mRNA_S-ischiensis_contig12.2756.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2756.1
Unique NamemRNA_S-ischiensis_contig12.2756.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3004464..3004954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size492
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.7341118-UTR-S-ischiensis_contig12:3004463..30045971622815639.7341118-UTR-S-ischiensis_contig12:3004463..3004597Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3004464..3004597 +
1695739820.3100517-UTR-S-ischiensis_contig12:3004463..30045971695739820.3100517-UTR-S-ischiensis_contig12:3004463..3004597Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3004464..3004597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.7447276-CDS-S-ischiensis_contig12:3004597..30049541622815639.7447276-CDS-S-ischiensis_contig12:3004597..3004954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3004598..3004954 +
1695739820.319608-CDS-S-ischiensis_contig12:3004597..30049541695739820.319608-CDS-S-ischiensis_contig12:3004597..3004954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3004598..3004954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2756.1prot_S-ischiensis_contig12.2756.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3004598..3004954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2756.1

>prot_S-ischiensis_contig12.2756.1 ID=prot_S-ischiensis_contig12.2756.1|Name=mRNA_S-ischiensis_contig12.2756.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
MFITTHMASCPLTQALYRSLHHTQSGSISSSLHYTSGIPTALYFCHCQHW
PQASLPLLTALINHETRYNIMRWRSLRAWTTKYSEVPTTVVLLHSSAVHT
WPQHSTITSKLPAGQAEPS
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mRNA from alignment at S-ischiensis_contig12:3004464..3004954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2756.1 ID=mRNA_S-ischiensis_contig12.2756.1|Name=mRNA_S-ischiensis_contig12.2756.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=491bp|location=Sequence derived from alignment at S-ischiensis_contig12:3004464..3004954+ (Schizocladia ischiensis KU_0333)
CTGCAAAGCATAGAGTGTACTGGCAAGTAACCTCCCAGACACAGACAATG
GCACGCTAATTAAACTAGACGCACTTGGCGGAGACTGCGGCAGTAGGGTC
GATATTGTCAGAAATCAGAACGTCTGCATCCGTGATGTTCATAACGACAC
ACATGGCCTCTTGTCCCCTCACACAAGCTCTTTACAGATCCTTGCATCAC
ACTCAGTCTGGGAGCATCTCTAGCTCCCTTCATTACACCTCAGGTATTCC
TACTGCACTGTACTTCTGCCATTGTCAGCACTGGCCCCAGGCATCACTGC
CTCTCCTAACGGCGCTAATTAACCATGAGACAAGGTACAATATAATGCGC
TGGCGCTCTCTGAGGGCTTGGACAACCAAGTACTCCGAAGTACCTACTAC
GGTAGTACTACTACATAGTAGTGCAGTGCATACCTGGCCGCAGCACTCCA
CAATCACATCGAAACTGCCAGCGGGGCAAGCGGAGCCCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3004464..3004954+

>mRNA_S-ischiensis_contig12.2756.1 ID=mRNA_S-ischiensis_contig12.2756.1|Name=mRNA_S-ischiensis_contig12.2756.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig12:3004464..3004954+ (Schizocladia ischiensis KU_0333)
ATGTTCATAACGACACACATGGCCTCTTGTCCCCTCACACAAGCTCTTTA
CAGATCCTTGCATCACACTCAGTCTGGGAGCATCTCTAGCTCCCTTCATT
ACACCTCAGGTATTCCTACTGCACTGTACTTCTGCCATTGTCAGCACTGG
CCCCAGGCATCACTGCCTCTCCTAACGGCGCTAATTAACCATGAGACAAG
GTACAATATAATGCGCTGGCGCTCTCTGAGGGCTTGGACAACCAAGTACT
CCGAAGTACCTACTACGGTAGTACTACTACATAGTAGTGCAGTGCATACC
TGGCCGCAGCACTCCACAATCACATCGAAACTGCCAGCGGGGCAAGCGGA
GCCCTCCATGTTCATAACGACACACATGGCCTCTTGTCCCCTCACACAAG
CTCTTTACAGATCCTTGCATCACACTCAGTCTGGGAGCATCTCTAGCTCC
CTTCATTACACCTCAGGTATTCCTACTGCACTGTACTTCTGCCATTGTCA
GCACTGGCCCCAGGCATCACTGCCTCTCCTAACGGCGCTAATTAACCATG
AGACAAGGTACAATATAATGCGCTGGCGCTCTCTGAGGGCTTGGACAACC
AAGTACTCCGAAGTACCTACTACGGTAGTACTACTACATAGTAGTGCAGT
GCATACCTGGCCGCAGCACTCCACAATCACATCGAAACTGCCAGCGGGGC
AAGCGGAGCCCTCC
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