mRNA_S-ischiensis_contig13.2898.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2898.1
Unique NamemRNA_S-ischiensis_contig13.2898.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:432351..433733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2898.1prot_S-ischiensis_contig13.2898.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 432351..433704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.6131046-CDS-S-ischiensis_contig13:432350..4324351622815671.6131046-CDS-S-ischiensis_contig13:432350..432435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 432351..432435 -
1695739841.9591434-CDS-S-ischiensis_contig13:432350..4324351695739841.9591434-CDS-S-ischiensis_contig13:432350..432435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 432351..432435 -
1622815671.6261706-CDS-S-ischiensis_contig13:433537..4337041622815671.6261706-CDS-S-ischiensis_contig13:433537..433704Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 433538..433704 -
1695739841.9699326-CDS-S-ischiensis_contig13:433537..4337041695739841.9699326-CDS-S-ischiensis_contig13:433537..433704Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 433538..433704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.636764-UTR-S-ischiensis_contig13:433704..4337331622815671.636764-UTR-S-ischiensis_contig13:433704..433733Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 433705..433733 -
1695739841.9814095-UTR-S-ischiensis_contig13:433704..4337331695739841.9814095-UTR-S-ischiensis_contig13:433704..433733Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 433705..433733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2898.1

>prot_S-ischiensis_contig13.2898.1 ID=prot_S-ischiensis_contig13.2898.1|Name=mRNA_S-ischiensis_contig13.2898.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
MTTSDVVYVCDYQYQQGDVVAMYNLLLGNAQPALPLGGALTGRRRPPVTA
ATFLLRYLRKMQDAAPTPPGGERSPWSTPATSIP
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mRNA from alignment at S-ischiensis_contig13:432351..433733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2898.1 ID=mRNA_S-ischiensis_contig13.2898.1|Name=mRNA_S-ischiensis_contig13.2898.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1383bp|location=Sequence derived from alignment at S-ischiensis_contig13:432351..433733- (Schizocladia ischiensis KU_0333)
GTGCTGGGAGGGACCCTGCCCCACCCCCTATGACTACCTCGGACGTGGTG
TACGTGTGTGACTACCAGTACCAGCAGGGTGACGTTGTGGCCATGTACAA
CCTGTTGCTGGGTAACGCACAGCCGGCGTTGCCCTTGGGGGGGGCGCTGA
CGGGGCGGCGGCGGCCGCCGGTGACGGCGGCGACCTTCCTGCTGCGGTGG
GTGATGTGATGTGATGTGATGTGGTGTGGTGTCGAACTGCAGTACACTAG
AATAAACATCACACCACATCGTATCGAATCACATCACATACTTGGAAGCA
ACTACCGTATTTGTCGGAGAGATCACCACACCCCCCCGGGACAATTTGCG
GTGGGACTCAACAGGGCAGGAATGCCGCTGATTTGAGCCTTTTCGGTAGC
GTAAGCGTCGCGGCCGATGCGGTCCGTGCGCGATAGACGTTTTTTTTTCT
TCTTTTTTGGACCGAGGTGCGCGACATGCACTAGTGCGATGACCCTACAC
GTCGCATTTGCTGTCGGGGAGCGGATGCTGGGGGGCTGTGAGCGCGTCCG
GGTGATGCGTGATGTGATGTGATGTGATGCGGTGTGATGTGATGGGATGT
GATGTGGAGTTGTGTGATGTGATGTGATGCGATGTGACTTGATGTGATGT
GATTCAATGCGCGCTCGAACGTAGACACCCCTCTGTTTCCTGCTCGCTTC
TGTTCTCTCCTCACGGAAGTGTGGCTGTTGGACATCGCGTCACATCACAT
CACATCACATCACGGCACATCGCATCACGTCGCACCGCGTCGCATCGTAT
GGGACCCCGTCGAATCGCATCGCGTCACATCACATCACATCACGCCACAT
CACGTCACATCACATCACATCACGCAACACCACATGATGCCACTTCACAT
CCCATCACACACCACACGACACGACACCACATCACATCACATCACATCAC
ACAACTCCACGTGATGTCACATCACATCACATCGCGCCACATCACATCAC
ATCACACAACTCCACATCACGTCGCACCCCATCCCATCGCATCACATCAC
ATCACATCATACAACACCACATCGCTTCACATCACATCACACTACGTCAC
AATACCACATGATGTCACATCACACCACACCACACCACACCATGTCACGT
CGCATCACATCACGCAACACCACATCACATCACACCACACCACACCACAT
CACATCACACAACTCCAAATCACATCACACCACATCACACCACACCACAC
CACACCACATCACATCACATCACAAATTTAATCTCCCCCCCCCCCTAGGT
ACCTCCGCAAGATGCAAGACGCCGCCCCAACACCTCCAGGGGGGGAACGT
TCACCTTGGTCAACCCCTGCCACCAGCATCCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:432351..433733-

>mRNA_S-ischiensis_contig13.2898.1 ID=mRNA_S-ischiensis_contig13.2898.1|Name=mRNA_S-ischiensis_contig13.2898.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig13:432351..433733- (Schizocladia ischiensis KU_0333)
ATGACTACCTCGGACGTGGTGTACGTGTGTGACTACCAGTACCAGCAGGG
TGACGTTGTGGCCATGTACAACCTGTTGCTGGGTAACGCACAGCCGGCGT
TGCCCTTGGGGGGGGCGCTGACGGGGCGGCGGCGGCCGCCGGTGACGGCG
GCGACCTTCCTGCTGCGATGACTACCTCGGACGTGGTGTACGTGTGTGAC
TACCAGTACCAGCAGGGTGACGTTGTGGCCATGTACAACCTGTTGCTGGG
TAACGCACAGCCGGCGTTGCCCTTGGGGGGGGCGCTGACGGGGCGGCGGC
GGCCGCCGGTGACGGCGGCGACCTTCCTGCTGCGGTACCTCCGCAAGATG
CAAGACGCCGCCCCAACACCTCCAGGGGGGGAACGTTCACCTTGGTCAAC
CCCTGCCACCAGCATCCCTGTACCTCCGCAAGATGCAAGACGCCGCCCCA
ACACCTCCAGGGGGGGAACGTTCACCTTGGTCAACCCCTGCCACCAGCAT
CCCT
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