mRNA_S-ischiensis_contig14.3212.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3212.1
Unique NamemRNA_S-ischiensis_contig14.3212.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig14.3212.1 vs. uniprot
Match: A0A2P6U558_CHLSO (Protein-serine/threonine phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U558_CHLSO)

HSP 1 Score: 52.4 bits (124), Expect = 5.620e-5
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 3 
Query:   69 ADKWLPDRVFLLGFSMGGTAALDLALVFAADGRPLGGAVAICAEVLPEMLQE 224
            A  W P +V LLGFS GGT AL+LA    A G+PL   VAI A +LPE L E
Sbjct:  265 AGGWQPHKVSLLGFSQGGTVALELARQQQAAGQPLRSCVAISAALLPEQLAE 316
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P6U558_CHLSO5.620e-555.77Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:625855..628327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons3
Model size459
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3212.1prot_S-ischiensis_contig14.3212.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 625855..628327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.2132814-CDS-S-ischiensis_contig14:625854..6259311622815701.2132814-CDS-S-ischiensis_contig14:625854..625931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 625855..625931 +
1695739861.565127-CDS-S-ischiensis_contig14:625854..6259311695739861.565127-CDS-S-ischiensis_contig14:625854..625931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 625855..625931 +
1622815701.2300346-CDS-S-ischiensis_contig14:626884..6270621622815701.2300346-CDS-S-ischiensis_contig14:626884..627062Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 626885..627062 +
1695739861.573282-CDS-S-ischiensis_contig14:626884..6270621695739861.573282-CDS-S-ischiensis_contig14:626884..627062Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 626885..627062 +
1622815701.2424595-CDS-S-ischiensis_contig14:628123..6283271622815701.2424595-CDS-S-ischiensis_contig14:628123..628327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 628124..628327 +
1695739861.585217-CDS-S-ischiensis_contig14:628123..6283271695739861.585217-CDS-S-ischiensis_contig14:628123..628327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 628124..628327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3212.1

>prot_S-ischiensis_contig14.3212.1 ID=prot_S-ischiensis_contig14.3212.1|Name=mRNA_S-ischiensis_contig14.3212.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
AAKAAAAAAAAAAAPSGGWGVSVRTSGYPTAFSSWGSPWAAPRPWTWPSC
LPRTGGRWAGRWPSAPRSCRRCCRSSTGPRTSAWQQRRRRQRPQRWHQRR
PRLRQELQVRCQCRSRRPRPDCFSSPGSETRPSRRTACTPPPVTAPKGGG
QYW
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mRNA from alignment at S-ischiensis_contig14:625855..628327+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3212.1 ID=mRNA_S-ischiensis_contig14.3212.1|Name=mRNA_S-ischiensis_contig14.3212.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2473bp|location=Sequence derived from alignment at S-ischiensis_contig14:625855..628327+ (Schizocladia ischiensis KU_0333)
GCAGCGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGCCAAGCGG
GGGGTGGGGAGTGTCAGTGCGGACAAGGTATGTATATATATATATATGTA
CATATATATTTATGTATTCACGTGGTGCTTGCCGTAGTCCCGAGACCATT
GACCACGCGCCTCGTTCGAGACGGAGCAGGACCCCTCCCTCCCCTGGCAG
AGCCAGGGTGGGAGGGGGTGGCCACCCCCCCGCCAGAAGCGGAGGGGTGG
CCAGGTCCATACCCCCCCCTTTGTATGCTTCAGTATATGTACTTGGAAGT
ATGTACTCACGTGGCATGCACAGGACAATCTATTCATCCTACATGAGCGC
GCACACACACGCACACGTGCGCACACATTGCCCCTGGGTTTTCTCCAGCG
CTCCCGACACTTCACCAGAAGCCCTGCTTTTCACCCGCAGGCCACAAAAA
TAACGCAAATAAACCACAAAGAAGGGCAGTGCAGGGGCGATACAAGGGGG
TCTCTCTCGTGCCGCGTTGCGGGACGTACCTGTGAGCTTTATATGAAATC
ACCGCCTCCTTTGATGACTCCGCTCGTGATAACTTCCCCCTGATTTCCCC
GTGCCGTGGCTTCCCGACTGCGTCTTCCTCCTGGGGTTCTCCATGGGCAG
CACCGCAATTACAGTACTAACCATCGTCTCCTTTTATGACTCCGCTCGTG
AACAATCGCAGCAGTAGTCGACTTTGGTAACGCAAGTCGACTTCTGTCTT
TGAAAGTCTCAGGTAGTTGACATTTGTCATTTTCCCTAAAATTATGTACT
TCCAATTTCCCCCCGCAGTGGCTTCCCGACCGCGTCCTCCTGGGCTTCTC
CATGGACGGCGCTGCGGCCCTGGACCTGGCTTAGGGTTCAGGGTTAGGGT
TAGGGTTAGGATTTGAAAGAGAACGCTCAATCTCACACGCCTGCGATTGT
ACCTCGCTACCTCAATTTATATGAATCACTGTCCCCTTTGACGACGACTC
CGCTTGCGATTGCGTCCCCTACTTGTACAGTGGCTACCCGACCGCGTTTT
CCTCCTGGGGTTCTCCATGGGCGGCACCGCGGCCCTGGACCTGGCCCTCG
TGTTTGCCGCGGACGGGCGGCCGCTGGGCGGGGCGGTGGCCATCTGCGCC
GAGGTCCTGCCGGAGATGCTGCAGGAGTTCGACGGGCCCGAGGACTTCCG
CGTGGCAGGTGATCAATATACATTGTAACGAGGTGAAATCGCACGTGTGT
GAGATTGAGTGTTCTCGTGGTAATGGGACAACCACTAGCACGAGAACACT
CAAAGAATGGTGCCAGCTGTTGCTGCAACAGGTGCGCGAATTGCGAGTTT
TACGTGAAGCGGGTGCAACTGTCGGAGGTGGGCACTTTTTGGAGAGTACT
TCACGAAGTAGGAAGTACTCTGAAATGCGATGTAACTGCTGTAGATGGTT
CTCCTCTATGGGCGGGGCGGCGGCCATCTGCGCCGAGGTCCTGCCGGAGA
TGGTGCAGGAGTTCGACGGGCCCGAGGACTTCCTTACAGGGAATTTGTTA
TGTGTTGCTTGAAGTGGGTGCTGCAGTCGGAGGTGGACGCTTGTCGGAGA
GTACTTTCGAAGTACCGTACAGCGAAATGCAATGTACAATAGATGGTGCA
GGAGTTCGACGGGCCCGAGGACTTCCGAACAGGTGCACGAATTGCGAATT
TGCTGCGCGTCGTGAAAGCGGGTGCTGCTGTCGGGGGTGGGCGCTTGTCG
AAGAGTACTTGCGAAGTACTGTTAAATGCAATGTACAGTAGATGGTGCAG
GAGTTCGATGGGCCCGAGGACTTCCCAACAGGTGGGCGAATTGCGAACTT
GGTGCGTCACGTGAAAGCGGGTGCTGCTGTCGGAGGCGGGCACTTTTTGG
AGAGTACTTGGCGAAGTAGGAACTAGTACGGAATGCAATGTAGCTGCTGT
ACATACTGTAGTTCTCGAGGTCCTGCCGGAGATGGTGCGGGAGTTCGACG
GGCCCGAGGACTTCCGTGGCGGGTGTTGCTGCAACAGGTGCGCGAATTGC
GACTTTGACGTGTTACGCGAAGTCTCGACCGAGGCGCATGGTCAGTGGTC
TCGGGACTACGGCAAGCACAACGTGAGTACATACATATGTGGCCTAGCAG
GTGAGCCCCCCCCCCCGCATTTTCTTTCTAGTGCTCGAGTGCCACCGCAT
GCCCCGCGGGCCTGGTGCTTGACAATTGGTCACGCTGCTGCACACCCCTG
TCCCTCACCGCACCCACAGCAACGGCGCCGGCGGCAGCGCCCACAGCGGT
GGCACCAAAGGCGTCCCCGCCTTCGGCAAGAGCTTCAAGTTCGCTGCCAG
TGCAGGTCACGCCGGCCACGCCCGGACTGCTTCTCATCGCCGGGGAGCGA
GACGAGGCCGTCCCGCCGCACCGCGTGCACGCCTCCGCCCGTTACTGCGC
CCAAAGGTGGGGGCCAGTACTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:625855..628327+

>mRNA_S-ischiensis_contig14.3212.1 ID=mRNA_S-ischiensis_contig14.3212.1|Name=mRNA_S-ischiensis_contig14.3212.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig14:625855..628327+ (Schizocladia ischiensis KU_0333)
GCAGCGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGCCAAGCGG
GGGGTGGGGAGTGTCAGTGCGGACAAGGCAGCGAAGGCGGCGGCGGCGGC
GGCGGCGGCGGCAGCAGCGCCAAGCGGGGGGTGGGGAGTGTCAGTGCGGA
CAAGTGGCTACCCGACCGCGTTTTCCTCCTGGGGTTCTCCATGGGCGGCA
CCGCGGCCCTGGACCTGGCCCTCGTGTTTGCCGCGGACGGGCGGCCGCTG
GGCGGGGCGGTGGCCATCTGCGCCGAGGTCCTGCCGGAGATGCTGCAGGA
GTTCGACGGGCCCGAGGACTTCCGCGTGGCAGTGGCTACCCGACCGCGTT
TTCCTCCTGGGGTTCTCCATGGGCGGCACCGCGGCCCTGGACCTGGCCCT
CGTGTTTGCCGCGGACGGGCGGCCGCTGGGCGGGGCGGTGGCCATCTGCG
CCGAGGTCCTGCCGGAGATGCTGCAGGAGTTCGACGGGCCCGAGGACTTC
CGCGTGGCAGCAACGGCGCCGGCGGCAGCGCCCACAGCGGTGGCACCAAA
GGCGTCCCCGCCTTCGGCAAGAGCTTCAAGTTCGCTGCCAGTGCAGGTCA
CGCCGGCCACGCCCGGACTGCTTCTCATCGCCGGGGAGCGAGACGAGGCC
GTCCCGCCGCACCGCGTGCACGCCTCCGCCCGTTACTGCGCCCAAAGGTG
GGGGCCAGTACTGGCAACGGCGCCGGCGGCAGCGCCCACAGCGGTGGCAC
CAAAGGCGTCCCCGCCTTCGGCAAGAGCTTCAAGTTCGCTGCCAGTGCAG
GTCACGCCGGCCACGCCCGGACTGCTTCTCATCGCCGGGGAGCGAGACGA
GGCCGTCCCGCCGCACCGCGTGCACGCCTCCGCCCGTTACTGCGCCCAAA
GGTGGGGGCCAGTACTGG
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