mRNA_S-ischiensis_contig13.2975.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A6H5KIG1_9PHAE (Rtt106 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG1_9PHAE) HSP 1 Score: 134 bits (338), Expect = 9.130e-35 Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 1 MSGVPQGKADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLLATR 360
+S V Q DRGLF +R GK+FV+CY GVNEG+L+PLK+GLLF+KPA+FLP+ +I VVCGRGGSA TRYVDLVV GE A+ Q EF++I+R+ LP+LQ+Y Q+ L+A R
Sbjct: 201 LSRVQQVAPDRGLFASRDGKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRADIQEVVCGRGGSATTRYVDLVVGLEAEDEHGELVAKQQQ---EFSNIDRDALPSLQSYIQDALVAPR 317
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A7S1BZF1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZF1_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.520e-23 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 MSGVPQG--KADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEV 345
+S PQG A +G+ ++ CY GV+ G LYPLKEG+LF KP VF+P++ I S+ CGRGGS TRY+DL+V + SA + E + +EFT+I RE+L L Y +EV
Sbjct: 300 ISPSPQGLPSAFHSSCEGHVGQPYIHCYSGVDSGILYPLKEGILFFKPMVFIPRKNIESITCGRGGSG-TRYIDLLVTVTCKKSADDQET--AEEVIEFTNILREELEGLTVYVKEV 413
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: B7FW81_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW81_PHATC) HSP 1 Score: 95.9 bits (237), Expect = 1.130e-20 Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 55 GKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
G FV+CY GV++G LYPL+EGLLF KP F+P++++AS+ CGRGG +RYVDL + T+ T EFT+I R++L + +Y E L+
Sbjct: 299 GMPFVKCYHGVHDGVLYPLREGLLFFKPPCFVPRQKLASIACGRGGDTSSRYVDLTLTTTQD-----------NETFEFTNIHRDELATINSYIHETLI 386
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A7S1W059_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1W059_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.380e-18 Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 55 GKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAG-EGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
G FV+CY+GVN+GALYPLKEGLLF KP F+P+ + S+ CGRG +RYVD+V+ G EG++ +EF++I+R +L L Y +VL+
Sbjct: 286 GMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGG-SRYVDMVLSLKDATEEGKEGDS------LEFSNIDRNELRVLNHYIHDVLV 378
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A7S4S6B6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S6B6_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.690e-18 Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 55 GKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAG-EGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
G FV+CY+GVN+GALYPLKEGLLF KP F+P+ + S+ CGRG +RYVD+V+ G EG+ +EF++I+R +L L Y +VL+
Sbjct: 289 GMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGG-SRYVDMVLSLKDATEEGKEGD------NLEFSNIDRNELRVLNHYIHDVLV 381
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: B8CDZ5_THAPS (Rtt106 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDZ5_THAPS) HSP 1 Score: 83.2 bits (204), Expect = 3.500e-16 Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 64 FVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
FV CY G+N+GAL+PL+EGLLF KP +F+P+ ++AS+ CGRG S +RYVD+ ++ + S +EFT+I R++L L Y L+
Sbjct: 298 FVGCYHGMNDGALFPLREGLLFFKPPLFVPRSKLASISCGRG-SGNSRYVDMAIQLDSDDS------------MEFTNIHRDELGGLNDYIHTTLI 380
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A7S2UIU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIU8_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.140e-16 Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 19 GKADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
G ++ T G FV+CY+GV++GAL+PL+EGLLF KP +F+ + ++ S+ CGRG S +RYVDL + E E + +EFT+I R ++ L Y +VL+
Sbjct: 133 GGGEQQTSTTTAGMPFVKCYKGVHDGALFPLQEGLLFFKPPLFVHRSKMHSISCGRG-SGPSRYVDLRITL---------EEEHKEQELEFTNINRPEVTVLNQYIHKVLI 233
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: K0SQN8_THAOC (THO complex subunit 2 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQN8_THAOC) HSP 1 Score: 81.6 bits (200), Expect = 1.370e-15 Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 34 GLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
G + G V C++G N+GALYPL+EGLLF KP +F+P+ +AS+ CGRG +R+VD++V+ G ++ +EFT+I R++L L Y + L+
Sbjct: 1897 GASSTSAGLPCVTCHQGFNDGALYPLREGLLFFKPPMFIPRSSLASISCGRGPGG-SRFVDMMVQLDDDEEEGSKKSN----NLEFTNINRDELSKLNDYIHKTLI 1997
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A1Z5JUQ6_FISSO (Rtt106 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUQ6_FISSO) HSP 1 Score: 81.3 bits (199), Expect = 1.400e-15 Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 16 QGKADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
Q D T G FV+CY GV +GALYPL EGLLF KP +F+P+ E+ S+ CGR G RYVDL V AG+ V+FT+I+R ++ L+ Y + L+
Sbjct: 211 QSHQDEATSTTTGGMPFVKCYYGVQDGALYPLLEGLLFFKPPLFIPRSEMESIGCGRDGG---RYVDLQVTV-----AGQ--------QVDFTNIQRAEINELRDYIHQKLI 306
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Match: A0A1Z5K9T5_FISSO (Rtt106 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T5_FISSO) HSP 1 Score: 81.3 bits (199), Expect = 1.430e-15 Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 16 QGKADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLPKREIASVVCGRGGSAQTRYVDLVVETSTPASAGEGEAEPVQATVEFTSIEREDLPALQAYAQEVLL 351
Q D T G FV+CY GV +GALYPL EGLLF KP +F+P+ E+ S+ CGR G RYVDL V AG+ V+FT+I+R ++ L+ Y + L+
Sbjct: 208 QSHQDEATSTTTGGMPFVKCYYGVQDGALYPLLEGLLFFKPPLFIPRSEMESIGCGRDGG---RYVDLQVTV-----AGQ--------QVDFTNIQRAEINELRDYIHQKLI 303 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig13.2975.1 >prot_S-ischiensis_contig13.2975.1 ID=prot_S-ischiensis_contig13.2975.1|Name=mRNA_S-ischiensis_contig13.2975.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp MSGVPQGKADRGLFTNRIGKAFVRCYRGVNEGALYPLKEGLLFLKPAVFLback to top mRNA from alignment at S-ischiensis_contig13:1174989..1178019- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig13.2975.1 ID=mRNA_S-ischiensis_contig13.2975.1|Name=mRNA_S-ischiensis_contig13.2975.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3031bp|location=Sequence derived from alignment at S-ischiensis_contig13:1174989..1178019- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig13:1174989..1178019- >mRNA_S-ischiensis_contig13.2975.1 ID=mRNA_S-ischiensis_contig13.2975.1|Name=mRNA_S-ischiensis_contig13.2975.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig13:1174989..1178019- (Schizocladia ischiensis KU_0333)back to top |