mRNA_S-ischiensis_contig13.2900.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2900.1
Unique NamemRNA_S-ischiensis_contig13.2900.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:440083..443831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2900.1prot_S-ischiensis_contig13.2900.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 440083..443637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.7294486-CDS-S-ischiensis_contig13:440082..4401431622815671.7294486-CDS-S-ischiensis_contig13:440082..440143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 440083..440143 -
1695739842.0211775-CDS-S-ischiensis_contig13:440082..4401431695739842.0211775-CDS-S-ischiensis_contig13:440082..440143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 440083..440143 -
1622815671.7472966-CDS-S-ischiensis_contig13:443497..4436371622815671.7472966-CDS-S-ischiensis_contig13:443497..443637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 443498..443637 -
1695739842.0333834-CDS-S-ischiensis_contig13:443497..4436371695739842.0333834-CDS-S-ischiensis_contig13:443497..443637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 443498..443637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.7618785-UTR-S-ischiensis_contig13:443637..4438311622815671.7618785-UTR-S-ischiensis_contig13:443637..443831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 443638..443831 -
1695739842.0438385-UTR-S-ischiensis_contig13:443637..4438311695739842.0438385-UTR-S-ischiensis_contig13:443637..443831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 443638..443831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2900.1

>prot_S-ischiensis_contig13.2900.1 ID=prot_S-ischiensis_contig13.2900.1|Name=mRNA_S-ischiensis_contig13.2900.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
MAGRKRKREACPDEGERDGGGVLATLMSSLFHGLQWIAKASPAASKRRTS
RSRAGDEGGAGEGAGDA
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mRNA from alignment at S-ischiensis_contig13:440083..443831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2900.1 ID=mRNA_S-ischiensis_contig13.2900.1|Name=mRNA_S-ischiensis_contig13.2900.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3749bp|location=Sequence derived from alignment at S-ischiensis_contig13:440083..443831- (Schizocladia ischiensis KU_0333)
GCTTGATGATGGCCAATTCTTGCCCGTGTGTCATCGATGGGGCCAGGACG
ACCGACCATAATAATTACAGAGCTGCAAGCGGGCACTAAGGCCAGGTCTT
GAGGTGGTACCGGGGGGCGGCGGGGTGCCCGGCAGCTGTGGAAAACGACG
TGGACGCGGGGGGTGGCAAGGATCCGCGCGACGAACGGGCGCGCATGGCT
GGGAGAAAAAGGAAGCGGGAGGCCTGCCCCGACGAGGGGGAACGAGATGG
CGGAGGAGTTCTCGCGACGTTGATGAGCTCGCTGTTTCATGGCCTGCAAT
GGATTGCCAAGGCCTCCCCGGCTGCCTCAAAAAGGTGGGGCCAACATGTC
CCGGGCGGATGATATTTTGCTCGCTGATAGCAATACCCGTGGCCACCTGC
CCACACGTCAATGCGCATCTGCGACTCAGCTCCACACCCCGCCTGCGTAC
ATAGGTGTCATTGTTTCGGCCCGCCGTAGAAAAGAGAAATTGTTCATTTG
GGCCCAAAATCTTGTCCCTCTGGGGCCCAAACTTTTCTGGTTCTCTTGTG
CCGGACAAGGGTCCCTCCGGGGCCCGGCCCCTCGCTGGCCCTCTCGGGGT
CGGTGTCACCGCAAGCAAGCCTGTTGCCGTGTGGTAAGGGATCAACATGC
TCGTGCTTATGGCCCCTAGATCAGCGCCACGCGAGCACGGCATCCCTCGG
CCCCAGCATCTCCAAGCCGGCTTCTTGTGGTATGTACCCCAGCTAGGTTG
AAGGCAACTGGCTACTTAAGGCTTGCTTGTGGGACCGGCAACTGCAAGGC
TTGTTCTCAGTGCACGTGTGCTGTACTGCCCATTGCTTGGAATGTGTGTC
TGTCGTGTATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCAT
TGACCCCGCGCCTCGTGCGAGACGGAGCAGATGTATATTGGTGTATTTCC
ACGGTTTTATGGTTGCTGCAGTGTTTACAGTAGAAGAGTTACGAGCTGGA
GCCGGTTTTACCGGTCGGTTCCAGTCAACCGGTTTAACCGGTTAGCCGAC
CGGTGGCCTACCAGTTTTCGCCAGTTGTTTTCTCCTTAAAATCGTGCACA
TTTGGCCTTTCGATATAGCCGCTGAGCCCTTGACTTGCCTGTAAACCGTT
AACGGCTTCGTAAAACCGGCAAAAACCGGCGATAGCTGGTTCAGTCACCA
GTTAACTGGTGCCAAAAACATAACCGGTAAAAACCGGCCAAACCAAACTG
GTTGCAAAACCAGTCACCAGTTAAACTGGTACGGGCCGCCAGTTCACAAC
TCTACAGCAGTGTTGAGAGCTCTAATCGTGTTTTAGGAGAGCGAAGATTG
TCAGGTGTTTATCATAGGTGCAGAGGGCGTTTGGGCCCTTCCGCCGGAAG
AAATTCCTTTTCTTCCCTTCATGCTTCCCTCCGTGCTTTGCTCCTTGTTC
TTTCTATAGCAGCGCCCATTGGGATGTTCATACTTGTATTGTGCCATATA
TATATTGTAAATACAGACGTTAGGCTCTACTGCGGAAGGGCATAGTAAAT
AAGACCGGCCCACGTTTAAATTCATAGCTCGGGATTGAGACCGAGATAGT
TGCGGTGTGATAGCTCGTTCGAAAGGCCCTGGCCGAGCGCTTAGACTTCA
ATATTGCCGCCGAAAATCGTCAATGTCAATATTCAATATTTTCCAGCGGT
TTTCGATCAATATTTATACACATGTGAGGTGTGTTTAACTGTAGGTGCGT
GTGAAGTGCAAAAGCTGGAGCGGCACAGTGGCTCTAATGCTAAAGGCTAC
TTGGAAGGTGTGTAATCTATTGCTAAAGGCTACTTAAGAAGGCGTGTAAT
CCCGAGCGGTGGGGCGTATGCCCAGGCTGTGACGTCCACTGTGGACGACA
ATAAAATTTCTATCAATACATGCATATGTATGTACTCACGTTGTGCTTGC
CGTAGTCCCGAGACCATTGACCGCGCGCCTCGGCCGAGACAGACGGAGAT
ATATCGAATATTGATTGATTTTTCAAACTGTCAATCGATTTTCAATACGT
TGATTTTTTGATCAAATATTGTCGTTAACGGCTATCCGAAGGTCAAAAAT
AGCCGGTAACGCTATCTGGTGGGTGCTTAAAGTACCGTTCCCGGCTAGCG
GGCGTCAACCAGTCCCTGTGAACACCGGTACCGGCTACTTGGCAAGCAGA
AAAGTGCACGATTTTAAAGGGGACCATATTGATTGACCTGGCAGGCGATC
AATATCAATATCAGCATATATGTACTCACGTGGTGCTTGCCGTAGTCCCG
AGACCATTGACCCCGCGCCTCGATCGAGACGGAGCATATCGACCAATTTC
ATTTTTAAAATGATTTTGATGGCAATCGATTTTTTCAATATCATCAATCA
AGATTTTTTTCAAGGATAGACACGGGCTCCACAAATCGGTACGGATCCGG
TTCCGGCCCGGCCAAATGCCATGGTCACGGGCGGGCCGGGCCGCCAGGCC
CACGGACGGTAACGGGTCGGACGGGCCGAGCCTGGCAATCCACGGGCCTA
GTGCGGGCGGGCCCGCCAGACCACCGATCCCACGGGTCGCCGCGGGCGGC
CCAACGGTCTACGGGCCGGGCCGGATAGGTTGTCGCCTTCGGCGCCCCGG
CTCAGGCGGGCCGCGGGCCGCTGCGCGGCCAGCGGGCCAGGCGGGCCCGA
GCCCTGGCCTTCGGCCCGGGCTCGGGCGAGCCGCGGGCCGCTGCGCGGCC
GACGGGCCTGGGCGGGGCCCGAGCCGGGGCCTTCGGCCCCTCACGGGCCG
CCCGGGTTGGGCCCCAAATCGCTCAGCCCGTGAATTCCGGCCCGCGGGTC
CAGGCCGTGTCGGCCAGCAAACAGAGTATCGGCAACCAAAGCTAACAATA
ATTGTCAATTTACTTGTAAATGACTGGTTTTCTTTTTAAAAAGTATTTTG
ATGGTTTGTTCGATGTCGATGAGCTGGCGGGAGGATCGGCCGAACCCGCT
CAGCCGGATCGATGCGCGTCCGACCTGGACGGGCCCGAGACGGGCCTTCG
GTCCTGGCTCGCGCGGGCCACGGGCCGCTTCACGGCCAGCGGGCCGGGGC
GGGCCGAGCCCGGGTCTTGGGTGGGTGGGCCGCGGGCCGCTGCGCGGCCG
ATGGGCCTGGGCGGGGCCCGAGCCGGGGCCTTCGGCCCCTCACGGGCCGG
GCGGGTTGGGCCCCAAATCGCTCAACCCGCGGATTCCGGCCCGCGGGTCC
AGGCCCGTGTCTAACCTTGACCTTTTTCAGTACTGAGCTCCATGGCACGG
CGGGCATGGGGCGACCCCGTGCGACATGAGTCATTCCTCGTGCAACACCG
TATGGTTTGATATCACATCACATCACGTCCTAAAACGGGCCTGTAGCCGT
GGCAGCAGCAGGCGCACCAGCAGCCGCGCCGGGATGGGGTAATAGCAACC
CTGTCCTACATGAGTTACAACACAGTGCAATATGTTTTGATATCGCATCA
CATCACATCACATCACATCACGTCCTTAAAACGGACCTGTAGCCGTGGCA
GCAGACGCACCAGCAGCCGCGCCGGGGGTGAAGGTGGTAGTACCAACCCT
GTCCGACATGAGTTGTAACACAGTATGGTTCGATATCACATCACATCACA
TTGTGTACTAAAACGGACCCGCAACCGTGGCACAGCAGACGCACCAGCCG
CAGCCGCGCCGGGGATGAGGGTGGAGCGGGAGAAGGAGCGGGGGACGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:440083..443831-

>mRNA_S-ischiensis_contig13.2900.1 ID=mRNA_S-ischiensis_contig13.2900.1|Name=mRNA_S-ischiensis_contig13.2900.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig13:440083..443831- (Schizocladia ischiensis KU_0333)
ATGGCTGGGAGAAAAAGGAAGCGGGAGGCCTGCCCCGACGAGGGGGAACG
AGATGGCGGAGGAGTTCTCGCGACGTTGATGAGCTCGCTGTTTCATGGCC
TGCAATGGATTGCCAAGGCCTCCCCGGCTGCCTCAAAAAGATGGCTGGGA
GAAAAAGGAAGCGGGAGGCCTGCCCCGACGAGGGGGAACGAGATGGCGGA
GGAGTTCTCGCGACGTTGATGAGCTCGCTGTTTCATGGCCTGCAATGGAT
TGCCAAGGCCTCCCCGGCTGCCTCAAAAAGACGCACCAGCCGCAGCCGCG
CCGGGGATGAGGGTGGAGCGGGAGAAGGAGCGGGGGACGCTACGCACCAG
CCGCAGCCGCGCCGGGGATGAGGGTGGAGCGGGAGAAGGAGCGGGGGACG
CT
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