mRNA_S-ischiensis_contig12.2789.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig12.2789.1 vs. uniprot
Match: D7FV95_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV95_ECTSI) HSP 1 Score: 158 bits (400), Expect = 5.190e-39 Identity = 103/300 (34.33%), Postives = 163/300 (54.33%), Query Frame = 3
Query: 696 RDALERLWESGGEDEDAESPVPRDSEDAATEAVGAVRSALLEGKRGMIVDIDLVEFDDRDEKYDEDCLIYFVAELAKGLS-FAGNVKMLFKNTRLASAANSWVQLREMQRGPQGMSALRKLGFGSFFPDDDGTAFQYRSMDSYEHAADAVESCIDDDDAVLVVVGPRIIGEMLVTRRVVDLAKGRPVLVVNPRMRQMPAEMIKFSTVYTIFPIQVWHAKRNPKVKVD---LLRLDRNLKHVTSEMDQLLPRVVSKRVFPDPWKLYVDADGRGLKEVQTYDRKPTASTVCRAAQRVIDKVQ 1583
R AL L E G + E+P P S+ A EA A + ALL GKRG+I+D+++ + DD ++DE+ I F +++K L+ +G VK+L + LA A +Q + +G+ R + F SF + +SM + ++++ V ++V PR + ++ V R ++ +AKGRPV+++ PRM MP E F TVY + V NPK ++ L RL +N + + SE+ Q++PRV+ R FP +KLY+D DG+G + +TYD KP + V AQ I +VQ
Sbjct: 53 RQALPEL-EGEGPETKRENPFPTSSDRGALEASSASQQALLAGKRGLIIDVEVRQMDDTHAEFDEEMQIDFATDISKALATVSGRVKVLLRGIHLAEKATEMLQKANTKGEEEGIEPRRDISFCSFQMANTDDEDDEKSMRDFASTL----GLANEEERVFLMVCPRRLVDVTVLREIILVAKGRPVVLITPRMPYMPVETDGFETVYQLKQYNVQPVPTNPKKRIKNVRLTRLGQNQQTIYSELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDAKPQPAVVSFTAQNKIREVQ 347 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2789.1 >prot_S-ischiensis_contig12.2789.1 ID=prot_S-ischiensis_contig12.2789.1|Name=mRNA_S-ischiensis_contig12.2789.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=573bp MRAIVLIALTTCVAAAGRQWNSCFAHHPGRWTSHPRISNAENRVLSRESPback to top mRNA from alignment at S-ischiensis_contig12:3326372..3337008- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig12.2789.1 ID=mRNA_S-ischiensis_contig12.2789.1|Name=mRNA_S-ischiensis_contig12.2789.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10637bp|location=Sequence derived from alignment at S-ischiensis_contig12:3326372..3337008- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig12:3326372..3337008- >mRNA_S-ischiensis_contig12.2789.1 ID=mRNA_S-ischiensis_contig12.2789.1|Name=mRNA_S-ischiensis_contig12.2789.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3438bp|location=Sequence derived from alignment at S-ischiensis_contig12:3326372..3337008- (Schizocladia ischiensis KU_0333)back to top |