mRNA_S-ischiensis_contig12.2594.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2594.1
Unique NamemRNA_S-ischiensis_contig12.2594.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2594.1 vs. uniprot
Match: A0A6H5JUP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.010e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  169 CREDGCTTRAHFGEEGEKATYCSAHKR--EGMVDVTSARCQAAGCTKAASFGHE 324
            C E+ C  R  FG  G K  YC+ H R  EGMVDV+S RC+A GC K   +G+E
Sbjct:   27 CVEEPCRRRPFFGPPGGKPMYCAPHARNKEGMVDVSSRRCEAVGCAKWPLYGNE 80
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BLAST of mRNA_S-ischiensis_contig12.2594.1 vs. uniprot
Match: A0A6C0HSH3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HSH3_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 7.000e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:  166 ICREDGCTTRAHFGEEGEKATYCSAHKREGMVDVTSARC 282
            +C+E GC  R  F  EGEKA+YC  HK+EGM+DV    C
Sbjct:    1 MCKETGCNKRPSFNYEGEKASYCKDHKKEGMIDVAHKLC 39
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUP5_9PHAE7.010e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6C0HSH3_9ZZZZ7.000e-553.85Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1108909..1109548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size641
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.5319643-CDS-S-ischiensis_contig12:1108908..11093161622815638.5319643-CDS-S-ischiensis_contig12:1108908..1109316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1108909..1109316 +
1695739819.8531942-CDS-S-ischiensis_contig12:1108908..11093161695739819.8531942-CDS-S-ischiensis_contig12:1108908..1109316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1108909..1109316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.5446215-UTR-S-ischiensis_contig12:1109316..11095481622815638.5446215-UTR-S-ischiensis_contig12:1109316..1109548Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1109317..1109548 +
1695739819.8634489-UTR-S-ischiensis_contig12:1109316..11095481695739819.8634489-UTR-S-ischiensis_contig12:1109316..1109548Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1109317..1109548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2594.1prot_S-ischiensis_contig12.2594.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1108909..1109316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2594.1

>prot_S-ischiensis_contig12.2594.1 ID=prot_S-ischiensis_contig12.2594.1|Name=mRNA_S-ischiensis_contig12.2594.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
RGPGTSEISTLGSGSSQTVRATAGGEAARVGVAEARGRRGAPSGPNKKKH
SLHRVICREDGCTTRAHFGEEGEKATYCSAHKREGMVDVTSARCQAAGCT
KAASFGHEADRRRMFCGSHRMPGMVNVAKLHRTRR*
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mRNA from alignment at S-ischiensis_contig12:1108909..1109548+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2594.1 ID=mRNA_S-ischiensis_contig12.2594.1|Name=mRNA_S-ischiensis_contig12.2594.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=640bp|location=Sequence derived from alignment at S-ischiensis_contig12:1108909..1109548+ (Schizocladia ischiensis KU_0333)
CGGGGTCCCGGGACGAGCGAGATATCCACCTTAGGCAGCGGCTCGTCGCA
AACGGTGAGGGCCACCGCGGGGGGCGAAGCAGCCCGGGTGGGTGTGGCGG
AAGCTCGAGGTCGTCGCGGAGCGCCCTCGGGGCCGAACAAGAAGAAGCAT
TCGCTTCATCGTGTCATATGCCGAGAGGATGGGTGCACTACTCGGGCGCA
TTTCGGCGAGGAGGGGGAGAAGGCGACGTACTGCAGCGCCCACAAGCGAG
AGGGGATGGTGGATGTCACGAGCGCGCGTTGCCAGGCGGCGGGGTGCACG
AAGGCGGCGTCGTTTGGACACGAGGCCGACCGCCGCAGGATGTTTTGCGG
GAGCCACCGGATGCCAGGTATGGTAAACGTAGCGAAGCTTCACCGTACTA
GGCGATGATGCCAAAATCGAGCGTTTCTCTGTCTCCGTGCCCCAGGTGAT
AGCTCCAGTGTCCTAGGCAATTGCTTTGATACAGTCGGGAGCCAACCGGC
CCGGTTGCTCAAGTACGTGTTTCTAGTTTTAGTCCAGCGACAACAGCGGC
ACTCTTTGGCTAATGCCTTCCTTAATGCAACGAATGCTATACAGACTCGG
CGGCAGATTCTACAGCACACGTGCTTGCATTCGTTGCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:1108909..1109548+

>mRNA_S-ischiensis_contig12.2594.1 ID=mRNA_S-ischiensis_contig12.2594.1|Name=mRNA_S-ischiensis_contig12.2594.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig12:1108909..1109548+ (Schizocladia ischiensis KU_0333)
CGGGGTCCCGGGACGAGCGAGATATCCACCTTAGGCAGCGGCTCGTCGCA
AACGGTGAGGGCCACCGCGGGGGGCGAAGCAGCCCGGGTGGGTGTGGCGG
AAGCTCGAGGTCGTCGCGGAGCGCCCTCGGGGCCGAACAAGAAGAAGCAT
TCGCTTCATCGTGTCATATGCCGAGAGGATGGGTGCACTACTCGGGCGCA
TTTCGGCGAGGAGGGGGAGAAGGCGACGTACTGCAGCGCCCACAAGCGAG
AGGGGATGGTGGATGTCACGAGCGCGCGTTGCCAGGCGGCGGGGTGCACG
AAGGCGGCGTCGTTTGGACACGAGGCCGACCGCCGCAGGATGTTTTGCGG
GAGCCACCGGATGCCAGGTATGGTAAACGTAGCGAAGCTTCACCGTACTA
GGCGATGACGGGGTCCCGGGACGAGCGAGATATCCACCTTAGGCAGCGGC
TCGTCGCAAACGGTGAGGGCCACCGCGGGGGGCGAAGCAGCCCGGGTGGG
TGTGGCGGAAGCTCGAGGTCGTCGCGGAGCGCCCTCGGGGCCGAACAAGA
AGAAGCATTCGCTTCATCGTGTCATATGCCGAGAGGATGGGTGCACTACT
CGGGCGCATTTCGGCGAGGAGGGGGAGAAGGCGACGTACTGCAGCGCCCA
CAAGCGAGAGGGGATGGTGGATGTCACGAGCGCGCGTTGCCAGGCGGCGG
GGTGCACGAAGGCGGCGTCGTTTGGACACGAGGCCGACCGCCGCAGGATG
TTTTGCGGGAGCCACCGGATGCCAGGTATGGTAAACGTAGCGAAGCTTCA
CCGTACTAGGCGATGA
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