mRNA_S-ischiensis_contig14.3328.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3328.1
Unique NamemRNA_S-ischiensis_contig14.3328.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:1875990..1876994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1006
Cds size564
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.8132899-CDS-S-ischiensis_contig14:1875989..18765531622815706.8132899-CDS-S-ischiensis_contig14:1875989..1876553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1875990..1876553 +
1695739864.4285028-CDS-S-ischiensis_contig14:1875989..18765531695739864.4285028-CDS-S-ischiensis_contig14:1875989..1876553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1875990..1876553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.8249886-UTR-S-ischiensis_contig14:1876553..18769941622815706.8249886-UTR-S-ischiensis_contig14:1876553..1876994Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1876554..1876994 +
1695739864.438613-UTR-S-ischiensis_contig14:1876553..18769941695739864.438613-UTR-S-ischiensis_contig14:1876553..1876994Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1876554..1876994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3328.1prot_S-ischiensis_contig14.3328.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 1875990..1876553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3328.1

>prot_S-ischiensis_contig14.3328.1 ID=prot_S-ischiensis_contig14.3328.1|Name=mRNA_S-ischiensis_contig14.3328.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
PSGAGTSAPSLVGRRPFPPLRHWPLPLPSPLSLAAAPSRPSVIGHCPFPR
PLICHYPFPPCSSHSACLQPSGAGTSAPSLIGRRPFPPLRHWPLPLASPL
SLAAVPSRTLSLAIATPCPSVIGRCPFPPLSHWPAPLPSPLSLDAAPSPS
CPAPPLSAPRSLPAPAIRPPLPDDHYCSTRTLTSEMG*
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mRNA from alignment at S-ischiensis_contig14:1875990..1876994+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3328.1 ID=mRNA_S-ischiensis_contig14.3328.1|Name=mRNA_S-ischiensis_contig14.3328.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1005bp|location=Sequence derived from alignment at S-ischiensis_contig14:1875990..1876994+ (Schizocladia ischiensis KU_0333)
CCTTCCGGCGCCGGCACTTCGGCCCCCTCTCTCGTTGGCCGCCGCCCCTT
CCCGCCCCTCCGTCATTGGCCGCTGCCCCTTCCCTCCCCTCTCTCATTGG
CCGCTGCCCCTTCCCGCCCCTCTGTCATTGGCCACTGCCCCTTCCCGCGC
CCTCTCATTTGCCATTACCCCTTCCCGCCCTGCTCCTCTCATTCGGCGTG
CCTGCAGCCTTCCGGCGCCGGCACTTCGGCCCCCTCTCTCATTGGCCGCC
GCCCCTTCCCGCCCCTCCGTCATTGGCCGCTGCCCCTTGCCTCCCCTCTC
TCATTGGCCGCTGTCCCGTCCCGCACGCTCTCATTGGCCATTGCCACTCC
CTGCCCCTCTGTCATTGGCCGCTGCCCCTTCCCTCCCCTCTCTCATTGGC
CGGCGCCCCTCCCCTCCCCTCTCTCATTGGACGCCGCCCCTTCCCCTTCC
TGCCCTGCTCCTCCTCTTTCGGCGCCGCGCAGCCTTCCGGCGCCCGCAAT
TCGGCCCCCTCTCCCCGATGACCACTACTGTAGTACGAGAACACTCACTT
CTGAAATGGGATAACCACTACTGTAATACGAGAACACTCAATCTCACGCA
CGCGCGGTTGTACCTCGTTGCATTTGATATGAATCACCGCCCCTTCCCTT
CCCGCCCTGCTCCTCTCATTCAGCGCGCACTGCAGCCTTCCGGCACCGGC
ACTTCGGCCCCCTCTCCCGATGATGTGGGGTAGAGGTATTTAGGGGTAAT
GAGACCTAAAATGAAGGCTAATTAGGCCGTACTTAACCTCTAAGTGCCAA
CCCTGCTCTCATTGGCCGCCGTGCAGCCTTCCGGCGCCGGCACTGCGGCC
ACCTCTCCCCGATGACGTTGGGATAGCCACTACTGCAATACCAGAACACT
CAATCTCACACACGTGCGATTGTACCTCGCTACGATTTGCTTCGAAGTAT
ATGAATCACCGCCCCTCCCCGCCCTGCTCTCATTCGGCGCGCCTGCAGCC
TTCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:1875990..1876994+

>mRNA_S-ischiensis_contig14.3328.1 ID=mRNA_S-ischiensis_contig14.3328.1|Name=mRNA_S-ischiensis_contig14.3328.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1128bp|location=Sequence derived from alignment at S-ischiensis_contig14:1875990..1876994+ (Schizocladia ischiensis KU_0333)
CCTTCCGGCGCCGGCACTTCGGCCCCCTCTCTCGTTGGCCGCCGCCCCTT
CCCGCCCCTCCGTCATTGGCCGCTGCCCCTTCCCTCCCCTCTCTCATTGG
CCGCTGCCCCTTCCCGCCCCTCTGTCATTGGCCACTGCCCCTTCCCGCGC
CCTCTCATTTGCCATTACCCCTTCCCGCCCTGCTCCTCTCATTCGGCGTG
CCTGCAGCCTTCCGGCGCCGGCACTTCGGCCCCCTCTCTCATTGGCCGCC
GCCCCTTCCCGCCCCTCCGTCATTGGCCGCTGCCCCTTGCCTCCCCTCTC
TCATTGGCCGCTGTCCCGTCCCGCACGCTCTCATTGGCCATTGCCACTCC
CTGCCCCTCTGTCATTGGCCGCTGCCCCTTCCCTCCCCTCTCTCATTGGC
CGGCGCCCCTCCCCTCCCCTCTCTCATTGGACGCCGCCCCTTCCCCTTCC
TGCCCTGCTCCTCCTCTTTCGGCGCCGCGCAGCCTTCCGGCGCCCGCAAT
TCGGCCCCCTCTCCCCGATGACCACTACTGTAGTACGAGAACACTCACTT
CTGAAATGGGATAACCTTCCGGCGCCGGCACTTCGGCCCCCTCTCTCGTT
GGCCGCCGCCCCTTCCCGCCCCTCCGTCATTGGCCGCTGCCCCTTCCCTC
CCCTCTCTCATTGGCCGCTGCCCCTTCCCGCCCCTCTGTCATTGGCCACT
GCCCCTTCCCGCGCCCTCTCATTTGCCATTACCCCTTCCCGCCCTGCTCC
TCTCATTCGGCGTGCCTGCAGCCTTCCGGCGCCGGCACTTCGGCCCCCTC
TCTCATTGGCCGCCGCCCCTTCCCGCCCCTCCGTCATTGGCCGCTGCCCC
TTGCCTCCCCTCTCTCATTGGCCGCTGTCCCGTCCCGCACGCTCTCATTG
GCCATTGCCACTCCCTGCCCCTCTGTCATTGGCCGCTGCCCCTTCCCTCC
CCTCTCTCATTGGCCGGCGCCCCTCCCCTCCCCTCTCTCATTGGACGCCG
CCCCTTCCCCTTCCTGCCCTGCTCCTCCTCTTTCGGCGCCGCGCAGCCTT
CCGGCGCCCGCAATTCGGCCCCCTCTCCCCGATGACCACTACTGTAGTAC
GAGAACACTCACTTCTGAAATGGGATAA
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