mRNA_S-ischiensis_contig13.2957.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2957.1
Unique NamemRNA_S-ischiensis_contig13.2957.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.2957.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.150e-20
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 EGPIRVALSGLQPEDRAAAVSVVKALARSHRQARATLVDDSDPSAPFTHLVIPDAGRRTLRVLFALCAPPRGPRGALPAIVTPDWLYSSLDANAFLD 294
            +G +RVA SG+QP DR AA SVV++L+R+HR    + V  SD  A +THLVIPD  RRTL+VLFALCAP   P G  P +VT  WLY SL+   F+D
Sbjct: 1850 QGVVRVAFSGMQPGDRQAAASVVRSLSRTHRP-HGSGVCTSDAEA-YTHLVIPDVSRRTLKVLFALCAP-LSPNGRPPVVVTVAWLYESLEKGFFVD 1943
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BLAST of mRNA_S-ischiensis_contig13.2957.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.890e-19
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    4 EGPIRVALSGLQPEDRAAAVSVVKALARSHRQARATLVDDSDPSAPFTHLVIPDAGRRTLRVLFALCAPPRGPRGALPAIVTPDWLYSSLDANAFLD 294
            +G +RV  SGLQP DR AA SVV++L+++HR    + V  SD  A +THLVIPD  RRTL+VLFALCAP   P G  P +VT  WLY SL+   F+D
Sbjct: 1600 QGVVRVVFSGLQPGDRQAAASVVRSLSKTHRP-HGSGVCMSDAEA-YTHLVIPDVSRRTLKVLFALCAP-LSPNGRPPVVVTVAWLYESLEKGFFVD 1693
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC6_9PHAE2.150e-2055.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1G0_ECTSI1.890e-1954.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:994963..997442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2957.1prot_S-ischiensis_contig13.2957.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 994963..997442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.9163218-CDS-S-ischiensis_contig13:994962..9950371622815685.9163218-CDS-S-ischiensis_contig13:994962..995037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 994963..995037 +
1695739850.3845203-CDS-S-ischiensis_contig13:994962..9950371695739850.3845203-CDS-S-ischiensis_contig13:994962..995037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 994963..995037 +
1622815685.9360225-CDS-S-ischiensis_contig13:995289..9954001622815685.9360225-CDS-S-ischiensis_contig13:995289..995400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 995290..995400 +
1695739850.3937674-CDS-S-ischiensis_contig13:995289..9954001695739850.3937674-CDS-S-ischiensis_contig13:995289..995400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 995290..995400 +
1622815685.9491627-CDS-S-ischiensis_contig13:997328..9974421622815685.9491627-CDS-S-ischiensis_contig13:997328..997442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 997329..997442 +
1695739850.409118-CDS-S-ischiensis_contig13:997328..9974421695739850.409118-CDS-S-ischiensis_contig13:997328..997442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 997329..997442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2957.1

>prot_S-ischiensis_contig13.2957.1 ID=prot_S-ischiensis_contig13.2957.1|Name=mRNA_S-ischiensis_contig13.2957.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
AEGPIRVALSGLQPEDRAAAVSVVKALARSHRQARATLVDDSDPSAPFTH
LVIPDAGRRTLRVLFALCAPPRGPRGALPAIVTPDWLYSSLDANAFLDPS
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mRNA from alignment at S-ischiensis_contig13:994963..997442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2957.1 ID=mRNA_S-ischiensis_contig13.2957.1|Name=mRNA_S-ischiensis_contig13.2957.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2480bp|location=Sequence derived from alignment at S-ischiensis_contig13:994963..997442+ (Schizocladia ischiensis KU_0333)
GCTGAAGGTCCGATTCGAGTGGCGTTGTCGGGTCTGCAGCCGGAGGACCG
GGCGGCGGCTGTGAGCGTTGTTAAGGTGGGTGTTTGTGGACTAGAGTAGA
GACTGTACTCGAGTATCTGGATGATGTGGACAAGTAGAGCTCTGGCAAGG
GCGAGTGGGGTAAAACAATGATGGGATGTGATGCGATGTGCAGTGTACTG
TACTGTACCACAATCGTCGGAGAGACCTTGCATGTAACCTATAAAACGGG
CGTCGTGTTTGACCTGCCCCCACCATCTCTCCTCTCCCTCTCCACCCCCC
CCCCCCCCCCCCATCGCTCCCTCGCAGGCGCTGGCCAGGAGCCACCGCCA
GGCCCGGGCCACGTTGGTGGATGATTCCGACCCATCCGCGCCCTTCACCC
ACCTGGTCATACCCGACGCCGGCAGGAGGACCCTCAGGGTGAGACATACT
TGGCACTACCACTTCGAACTACTGTACTGGTACTCGTAGTACCACTGTAA
TAAGGTACTCGCGCTAGTATTTTGAAGTGTATGGTACTAGTAGTACTTGT
TCTGACCCATCGGCGCCCTTCACCCACCAGGTCATACCGGATGCCGGAAG
GAGGACCCTCAGGGTGAGACATGCTTGGCACTACTGCTGTAGTACTTTGT
CGTACTCGTAGTACTACTGTAGTACTGCTGTAGTACTCGTGCTAGAGAGT
ATTTCGGAGTGCATTGCAGTACTTGTTCGGACCCATCAGCGCCCTTCATC
CACCTGGTCGTGCCGGACGCCGGCCGGAGGACCCTCAGGGTCAGACTGCT
TCGCTACGGTTGTGAACTGGCAAGGCCCACCACTTTACTTTTAACCGGTC
TTGTGACCGGTCTGTTTAACCGGTTGGTGGTAACGGCTAAAGTATTGCCA
AAATCGAAGAATAACGGTCAGGTCACCCGCTCCGGGTACATGAGTGGCCG
CCGGTCGGTTAACAGCTCAAACCAGTTAACTGGTACTGACACCAGTCCAC
AACCCTATACTTGGTTGTGCTAGTACTACTTCGTACGTAGTAGTCGTACT
CGAGTACTAGTACTTAGAAGTGCAGTGCCTTCTTGTTCTGCGAAGCGCTT
GAGTGTTTCACCGTAAGTACTGTGTCAGAGTGTTGTTTCTCATAGTGCTA
GTACTTTGCAGTGTATTGTACTGTAGTACTTGTTCTTCGAAATACTCGAG
TGGTTTGCCGTGCGTATTGTGTTAATGTAAGAGTGGTGTCGAGAAACAAA
GAGATGCTCCCGAAGCGCGTGGGGGTACCTATATGCTGTGGGTAAGTACG
CCGGCTGGAGGACCCCTCAGGGCCGGACCTACTTCAAAAGGCCCTATAAA
TACAGTAGTGGTAATACTGGCAATACTCATTTTCCCCACACAACTTTCCC
CTGGCGAGCTATAAGGAAAGGCCACTGCTGAGGTCTTTAGTGACGTGGCC
TGCACCTCGCCCTGTGTTGTTCCTGCTGGTACTGACAATACCTGCGTACA
TACTATAGTACGAAGTACAAGTACTTCGTAGCTCTAGAGCAATGCAGCAG
AAGTGATCGACTCCGGTGGGTGCAAGTCTCGTACACACCACTGTGCAGTA
ACACCGTACAGTACAGTGCAGCAATCGTAGAGTGCAATTTACTGTGCCGC
TGCACGGGCAGCTGGTCGTCAGGTGCGAGCACACACTTCGGGAGAAGTTT
CACGCGCACGCACGACCCACATACACACACAAACACAAACTACGTACAAT
TACACATACACACACAAACACAAACTGCGTACAATTACCACCTCCGCCCC
CGCCTCCCGCCCCTCGCCCCTCGCGTCCCACTCCCACACCCAACGCAAGT
GCACATACGCCCGCTCCCCCCAACCCCACCCTCCCGCCATTCGCCTCCCA
TCCCCAAACACGACGAGCGCGCACACACACACACACACAAAATGCATGTT
TCTAGCGTTTACCCGGTTTACCGACCAGTGGCCAATCATGGAGCCGGAGC
TGGTGACATGGCCGTTCTTGGTTGATTTTGGCAATACGGTTTAGCCGCAA
CCGGCAACCGGTTAAACCGACCGGTCACAAGACCGCTTAACAGTCAAACT
GGTAGGCCTTGCCACTTCACAACCCTACCCACCAGGATATGCAATGCAGA
GCGCGTTTGCTCATGCCTTCCCGCGTCTCTACCCCCCCCCCCGCACACAC
ACACACACACACATGCACACGCACAGGGTGCTTTTCACCCTCTGCGCGCC
CCCCCGGGGCCCCCGTGGCGCCCTGCCAGCCATCGTCACACCGGACTGGC
TGTACTCCTCCCTAGATGCCAATGCCTCCCAACCCCAACCCCACACACAA
CCCCCCCCCCCCGCAGGTGCTTTTTGCCCTCTGCGCACCCCCCCGGGGCC
CCCGCGGCGCCCTCCCCGCCATCGTCACCCCGGACTGGCTGTACTCCTCC
CTCGACGCAAACGCCTTCCTAGACCCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:994963..997442+

>mRNA_S-ischiensis_contig13.2957.1 ID=mRNA_S-ischiensis_contig13.2957.1|Name=mRNA_S-ischiensis_contig13.2957.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig13:994963..997442+ (Schizocladia ischiensis KU_0333)
GCTGAAGGTCCGATTCGAGTGGCGTTGTCGGGTCTGCAGCCGGAGGACCG
GGCGGCGGCTGTGAGCGTTGTTAAGGCTGAAGGTCCGATTCGAGTGGCGT
TGTCGGGTCTGCAGCCGGAGGACCGGGCGGCGGCTGTGAGCGTTGTTAAG
GCGCTGGCCAGGAGCCACCGCCAGGCCCGGGCCACGTTGGTGGATGATTC
CGACCCATCCGCGCCCTTCACCCACCTGGTCATACCCGACGCCGGCAGGA
GGACCCTCAGGGCGCTGGCCAGGAGCCACCGCCAGGCCCGGGCCACGTTG
GTGGATGATTCCGACCCATCCGCGCCCTTCACCCACCTGGTCATACCCGA
CGCCGGCAGGAGGACCCTCAGGGTGCTTTTTGCCCTCTGCGCACCCCCCC
GGGGCCCCCGCGGCGCCCTCCCCGCCATCGTCACCCCGGACTGGCTGTAC
TCCTCCCTCGACGCAAACGCCTTCCTAGACCCCAGCGTGCTTTTTGCCCT
CTGCGCACCCCCCCGGGGCCCCCGCGGCGCCCTCCCCGCCATCGTCACCC
CGGACTGGCTGTACTCCTCCCTCGACGCAAACGCCTTCCTAGACCCCAGC
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