mRNA_S-ischiensis_contig13.3102.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3102.1
Unique NamemRNA_S-ischiensis_contig13.3102.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2649440..2649753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.2733848-CDS-S-ischiensis_contig13:2649439..26497511622815679.2733848-CDS-S-ischiensis_contig13:2649439..2649751Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2649440..2649751 +
1695739845.8376184-CDS-S-ischiensis_contig13:2649439..26497511695739845.8376184-CDS-S-ischiensis_contig13:2649439..2649751Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2649440..2649751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3102.1prot_S-ischiensis_contig13.3102.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2649440..2649751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3102.1

>prot_S-ischiensis_contig13.3102.1 ID=prot_S-ischiensis_contig13.3102.1|Name=mRNA_S-ischiensis_contig13.3102.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
TGVAPSSTASSGPPPRAHLTTSERENTATAAASNTRPQHASATVPFPNTH
SNWDLSLPLPPQRAPSPPPPAPPPPLPRRWKRPRPGQPLPRFPLPPQARP
PPPP
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mRNA from alignment at S-ischiensis_contig13:2649440..2649753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3102.1 ID=mRNA_S-ischiensis_contig13.3102.1|Name=mRNA_S-ischiensis_contig13.3102.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=314bp|location=Sequence derived from alignment at S-ischiensis_contig13:2649440..2649753+ (Schizocladia ischiensis KU_0333)
ACAGGGGTTGCACCAAGCTCAACCGCTAGCAGCGGGCCACCGCCCAGGGC
CCACCTCACAACCTCAGAGAGAGAGAACACGGCCACGGCAGCTGCGAGCA
ACACGCGCCCTCAGCACGCCTCGGCAACTGTCCCGTTTCCCAACACTCAC
AGCAACTGGGACCTCAGTCTGCCGCTGCCGCCGCAGCGGGCGCCGTCGCC
GCCGCCGCCGGCCCCCCCGCCTCCGCTGCCGCGTCGGTGGAAGAGGCCGA
GGCCGGGGCAGCCGCTGCCGCGGTTTCCACTCCCGCCGCAGGCCCGGCCG
CCACCGCCTCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2649440..2649753+

>mRNA_S-ischiensis_contig13.3102.1 ID=mRNA_S-ischiensis_contig13.3102.1|Name=mRNA_S-ischiensis_contig13.3102.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig13:2649440..2649753+ (Schizocladia ischiensis KU_0333)
ACAGGGGTTGCACCAAGCTCAACCGCTAGCAGCGGGCCACCGCCCAGGGC
CCACCTCACAACCTCAGAGAGAGAGAACACGGCCACGGCAGCTGCGAGCA
ACACGCGCCCTCAGCACGCCTCGGCAACTGTCCCGTTTCCCAACACTCAC
AGCAACTGGGACCTCAGTCTGCCGCTGCCGCCGCAGCGGGCGCCGTCGCC
GCCGCCGCCGGCCCCCCCGCCTCCGCTGCCGCGTCGGTGGAAGAGGCCGA
GGCCGGGGCAGCCGCTGCCGCGGTTTCCACTCCCGCCGCAGGCCCGGCCG
CCACCGCCTCCGACAGGGGTTGCACCAAGCTCAACCGCTAGCAGCGGGCC
ACCGCCCAGGGCCCACCTCACAACCTCAGAGAGAGAGAACACGGCCACGG
CAGCTGCGAGCAACACGCGCCCTCAGCACGCCTCGGCAACTGTCCCGTTT
CCCAACACTCACAGCAACTGGGACCTCAGTCTGCCGCTGCCGCCGCAGCG
GGCGCCGTCGCCGCCGCCGCCGGCCCCCCCGCCTCCGCTGCCGCGTCGGT
GGAAGAGGCCGAGGCCGGGGCAGCCGCTGCCGCGGTTTCCACTCCCGCCG
CAGGCCCGGCCGCCACCGCCTCCG
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