mRNA_S-ischiensis_contig12.2734.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2734.1
Unique NamemRNA_S-ischiensis_contig12.2734.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.350e-30
Identity = 70/128 (54.69%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPPGHRPSLPST 399
            Q L+L++N L  ++GLPW  L SLETLDL +NRL  LGD+                    LRRL LENN I+ VP ELGLCT LESL L+GNPQR + P+LL RGT ATL +LR RLPP HRP  P T
Sbjct:  528 QTLVLAYNPLSDVSGLPWAALGSLETLDLSNNRLRCLGDVVLMTW---------------LRRLNLENNDISPVPLELGLCTGLESLLLAGNPQRQISPSLLQRGTVATLAYLRDRLPPDHRPRTPIT 640
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.400e-29
Identity = 68/128 (53.12%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPPGHRPSLPST 399
            Q L+L++N L  ++GLPW  L SLE LDL +NRL  LGD+                    LRRL LENN I+ VP ELGLCT LESL L+GNPQR + P+LL RGT ATL +LR RLPP +RP  P T
Sbjct:  442 QTLVLAYNPLSDVSGLPWAALGSLENLDLSNNRLRSLGDVVLMTW---------------LRRLNLENNDISPVPLELGLCTGLESLLLAGNPQRQISPSLLQRGTVATLAYLRDRLPPDYRPRTPMT 554
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A5D6XXC4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXC4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.920e-17
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPP 372
            + LLLSFN +ES+ G PW  L S   + + DNRL  LG +  A                RL  L  ENN +A VP ELGLC  L ++ ++GNPQ+ +R AL+ +G+A  L +L+ + PP
Sbjct:  527 ETLLLSFNRIESLDGFPWGELASASVVSISDNRLRSLGTIYLAP---------------RLASLSFENNNLAQVPCELGLCPHLRAVYVNGNPQKTVRGALIVKGSAEILAYLKNKCPP 630
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: T0QQ18_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QQ18_SAPDV)

HSP 1 Score: 87.8 bits (216), Expect = 4.820e-17
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:   22 LLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPPGHRPSLPSTAETSA 414
            LLLSFN L ++AG+PW+ + +L  +   DN+LTDLG +  A                 L  L +ENN++ ++P ELGLC +L++L +SGNPQR +R A + +GT   + +L+ +L P     + +T + +A
Sbjct:  523 LLLSFNRLSTLAGMPWRLMKALSIVSASDNKLTDLGTIFEAPT---------------LSSLSVENNSLQAIPAELGLCPKLKALYISGNPQRTVRIATVNKGTDEIMSYLKNKLLPEEIAQILATRDCNA 638
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A2D4C1Q2_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1Q2_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 2.480e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPPG 375
            + LLL+FN +E++ G PW +L     + L DNRL  LG +  A                 L  L  ENN + SVP ELGLC  L ++ ++GNPQ+ +R A++A+G+A  L +L+ +LP G
Sbjct: 1386 ETLLLAFNKVETLDGFPWHKLQRTSVISLSDNRLRSLGQVYLAPM---------------LASLAFENNNLVSVPCELGLCPHLRAIYMNGNPQKTVRGAVIAKGSAEILMYLKNKLPLG 1490
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A662Y2S4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2S4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.430e-15
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPPGHRPSLPS 396
            + LLL FN +E++   PW  L  L  + + DN+L  LG +  A                 L  L  ENN +A VP ELGLC  L ++ ++GNPQR +R  ++A+G+A  L +L+ +LPP    S PS
Sbjct:  484 ETLLLGFNKMETLERFPWSHLAKLSLVSISDNKLRSLGRIYDAPM---------------LASLSFENNNLAKVPCELGLCPHLRAIYMNGNPQRTVRGGVIAKGSAEILAYLKNKLPPSAVLSPPS 595
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A7S4IZQ0_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZQ0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.480e-15
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 1 
Query:   10 RQQVLLLSFNGLESIA-----------GLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRL 366
            R   L+LS N ++S++           GLP     SLE LDL DN+++DLGDLP                  +LR L L NN + S+PP LGL   L+S+ L GNPQR +R A+L R   A L +LR RL
Sbjct:  667 RLSTLILSHNRIQSLSRSNGGNSGWCPGLP-----SLENLDLSDNQISDLGDLPTVLSGCCT----------KLRSLMLSNNELKSIPPTLGLVRTLQSIDLRGNPQRSIRTAVLDRSCGAILSYLRSRL 781
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A6G0PK55_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PK55_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.700e-14
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:   16 QVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLPP 372
            + LL+++N +E++   PW +L  +  + + DN+L  LG +  +                 L  L  ENN +A VP ELGLC  L ++ ++GNPQR +R A++A+G+A  L +L+ +LPP
Sbjct:  538 ETLLVAYNRIETLDRFPWSQLAKVSVISVSDNKLRSLGRIYDSPL---------------LASLSFENNNLAKVPCELGLCPHLRAIYMNGNPQRTVRGAVIAKGSAEILAYLKNKLPP 641
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: UPI00052EDBF9 (leucine-rich repeat-containing protein 40-like n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EDBF9)

HSP 1 Score: 75.9 bits (185), Expect = 4.340e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:   10 RQQVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAXXXXXXXXXXXXXGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLP 369
            R QV+ LSFN  +   G+ + RL +LET+ L +N++  +  L                 + +L  L L+NN +  VPPELG C  L +L L GNP R  R A+LA+GTAA LE+LR R+P
Sbjct:   71 RLQVINLSFNRFKVFPGVLY-RLLALETILLSNNQVGSIDALRLQK-------------MDKLGTLDLQNNDLLQVPPELGNCDTLRTLLLEGNPFRTPRAAVLAKGTAAVLEYLRSRIP 176
[Close]
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Match: A0A5J4NJE1_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NJE1_9TREM)

HSP 1 Score: 70.9 bits (172), Expect = 3.650e-13
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:  193 RLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQRMLRPALLARGTAATLEFLRGRLP 369
            RL  L L +N I S+P ELGLCT L+SLQLSGN  R+ RPA++A+GT+A LE+LR RLP
Sbjct:   22 RLVHLDLADNDIDSLPAELGLCTHLKSLQLSGNTFRIPRPAVVAKGTSAILEYLRSRLP 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI7_ECTSI8.350e-3054.69Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KJH4_9PHAE6.400e-2953.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XXC4_9STRA1.920e-1740.34Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T0QQ18_SAPDV4.820e-1736.64Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4C1Q2_PYTIN2.480e-1638.33Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A662Y2S4_9STRA1.430e-1537.01Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S4IZQ0_9STRA1.480e-1540.77Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6G0PK55_9STRA1.700e-1434.45Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
UPI00052EDBF94.340e-1440.83leucine-rich repeat-containing protein 40-like n=1... [more]
A0A5J4NJE1_9TREM3.650e-1362.71Uncharacterized protein n=1 Tax=Paragonimus wester... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2629420..2633495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog2880.D8LFI7
EggNOG free text desc.Leucine-rich repeats, outliers
EggNOG OGsCOG4886@1,KOG0472@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002035.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size516
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2734.1prot_S-ischiensis_contig12.2734.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2629421..2633495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.7948818-CDS-S-ischiensis_contig12:2629420..26295601622815659.7948818-CDS-S-ischiensis_contig12:2629420..2629560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2629421..2629560 -
1695739834.0184848-CDS-S-ischiensis_contig12:2629420..26295601695739834.0184848-CDS-S-ischiensis_contig12:2629420..2629560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2629421..2629560 -
1622815659.8076842-CDS-S-ischiensis_contig12:2631022..26311331622815659.8076842-CDS-S-ischiensis_contig12:2631022..2631133Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2631023..2631133 -
1695739834.0317147-CDS-S-ischiensis_contig12:2631022..26311331695739834.0317147-CDS-S-ischiensis_contig12:2631022..2631133Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2631023..2631133 -
1622815659.8186653-CDS-S-ischiensis_contig12:2633233..26334951622815659.8186653-CDS-S-ischiensis_contig12:2633233..2633495Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2633234..2633495 -
1695739834.0442748-CDS-S-ischiensis_contig12:2633233..26334951695739834.0442748-CDS-S-ischiensis_contig12:2633233..2633495Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2633234..2633495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2734.1

>prot_S-ischiensis_contig12.2734.1 ID=prot_S-ischiensis_contig12.2734.1|Name=mRNA_S-ischiensis_contig12.2734.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=171bp
LTFRQQVLLLSFNGLESIAGLPWQRLFSLETLDLGDNRLTDLGDLPAAAA
AAAAASASGQAGLGRLRRLCLENNAIASVPPELGLCTRLESLQLSGNPQR
MLRPALLARGTAATLEFLRGRLPPGHRPSLPSTAETSAAATAPPPPPPPT
TAQPLERLARAGGPGPTAAAG
back to top

mRNA from alignment at S-ischiensis_contig12:2629420..2633495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2734.1 ID=mRNA_S-ischiensis_contig12.2734.1|Name=mRNA_S-ischiensis_contig12.2734.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4076bp|location=Sequence derived from alignment at S-ischiensis_contig12:2629420..2633495- (Schizocladia ischiensis KU_0333)
CTGACCTTCCGCCAGCAGGTCCTCCTCCTCTCCTTCAACGGCCTCGAGAG
CATCGCGGGGCTGCCGTGGCAACGCCTCTTTTCCCTGGAGACCCTCGACC
TAGGGGACAACAGGCTCACAGACCTTGGTGACCTGCCTGCAGCCGCCGCC
GCCGCCGCTGCGGCGTCCGCATCTGGGCAGGCGGGGCTGGGTCGCCTGCG
GCGCCTGTGCTTGGAAAACAACGCCATCGCCAGCGTGCCGCCGGAGCTGG
GGCTGTGCACAAGTGAGTTGAACCCTTTTACCCCTGAGGTCCGTATAGTC
ATAGGGTTTTAGTGTGCAAGTCCAATTAAGCAGGGGTGAAAGGGTTAAGG
TAAGCGAGTTTAACCCTTTTACCCCTGAGGTCCATATACTCATAGGGTTT
TAGCGTGTAGGTCCAATTTAGCAGGGGTAAAAGGGTTAAGGTACACTCCT
CCCTCCCTGCTTCCTTCCCTCTCTACCCCTGAGGTCCGTACGATCATAGG
GTTTTAGCAATGAAGTCCAATTTAACAGGGGTACAAGGGTTAACGAAGGC
CAGCTGTGTCACCAGTGTGAGTCTTTAACCCGTTTACCCCTGAGGTGCGT
ATACTCATAGGGTTTTAGTGTGCAAGCCCAACCAAGCAGGGGTAAAAGGG
TGAAGGGAAGAGAGTTTAACCCTTTTACCCCTGAGGTCCATATACTCATA
GAGTTTTAGTGTGTAAGTCCAATTTATTGGGGGTAAAAGAGTTAACGTAC
ACTCCTCCCTCCCTCCCTGCTTCCATCCCATAGGGTTTTAGTGTGTAGGT
CCAATTTAGCAGGGGTAAAGGGGTTAAGGTATACCCCTCCCTCCCTGCTT
CCTTCCCGCCCTCCCTCTGTACTGACATTCGTCCGCCCCTTCCTCCCTCG
TCCCCTCTCTGCCCCTCTCCTTCTCTTTTTTTGAAAGTCCATGCTTGGAA
GTACGAGTGCACCATTAGTGCAGTAAGCACAGTAACCCTGTGCGTGTACA
GTACAGTACACCAGTGCTGGAGAGTGATGGTGCTTTGATTCGAGAATACG
CAAGCAAAGTCCGGGCCACGTCCCTGAATAGGGGCCCCACCAGCGGCCCT
GCTTTCGCATAACAACGAGGGGCGGCGCGGCCGTATGCCTCTACCCTTTT
ACCCCTGCTAAATTGGACTTACTCGCTGAAACCCTATGGTTATATGGACT
CCAGGAGTAAAAGGGTTAAGATGGCCCTCTGGTTGTTCAAGCCAGGTGAG
GGTGTGTGAATGGTGTGATGTGATGTGATGTCAAACTGCACCGGATGTCA
TGTGAAGTGCACTCTAATGCAAGTGCACTTTTGACACAGCGTCCCATCCC
ATCACGCCACAGTTTGTAAGTAGTGTGTGTGAAGATACCAACTCTGGTAG
TCACTCTGATACACCGCAGTTTGACTTCGCATCACATCACACCATTGTTT
GTACATAGTGTGTGTGTGTGTGAAGGTACCACTTTGGTACCTCACACCAA
GTGAGGTTTTGTTTTATTCATACAGTATAGTCGTGATCGCCTGGCCGACG
AGAAGCCGGCATGCTCCGTCCCGGCGGAGCAGGGACGGACGCGAGGCCAA
TGGCCGAAAGGCTACCCTGCGGGGGCTGGCCTACGGTCCAGCAAGTGGTA
TACTGGGCCGACGGTCGGTGGCATGCACAGGACGGGATGTCCCGTTTCCA
ACATGAGTACACACACACACAGTAGTGCACTGCCCTTATTTACAGCCCCC
CGGCCGCCCCCCCTTTTTTGCCTCATTTTGTCTGCCCTGCAAGCGAAAGA
AGGGCTTCTCAAGCGGTCCCGACTATTGCCCTTGGGACGGCGCCCGCAAG
TCGCTCGTGTACTTTCAACAACACGTGCGATCCGACGTGATGTGATGTCA
AACTACTAGAGTGATGTTTCGTCAGCTGTGCCCTTAAACGCCATCGTTCG
ACACCATATCGCATCGCCCGGCCCGTGGATGGTTCACTCTACAGTGCGGC
ACTACTACCACGTACTGTAGTATATATATGTGTGTACTCACGTTATGCTT
GCCGTAGTCTCGAGACCATTGACAACGTGCCTCGGTCGAGACGGAGCAGA
CGTAGTAAAGTGCTCGTACTAATTTTGCGGTTCAACCTCCCCTCACGGGC
ATCTCGGCCTACCGCAACCAGTGATGGAATATCTAAGAAAATCAACCTAT
TTATCGACAGCACTGATCTAGACTCTATATATCTATCGATGGTCGATATT
CGATAGTTTGACACACACTAAATCCAAGTAGATAGTAGCGCCACCCACAC
AATCAGTTGAGCCCAATAACTATCTACAGTACTTATCGATATTCCATCAC
TGTGTATGACAGGGCTGGAGTCCCTCCAGCTGTCCGGAAACCCCCAGCGG
ATGCTGAGGCCCGCCCTCCTTGCGCGAGGCACGGCTGCCACCCTTGAGTT
TCTGCGTGGACGCCTGCCCCCCGGTGAGTGCTTGCTCTGGGGTACATGTG
CTTACCTGTGCTCTGAGCAAGTGTGCCTACTGAATATATCTACTTCGAAG
TATGAAGTGCAATGTACTCGTACTCTACTCGTATGTATTTGTATAGTATA
TGGAGAAGTATATACTTACGAAGTACTCGTGTATATATATGTATGTATAT
ATCCTGCTCCGTCTCGATCGAGGCGCGTGGTCGGTGGTCTCGGGACTACG
GCAAGCACACTGCGCGTACATATGTACTTCGAAGTATATACTTTTATATA
CTCAGTCTGACAGGGTTGTTATTTCCCCGTGTCCTGTGCATGTCACCAGT
GGGCCCAGCACACTCCGCCGGACCAGCGATGTGATGTGATACTATGTGAT
GTGATGTGATGTGATGTCAAACCACGGCACATTAGAGCACACATCACATC
AAATCCCAGGACACTCCGTGCTGGACAGTACTTACCACCGATCAGCCCCC
GCAGGGTGCAGGGCAGCCTTTCGGCCATGGGCCTCGTATCCCTACTACGC
CGGTACGGAGCATGACGGGTTTTCACCGGCCAGACGTGGGGTTGCACACC
AATCCCGGCTTGCTGCTGGGGCACGCGGGCACCCTGCACACGCCGGTTGG
CTGGTCATGAGTCGGGAAGCGGTATCTGTGTTTTTTTCTTGTTCTTCGAA
GTACCTGCTGTGTCGATCGTGGCGCGTGGCCATTGGTCTCGAGACTACGG
CAAGCACAACGTGGGTACCATATATATACTTGGAAGTAGATCGTGTACTT
CTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGATCTCGGGACACTATAC
TACTTCCGGAAGTATCTATGTACTCAAGTTGTCGTGCCATAATCATGTTT
ACCTACATACTTCAAGTATTGCAGTAGCGGCGCTTCCAAGTATGCCTTTT
ATCGTGCGCCCGGTGAGCGCCCACGAGCACACGCGCTTGTACCTGTACTC
TTTGAGTAAATTGCCTCAACTATGCAGCAGCAACTACTTCGAAGTACTTG
GGCGCAGTGAGTTGAGTGCACGTGCTTGCACCTGTACATCCAAGCTCTCG
AAGCGGAGCGCTCCACTTCATCTACAAGCAGCAAAGCGCCCCTTGCCATG
CCGTGGTACTGCGAAATCCTCTAGTACTGGACTGCGCATCGCAGCCAACG
CACCCGAGGACTTCAGTGATGGAATGTCTAGACAGATCAACCTATTTATC
GACAGTAGTGATCTATTTGTCTATCGATATTCGATAGTTTGACCCACACT
AAATCCAAGTACTCGAAGTCGTTTTTAGCCTGAAGATAAAACCGAGTGGA
AAAGAGGAGGTGTTCCCACTTATGCGAGTTCAGGGCCCCCTTTAGCAACG
CCACCCACAAGATCAGTCGAGCCCGATAGCCATCTATCGATCGACATTCC
ATCACTGGAGGACTGCCCCTTCCCTTCTCCGCCAGGTCATCGCCCCTCAC
TGCCCAGCACGGCGGAGACTTCAGCGGCGGCGACGGCACCGCCCCCGCCG
CCGCCGCCAACCACCGCACAGCCGCTGGAACGACTAGCGCGAGCTGGCGG
GCCTGGTCCCACTGCGGCGGCAGGGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:2629420..2633495-

>mRNA_S-ischiensis_contig12.2734.1 ID=mRNA_S-ischiensis_contig12.2734.1|Name=mRNA_S-ischiensis_contig12.2734.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1026bp|location=Sequence derived from alignment at S-ischiensis_contig12:2629420..2633495- (Schizocladia ischiensis KU_0333)
CTGACCTTCCGCCAGCAGGTCCTCCTCCTCTCCTTCAACGGCCTCGAGAG
CATCGCGGGGCTGCCGTGGCAACGCCTCTTTTCCCTGGAGACCCTCGACC
TAGGGGACAACAGGCTCACAGACCTTGGTGACCTGCCTGCAGCCGCCGCC
GCCGCCGCTGCGGCGTCCGCATCTGGGCAGGCGGGGCTGGGTCGCCTGCG
GCGCCTGTGCTTGGAAAACAACGCCATCGCCAGCGTGCCGCCGGAGCTGG
GGCTGTGCACAACTGACCTTCCGCCAGCAGGTCCTCCTCCTCTCCTTCAA
CGGCCTCGAGAGCATCGCGGGGCTGCCGTGGCAACGCCTCTTTTCCCTGG
AGACCCTCGACCTAGGGGACAACAGGCTCACAGACCTTGGTGACCTGCCT
GCAGCCGCCGCCGCCGCCGCTGCGGCGTCCGCATCTGGGCAGGCGGGGCT
GGGTCGCCTGCGGCGCCTGTGCTTGGAAAACAACGCCATCGCCAGCGTGC
CGCCGGAGCTGGGGCTGTGCACAAGGCTGGAGTCCCTCCAGCTGTCCGGA
AACCCCCAGCGGATGCTGAGGCCCGCCCTCCTTGCGCGAGGCACGGCTGC
CACCCTTGAGTTTCTGCGTGGACGCCTGCCCCCCGGGCTGGAGTCCCTCC
AGCTGTCCGGAAACCCCCAGCGGATGCTGAGGCCCGCCCTCCTTGCGCGA
GGCACGGCTGCCACCCTTGAGTTTCTGCGTGGACGCCTGCCCCCCGGTCA
TCGCCCCTCACTGCCCAGCACGGCGGAGACTTCAGCGGCGGCGACGGCAC
CGCCCCCGCCGCCGCCGCCAACCACCGCACAGCCGCTGGAACGACTAGCG
CGAGCTGGCGGGCCTGGTCCCACTGCGGCGGCAGGGGTCATCGCCCCTCA
CTGCCCAGCACGGCGGAGACTTCAGCGGCGGCGACGGCACCGCCCCCGCC
GCCGCCGCCAACCACCGCACAGCCGCTGGAACGACTAGCGCGAGCTGGCG
GGCCTGGTCCCACTGCGGCGGCAGGG
back to top