTGAGTCATTGGCCCGTTTCCATCCCCGCCCCGCCCCCCTAACA
AGTACAGTGGTACTGAAATGCTAAGGGAGGGCCACTGTTGAGGTCTTTAG
CGACGGCCTGCACCCTGCCCTGTGTTTTTTCCCTCCGTCTCCTGCTGTGT
TGTCATTGGCCCGTTTCCTCCCCACCCCGCTCCCAAGTGGGACCTTGAGA
GCTGTGCCGAGGTGTACTGTACCGTACTGTACCGTACTGTACCGTACCGT
ACTGTACCGTACTAAGCTGTGCTGTGCTGTGCTCGTCTCGACACACCTCA
TAGAGAGCTGTGCTGAGGTGTATTGTACCTTGCTGTATCGTGCTGTGCTG
AGGTGTACTGTACCGTACTGTGCTGAGGTGTACTATATCATGCTGTACCG
TACTGAACTGAGGTGTACTGTACCGTACTGTACCATGCTGTGCTGAGGTG
TACTGTACCATACTCTACCGTACTGTGCTGAGATGTACTGTACCGTACTG
TACCGTACTGTGCTGAGGTGTACTGTACCGTACTGTGCTGTGCCGTGCTT
GTCTCGAGACGCCTTGTTCTCTCTCTACCTCCCCGTCTCCTGCTGTGTTG
TCATTGGCCTACTTTCTCCCTCCCCACCCCCCGCCCCCGAGGAGCAGGAG
CTGGAGAGGGACCTCGGCAGGACCACTTATTTATCGACAGAACTGATCTA
TATATGTATCGATAGTCGATACTCGATAGTTTGCCCACACTAAATCCAAG
TAGTTGGCAACGCCACCCACAAAAGCAGTGGAGCCCGATAACTATCTACT
GATCGATATTCCGTCACTGCCGAGCAGGAGCTCGAGAGGGACCTCAGCAG
GACCACCTGCGCGCTAGCCCTGACGCTCTTGTGCTATCTACTTGGATTTA
GTGTGGGTCAAACTATCGAATATCGACTATCGATAGATATATAGATCATC
ACCCCGCCCCTTTCCTTCTTTATTTTTGTTTTCTTTTGTTCTGCAAGGGG
AAGAAGGGCTTCGATGAGTCCTATTTTGGGACGAGCCTTTTGGCACGGGG
CCTGGAACTCGATGCTTATCTAACACTCAAAATAGATCAGTATTGTGGAA
TTGGTTGATTTGCGTAGCTGTTCCATCACTGGTTTCCTCCCCACCCCGCC
CCTGAGCAGGAGCTCGAGAGGGACCTCGGCAGGACCACCTGCGCGCTGGC
CCTGACGCTCTTGTGCAAGGTGCCGGCACGCCTGCACCGCTCCAGGCTCT
CCGAGGCATTCTGCAGGTGTGTAGTGCGCTGTGCTGTACTCACGAGTCAG
GGACACGCTCAAGTACTCCTTGACGTGATGTGATGTCAACCTACTGGATG
CTAGATCAAACATCAAATCACATCACATCGCACAAGTGTTACAGTGTACA
AATGAACTACGGAACAGTACACTACACTACACTACAGTACGTACCCTATT
CCGGCACGCGCGCGTGTGTGCGTGTGTGTGCGAGGGGTGTGTGCGCGTGC
GTGTGAAACACTTTTGAGTAGACTTCTACAGTAGAGCTCTAAGCTGTGCA
GTACGGTAGTTTTTCCAATCATGAAGATAAACTACGGTAGTTCTGTAGAG
GGCGTCGATGCACTAAGTTATAAACCTACACTCCCAAGCGCTCAAGCCCC
CTTCGCAAGGACTCATTTTCCTCCACGCCATCCGACTCATCAGGGCTGAC
TCAGGAATCCCACCCCTCCCCGCGCACCGGCCACCCCTCGACATGCATGT
GCGTGTGTGTGCGCTCGTTGTTGTGCGTTTACGTTTGTGCGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTACGCACGCCCTCGCAGGTGGAGAGAGCT
GCCGCGAGGACCGCCCCCGTCCACGGACACCTCCACGCAGACGCCTGACG
GGGCAGTGCAAACCTCGTCTGCGGCGCATCCGCCCCCTTCTCCCGGGCCG
CCGCTGCCGCCACCCCCACCCCCACCCCAACACCGGCTTCCTCCTCCTCC
TCCATACGCCGCCTGTGTTGGGGCTTGGCCGCACGGCTGCAGCGGAGGCG
GCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGACACCCGTGCCTGC
ATCACTGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig14:2045661..2048119+ >mRNA_S-ischiensis_contig14.3343.1 ID=mRNA_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig14:2045661..2048119+ (Schizocladia ischiensis KU_0333)
ATGGTTCGTTGCATAGAGATGGTTCGTTGCATAGAGGAGCTCGAGAGGGA
CCTCGGCAGGACCACCTGCGCGCTGGCCCTGACGCTCTTGTGCAAGGTGC
CGGCACGCCTGCACCGCTCCAGGCTCTCCGAGGCATTCTGCAGGAGCTCG
AGAGGGACCTCGGCAGGACCACCTGCGCGCTGGCCCTGACGCTCTTGTGC
AAGGTGCCGGCACGCCTGCACCGCTCCAGGCTCTCCGAGGCATTCTGCAG
GTGGAGAGAGCTGCCGCGAGGACCGCCCCCGTCCACGGACACCTCCACGC
AGACGCCTGACGGGGCAGTGCAAACCTCGTCTGCGGCGCATCCGCCCCCT
TCTCCCGGGCCGCCGCTGCCGCCACCCCCACCCCCACCCCAACACCGGCT
TCCTCCTCCTCCTCCATACGCCGCCTGTGTTGGGGCTTGGCCGCACGGCT
GCAGCGGAGGCGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGAC
ACCCGTGCCTGCATCACTGGCGTGGAGAGAGCTGCCGCGAGGACCGCCCC
CGTCCACGGACACCTCCACGCAGACGCCTGACGGGGCAGTGCAAACCTCG
TCTGCGGCGCATCCGCCCCCTTCTCCCGGGCCGCCGCTGCCGCCACCCCC
ACCCCCACCCCAACACCGGCTTCCTCCTCCTCCTCCATACGCCGCCTGTG
TTGGGGCTTGGCCGCACGGCTGCAGCGGAGGCGGCAACGGCGGCGGCGGC
GGCGGCGGCGGCGGCGCTGACACCCGTGCCTGCATCACTGGC back to top
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