mRNA_S-ischiensis_contig122.2815.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig122.2815.1
Unique NamemRNA_S-ischiensis_contig122.2815.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A7S6UA29_9STRA (Nad11 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA29_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.590e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT
Sbjct:   68 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 143
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A2E9XNX1_9RICK (NADH-quinone oxidoreductase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E9XNX1_9RICK)

HSP 1 Score: 139 bits (349), Expect = 1.180e-36
Identity = 62/76 (81.58%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            NM+IFT+TPLVKKAREA++EFLL+NHPLDCPICDQGGECDLQD+++ +GSDRSRFY QKRSVEDK+ GP+IKTIMT
Sbjct:   23 NMEIFTDTPLVKKAREAIIEFLLINHPLDCPICDQGGECDLQDQAMAYGSDRSRFYEQKRSVEDKECGPIIKTIMT 98
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A140ECJ4_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECJ4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.670e-36
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            NM+++TN+PLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQD+++ + SDRSRFY  KRSVEDK LGP +KTIMT
Sbjct:   72 NMKVYTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYDFKRSVEDKNLGPFVKTIMT 147
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A519M255_FLASP (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519M255_FLASP)

HSP 1 Score: 130 bits (327), Expect = 1.960e-36
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            NM I+TNTPLV+KAREAVLEFLL+NHPLDCPICDQ GECDLQDE+L++ SDR RF+  KRSVEDK+ GP+IKTIMT
Sbjct:   71 NMVIYTNTPLVRKAREAVLEFLLINHPLDCPICDQAGECDLQDETLQYASDRGRFFEFKRSVEDKECGPIIKTIMT 146
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A140ECJ5_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140ECJ5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.530e-36
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            +M++FTN+PLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQD+++ FGSDRSRFY  KR VED   GP +KTIMT
Sbjct:   73 DMKVFTNSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMNFGSDRSRFYQFKRGVEDHNYGPFVKTIMT 148
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: W7UBW7_9STRA (Nadh dehydrogenase subunit 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBW7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.290e-35
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            +M++FTN+PLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQD+++ + SDRSRFY  KR VEDK LGP IKTIMT
Sbjct:   72 DMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMT 147
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A140ECJ3_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECJ3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.450e-35
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            +M+++T++PLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQD+++ +GSDRSRFY  KR VEDK LGP IKTIMT
Sbjct:   75 DMKVYTDSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMIYGSDRSRFYEPKRGVEDKNLGPFIKTIMT 150
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A7S3EKM8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKM8_9RHOD)

HSP 1 Score: 127 bits (320), Expect = 2.010e-35
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 2 
Query:    5 MQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            M+I T+TP VKKARE VLEFLL+NHPLDCPICDQGGECDLQD+++ FGSDR RFY  KRSVEDK  GPLIKTIMT
Sbjct:   93 MEIMTDTPKVKKAREGVLEFLLVNHPLDCPICDQGGECDLQDQAMVFGSDRGRFYEYKRSVEDKYCGPLIKTIMT 167
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BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: A0A2A4SSF2_9DELT (NADH dehydrogenase (Quinone) subunit G n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A2A4SSF2_9DELT)

HSP 1 Score: 129 bits (324), Expect = 3.410e-35
Identity = 56/75 (74.67%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:    5 MQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            M+++T+TP+VKKARE +LEFLL+NHPLDCPICDQGGECDLQD+SL FGSDRSRF+++K + +DK LGPLIKTIM+
Sbjct:   70 MRVYTDTPMVKKARENILEFLLINHPLDCPICDQGGECDLQDQSLAFGSDRSRFFYKKHTTQDKNLGPLIKTIMS 144
[Close]
BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Match: D2Z1Z2_9STRA (NADH dehydrogenase subunit 11 n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z1Z2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 6.120e-35
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 2 
Query:    2 NMQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSDRSRFYFQKRSVEDKQLGPLIKTIMT 229
            NM+IFT+TPLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ++ + +GSDRSRFY +KRSVEDK  GPLIKTIMT
Sbjct:   68 NMKIFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEKKRSVEDKNCGPLIKTIMT 143
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig122.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA29_9STRA2.590e-47100.00Nad11 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
A0A2E9XNX1_9RICK1.180e-3681.58NADH-quinone oxidoreductase n=1 Tax=Rickettsiales ... [more]
A0A140ECJ4_9STRA1.670e-3680.26NADH dehydrogenase subunit 11 n=1 Tax=Monodopsis s... [more]
A0A519M255_FLASP1.960e-3678.952Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A140ECJ5_9STRA8.530e-3677.63NADH dehydrogenase subunit 11 n=1 Tax=Trachydiscus... [more]
W7UBW7_9STRA1.290e-3580.26Nadh dehydrogenase subunit 11 n=2 Tax=Monodopsidac... [more]
A0A140ECJ3_9STRA1.450e-3577.63NADH dehydrogenase subunit 11 n=1 Tax=Vischeria sp... [more]
A0A7S3EKM8_9RHOD2.010e-3580.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2A4SSF2_9DELT3.410e-3574.67NADH dehydrogenase (Quinone) subunit G n=1 Tax=SAR... [more]
D2Z1Z2_9STRA6.120e-3582.89NADH dehydrogenase subunit 11 n=1 Tax=Chattonella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig122contigS-ischiensis_contig122:14556..14784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score127.1
Seed ortholog evalue3.5e-27
Seed eggNOG ortholog248742.XP_005645100.1
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006950,GO:0006979,GO:0008137,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009853,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0048037,GO:0050136,GO:0050896,GO:0051536,GO:0051540,GO:0055114,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.Belongs to the complex I 75 kDa subunit family
EggNOG OGs34HG0@3041,37RAU@33090,COG1034@1,KOG2282@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.5483055-UTR-S-ischiensis_contig122:14555..145591622815667.5483055-UTR-S-ischiensis_contig122:14555..14559Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 14556..14559 +
1695739839.5189927-UTR-S-ischiensis_contig122:14555..145591695739839.5189927-UTR-S-ischiensis_contig122:14555..14559Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 14556..14559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.5613587-CDS-S-ischiensis_contig122:14559..147841622815667.5613587-CDS-S-ischiensis_contig122:14559..14784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 14560..14784 +
1695739839.5313811-CDS-S-ischiensis_contig122:14559..147841695739839.5313811-CDS-S-ischiensis_contig122:14559..14784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 14560..14784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig122.2815.1prot_S-ischiensis_contig122.2815.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig122 14560..14784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig122.2815.1

>prot_S-ischiensis_contig122.2815.1 ID=prot_S-ischiensis_contig122.2815.1|Name=mRNA_S-ischiensis_contig122.2815.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
MQIFTNTPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDESLEFGSD
RSRFYFQKRSVEDKQLGPLIKTIMT
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mRNA from alignment at S-ischiensis_contig122:14556..14784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig122.2815.1 ID=mRNA_S-ischiensis_contig122.2815.1|Name=mRNA_S-ischiensis_contig122.2815.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=229bp|location=Sequence derived from alignment at S-ischiensis_contig122:14556..14784+ (Schizocladia ischiensis KU_0333)
CAATATGCAAATTTTTACAAACACCCCTTTGGTGAAAAAAGCCCGAGAGG
CTGTTTTGGAATTTCTTCTTTTGAATCATCCCTTGGATTGTCCTATATGT
GATCAAGGAGGAGAATGTGATTTACAAGATGAAAGCTTAGAGTTTGGATC
TGACCGAAGCCGATTTTACTTTCAAAAACGTAGTGTAGAGGATAAGCAAT
TAGGACCCTTAATCAAGACCATAATGACT
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Coding sequence (CDS) from alignment at S-ischiensis_contig122:14556..14784+

>mRNA_S-ischiensis_contig122.2815.1 ID=mRNA_S-ischiensis_contig122.2815.1|Name=mRNA_S-ischiensis_contig122.2815.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig122:14556..14784+ (Schizocladia ischiensis KU_0333)
ATGCAAATTTTTACAAACACCCCTTTGGTGAAAAAAGCCCGAGAGGCTGT
TTTGGAATTTCTTCTTTTGAATCATCCCTTGGATTGTCCTATATGTGATC
AAGGAGGAGAATGTGATTTACAAGATGAAAGCTTAGAGTTTGGATCTGAC
CGAAGCCGATTTTACTTTCAAAAACGTAGTGTAGAGGATAAGCAATTAGG
ACCCTTAATCAAGACCATAATGACTATGCAAATTTTTACAAACACCCCTT
TGGTGAAAAAAGCCCGAGAGGCTGTTTTGGAATTTCTTCTTTTGAATCAT
CCCTTGGATTGTCCTATATGTGATCAAGGAGGAGAATGTGATTTACAAGA
TGAAAGCTTAGAGTTTGGATCTGACCGAAGCCGATTTTACTTTCAAAAAC
GTAGTGTAGAGGATAAGCAATTAGGACCCTTAATCAAGACCATAATGACT
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