mRNA_S-ischiensis_contig126.2849.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig126.2849.1
Unique NamemRNA_S-ischiensis_contig126.2849.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 63.2 bits (152), Expect = 2.560e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:  173 TQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWL 292
            +Q KYEEAEPLY+R+L+IRE  LGPDHP VA +LNNLA L
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 63.2 bits (152), Expect = 6.790e-8
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:  173 TQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWL 292
            +Q KYEEAEPLY+R+L+IRE  LGPDHP VA +LNNLA L
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: U9W4Q0_9CYAN (Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W4Q0_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 9.040e-8
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:  176 QAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWLLQ 298
            Q +YEEAEPLY+RSL IRE  LGP HP V  SLNNLA L Q
Sbjct:    2 QGRYEEAEPLYQRSLGIREEQLGPQHPDVVTSLNNLAGLYQ 42
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-7
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 2 
Query:    2 NLAGLLRAQVG*NVLNLSCGEISFGRHIEFPHEN*IGLVGPRRCGTSLVLTHCLSRCTQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWLLQLQ 304
            NLAGLL  Q+  +V+  S        H    HE    ++G R+   +           Q KYEEAEPL+RRSL I E   GPDHP VA  L+NLA LL+ Q
Sbjct:  115 NLAGLLETQIMTSVVRQS--------HSVNSHEPSTDVLGLRQPDVA-----------QGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLESQ 196
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: UPI001AF79F07 (tetratricopeptide repeat protein n=1 Tax=Nitrosospira sp. NRS527 TaxID=155925 RepID=UPI001AF79F07)

HSP 1 Score: 57.0 bits (136), Expect = 8.470e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  173 TQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWL 292
            TQ +Y +AEPLY+RSL+I E TLG DHP VA SLNNLA L
Sbjct:    6 TQGQYTKAEPLYQRSLKIWEKTLGADHPDVATSLNNLATL 45
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-6
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:  152 THCLSRCTQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWL 292
            TH +    Q KYEEA PLY RSL IRE  LGPDHP VAQSLNN A L
Sbjct:  790 THHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: D6U731_9CHLR (TPR repeat-containing protein n=1 Tax=Ktedonobacter racemifer DSM 44963 TaxID=485913 RepID=D6U731_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 2.470e-6
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 2 
Query:  176 QAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLA 286
            +A+Y EAEPLY+R+L+IRE  +GPDHP VAQSLNNLA
Sbjct:  483 RARYREAEPLYQRALQIREQQVGPDHPDVAQSLNNLA 519
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: A0A521T376_9CHLR (Toll/interleukin-1 receptor domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A521T376_9CHLR)

HSP 1 Score: 59.3 bits (142), Expect = 4.770e-6
Identity = 34/55 (61.82%), Postives = 35/55 (63.64%), Query Frame = 2 
Query:  137 TSLVLTHCLSRC-TQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWLLQ 298
            TS +L H  S   T A Y  A PLY RSL IREA LGPDHP  A  LNNLA LLQ
Sbjct:  561 TSALLAHLGSHLKTVAAYAAARPLYERSLAIREAALGPDHPHTATGLNNLAILLQ 615
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.360e-6
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  176 QAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWLLQLQ 304
            Q KY+EA  LY RSL IRE  LGPDHP VAQSLNN A LL+ Q
Sbjct:  831 QGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLESQ 873
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BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.390e-6
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 2 
Query:  158 CLSRCTQAKYEEAEPLYRRSLRIREATLGPDHPQVAQSLNNLAWLLQL 301
            CLS   Q KY+EAEPLY+RSL I E   GPDHP VA +LNN   LL +
Sbjct:  345 CLSFMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLSI 392
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig126.2849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0013D295282.560e-972.50tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI0013D05A066.790e-872.50tetratricopeptide repeat-containing protein n=1 Ta... [more]
U9W4Q0_9CYAN9.040e-870.73Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyng... [more]
D7G180_ECTSI1.070e-742.57TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001AF79F078.470e-770.00tetratricopeptide repeat protein n=1 Tax=Nitrososp... [more]
A0A6H5JJK0_9PHAE1.230e-668.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D6U731_9CHLR2.470e-672.97TPR repeat-containing protein n=1 Tax=Ktedonobacte... [more]
A0A521T376_9CHLR4.770e-661.82Toll/interleukin-1 receptor domain-containing prot... [more]
A0A6H5K4D0_9PHAE5.360e-669.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE5.390e-660.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig126contigS-ischiensis_contig126:1937..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size972
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig126.2849.1prot_S-ischiensis_contig126.2849.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig126 4369..4818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.916567-UTR-S-ischiensis_contig126:1936..20381622815669.916567-UTR-S-ischiensis_contig126:1936..2038Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 1937..2038 +
1695739841.002925-UTR-S-ischiensis_contig126:1936..20381695739841.002925-UTR-S-ischiensis_contig126:1936..2038Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 1937..2038 +
1622815669.9303346-UTR-S-ischiensis_contig126:2086..22881622815669.9303346-UTR-S-ischiensis_contig126:2086..2288Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 2087..2288 +
1695739841.012886-UTR-S-ischiensis_contig126:2086..22881695739841.012886-UTR-S-ischiensis_contig126:2086..2288Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 2087..2288 +
1622815669.9406023-UTR-S-ischiensis_contig126:2813..29191622815669.9406023-UTR-S-ischiensis_contig126:2813..2919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 2814..2919 +
1695739841.025324-UTR-S-ischiensis_contig126:2813..29191695739841.025324-UTR-S-ischiensis_contig126:2813..2919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 2814..2919 +
1622815669.9521766-UTR-S-ischiensis_contig126:3000..31571622815669.9521766-UTR-S-ischiensis_contig126:3000..3157Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 3001..3157 +
1695739841.0353167-UTR-S-ischiensis_contig126:3000..31571695739841.0353167-UTR-S-ischiensis_contig126:3000..3157Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 3001..3157 +
1622815669.9639885-UTR-S-ischiensis_contig126:3718..38531622815669.9639885-UTR-S-ischiensis_contig126:3718..3853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 3719..3853 +
1695739841.0474346-UTR-S-ischiensis_contig126:3718..38531695739841.0474346-UTR-S-ischiensis_contig126:3718..3853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 3719..3853 +
1622815669.9831839-UTR-S-ischiensis_contig126:4350..43681622815669.9831839-UTR-S-ischiensis_contig126:4350..4368Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 4351..4368 +
1695739841.0595105-UTR-S-ischiensis_contig126:4350..43681695739841.0595105-UTR-S-ischiensis_contig126:4350..4368Schizocladia ischiensis KU_0333UTRS-ischiensis_contig126 4351..4368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.0008702-CDS-S-ischiensis_contig126:4368..44761622815670.0008702-CDS-S-ischiensis_contig126:4368..4476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 4369..4476 +
1695739841.0671394-CDS-S-ischiensis_contig126:4368..44761695739841.0671394-CDS-S-ischiensis_contig126:4368..4476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 4369..4476 +
1622815670.0117116-CDS-S-ischiensis_contig126:4674..48181622815670.0117116-CDS-S-ischiensis_contig126:4674..4818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 4675..4818 +
1695739841.0749464-CDS-S-ischiensis_contig126:4674..48181695739841.0749464-CDS-S-ischiensis_contig126:4674..4818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 4675..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig126.2849.1

>prot_S-ischiensis_contig126.2849.1 ID=prot_S-ischiensis_contig126.2849.1|Name=mRNA_S-ischiensis_contig126.2849.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
MPLYQRALKISEEVLGPDHPTVATRLNSLAGLLRAQAKYEEAEPLYRRSL
RIREATLGPDLPDVAQSLNNLALLLKQQVKKLF*
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mRNA from alignment at S-ischiensis_contig126:1937..4818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig126.2849.1 ID=mRNA_S-ischiensis_contig126.2849.1|Name=mRNA_S-ischiensis_contig126.2849.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2882bp|location=Sequence derived from alignment at S-ischiensis_contig126:1937..4818+ (Schizocladia ischiensis KU_0333)
CAACCTGGCGGGGTTGCTGAGGGCCCAGGTGGGATGAAATGTTCTAAATT
TGTCTTGTGGGGAAATTTCTTTTGGCAGGCATATTGAGTTTCCACATGAG
AACGTGAACCTTGGCGGAGTTGCTGAGGGCCCAGGTGGGAGAAAATTGTT
CTAAATTGGCCTTGTTGGGCCACGCAGATGTGGCACATCCTTGGTCCTCA
CCCATTGCCTCTCTCGATGTACCCAGGCCAAGTACGAGGAGGCAGAGCCG
CTCTACCGCCGTTCTCTCAGGATTCGGGAGGCCACGCTGGGTCCTGACCA
CCCACAAGTGGCCCAATCGCTCAACAACCTGGCCTGGTTGTTGCAGCTGC
AGGTGAAGAAATTGTTCTAAATTTGTCTTGTGAGGAAATTTCTTGTGGTG
GGTTTATGGATTTTGTACGTGAGAACAAGAAGTGCAGTTTTCTGGAATAT
TCCTGTGGCTGTGACGTTGAAGCTCAACAACCTGGCGGGGTTGTTGGAGG
ACCAGGTGGGAAGAAATTGTTCTAAATTTGTCTTGTGGGGAAATTTCTTT
CGGCAGGTTTCTTGAGTGATATATGAGAACTAGAACCTCACTTTCCTAGA
ACATTCCCGTGGATGTAGTGTTGGGTCTCAACAACCTGGCGGGGTTGTTG
AGCGCCCAGGTGGTCTAAATTTTTTTTGTTGAGGCCCAGTGAGGGCATTG
ACCACGCAGGCCTGGCATCATGGTCATTTCAGCCTTAGAGTCCTCCGTGA
GGGGCTACTTGTACCATGTGTAGTCTCTAGCTCTCAACAACCTGGTGAGA
ATTGTTCTAAATACGTGTTGTTGAGCGTCATTGCCTGGCTAAGCAGTTTT
CTCATGAGCTTTCCTCTCCGTATGCAGGGCAAGTATGAGGAGGCAATGCC
TCTGCGACTGCGCTGCATCGAAATTGGGGAGAAGGTGCTCGGGCCTGAGC
ACCCAGATCTGGCCGTGTGGCTCAACAACCTGGCGGAGTTGCTGAGGGCC
CAGGTGGGAGAAAATTGTTCTAAATTGGCGTTGTTGGGCCACGCAGATGT
GGCACATCCTTGGTCCTCACCCATTGCCTCTCTCGATGTACCCAGGCCAA
GTACGAGGAGGCAGAGCCGCTCTACAGCCGTTCTCTCAGGATTTGGGAGG
CCACGCTGGGTCCTGACCACCCACAATGTCCTGACCACCCGGCCACATGG
CTCAGGTTGTACAGCAACCAGGTGAGTGACACATTCTAAAATTCTGTTGT
TGAGGCCCAGCGTGGGACTGGGCCAGGCAGACCTGGCATGACATGTGCTT
CAGCCCATATGTATCCTGTGGAACAGGACTTGGCTGTCATGTGTCATCCT
AGCTCTCAGCAACCTGGCGGGGTTGCTGAGGGCCCAGGTGGGATGAAATG
TTCTAAATTTGTCTTGTGGGGAAATTTCTTTTGGCAGGCATATTGAGTTT
CCACATGAGAACGTGAACCTTGGCGGAGTTGCTGAGGGCCGAGGTGGGAG
AAAATTGTTCTAAATTGGCGTTGTTGGGCCACGCAGATGTGGCACATCCT
TGGTCCTCAGCCATTGCCTCTCTCGATGTACCCAGGCCAAGTACGAGGAG
GCAGAGCCGCTCTACCGCAGTTCTCTCAGGATTCGGGAGGCCACGCTGGG
TCCTGACCACCCGGATGTGGCCCAATCGCTCAACAACCTGGCGGGAGAAA
ATTGTTCTAAATTGGCGTTGTTGGGCCACGCAGATGTGGCACATCCTTGG
TCCTCACCCATTGCCTCTCTCGATGTGCACAGGCCAAGTACGAGGAGGCA
GAGCCGCTCTACGCCGTTCTCCGCCGTTCTCTCAGGGTTCGGGAGGCCAC
GCCGGGTCCTGACCACCCGGATGTGGCCCGAGCGCTCAACAACCTGGCGG
GGTTGCTGAGGTCCCAGGTGGGATGAAATGTTCTAAATTTGTCTTGTGGG
GAAATTTCTTTTGGCAGGCATATTGAGTTTCCAAATGAGAACGTGAACCT
CACTTTCCTAGAATAATCCTGTGGCACTGCAACCCTGACAGGGCAAGCTG
GACGAAGCCAAGCCCCTGTATGAGAGGGCTGTGGGTATCTGGGAGACAGC
ACTGGGGCCTGAGCACCCACAAGTGGCCACAGGGCTCAACAACCTGGCCT
CGTTATTGAGCATAACAAGTGATCTGACTCCCTTTTTCTTTTGCTGCCCT
CTTCCCCATATGACATAGGGCAAGTACGATGAGGCGGAGCCCTTGTACAG
GCGGTCTCTTGAGATCATTGAGAGAGTGTACGGCCCTGACCACCCGGATG
TGGCTACACACCTCAACAACCTGGCCTCGTTGTTGAGCCCTCCACCCGGA
ATCTGACGTCGTTGTTGAGCCCTCCACCCGGAATCTGACTCTCTTTACGT
GCACGATGATGCAGGCCAAGTACGAGGAGGCCATGCCCCTCTATCAGAGG
GCCCTGAAGATCTCAGAGGAGGTGCTTGGCCCGGACCACCCAACCGTGGC
CACAAGGCTCAACAGCCTGGCGGGGTTGCTGAGGGCCCAGGTGGGATGAA
ATGTTCTAAATTTGTCTTGTGGGGAAATTTCTTTTGGCAGGCATATTGAG
TTTCCACATGAGAACGTGAACCTTGGCGGAGTTGCTGAGGGCCGAGGTGG
GAGAAAATTGTTCTAAATTGGCGTTGTTGGGCCACGCAGATGTGGCACAT
CCTTGGTCCTCACCCATTGCCTCTCTCGATGTACCCAGGCCAAGTACGAG
GAAGCAGAGCCGCTCTACCGCCGTTCTCTCAGGATTCGGGAGGCCACGCT
GGGTCCTGACCTCCCGGATGTGGCCCAATCGCTCAACAACTTGGCCTTGT
TGTTGAAGCAGCAGGTGAAGAAATTGTTCTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig126:1937..4818+

>mRNA_S-ischiensis_contig126.2849.1 ID=mRNA_S-ischiensis_contig126.2849.1|Name=mRNA_S-ischiensis_contig126.2849.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig126:1937..4818+ (Schizocladia ischiensis KU_0333)
ATGCCCCTCTATCAGAGGGCCCTGAAGATCTCAGAGGAGGTGCTTGGCCC
GGACCACCCAACCGTGGCCACAAGGCTCAACAGCCTGGCGGGGTTGCTGA
GGGCCCAGATGCCCCTCTATCAGAGGGCCCTGAAGATCTCAGAGGAGGTG
CTTGGCCCGGACCACCCAACCGTGGCCACAAGGCTCAACAGCCTGGCGGG
GTTGCTGAGGGCCCAGGCCAAGTACGAGGAAGCAGAGCCGCTCTACCGCC
GTTCTCTCAGGATTCGGGAGGCCACGCTGGGTCCTGACCTCCCGGATGTG
GCCCAATCGCTCAACAACTTGGCCTTGTTGTTGAAGCAGCAGGTGAAGAA
ATTGTTCTAAGCCAAGTACGAGGAAGCAGAGCCGCTCTACCGCCGTTCTC
TCAGGATTCGGGAGGCCACGCTGGGTCCTGACCTCCCGGATGTGGCCCAA
TCGCTCAACAACTTGGCCTTGTTGTTGAAGCAGCAGGTGAAGAAATTGTT
CTAA
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