mRNA_S-ischiensis_contig12.2588.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2588.1
Unique NamemRNA_S-ischiensis_contig12.2588.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Match: D7G573_ECTSI (GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G573_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.650e-18
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 QSMWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDTSHQRAFEEMDLDNDGEVTFDEFVRWY 219
            Q MW  LSR  +L YLG EG+A+VK+A   L AY+ALREHPL     + Q+AF EMD ++DGEV+FDEFVRWY
Sbjct:  133 QQMWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWY 205
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BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Match: A0A6H5KQY7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.900e-17
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 QSMWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDTSHQRAFEEMDLDNDGEVTFDEFVRWY 219
            Q MW  LSR  +L YLG EG+A+VK+A   L AY+ALREHPL     + Q+AF EMD + DGEV+FDEFVRWY
Sbjct:  206 QQMWATLSRGHQLEYLGNEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNRDGEVSFDEFVRWY 278
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BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Match: A0A835YJV9_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.210e-16
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    4 SMWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDTSHQRAFEEMDLDNDGEVTFDEFVRWYD 222
            +MW EL + G L YLG EGQARVKRA   L A AALREHP      S ++ F EMD D++GEVTF+EFVRWY+
Sbjct:  118 AMWRELRKGGALEYLGSEGQARVKRAMIVLAAMAALREHPRRDGVLSPKKIFAEMDFDSNGEVTFEEFVRWYE 190
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BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Match: A0A7S4DFJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFJ0_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 7.280e-11
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 QSMWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDTSHQ--RAFEEMDLDNDGEVTFDEFVRWY 219
            + MW+EL+ +G+L YL    QA +K+A   + A+++L EHP +   TS    +A++E D + DG++TF+EF RWY
Sbjct:  122 KDMWEELTSEGELDYLSEAEQALIKKALAVITAFSSLNEHPAYTYGTSRNPFQAYQEADANGDGDLTFEEFDRWY 196
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BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Match: A0A4D9D784_9STRA (EF-hand domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D784_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.860e-6
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 MWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDT-SHQRAFEEMDLDNDGEVTFDEFVRWYDQTFPRQ 240
            +W E+ R  ++AYL  E + RVK+    L  +  L +HP    +T S +  F++ D++ DG+++F+EF+RWY  ++  Q
Sbjct:  177 VWYEIQRGDRMAYLRAEERERVKQQLVVLAFFRTLFDHPSQVLNTQSAEACFQQADVNRDGQLSFEEFLRWYTASYDDQ 255
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G573_ECTSI5.650e-1860.27GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KQY7_9PHAE1.900e-1760.27EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YJV9_9STRA2.210e-1660.27EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4DFJ0_HETAK7.280e-1141.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D784_9STRA6.860e-634.18EF-hand domain-containing protein n=2 Tax=Monodops... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1036074..1038051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue7.2e-16
Seed eggNOG ortholog2880.D7G573
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
EggNOG free text desc.HD domain containing 3
EggNOG OGsCOG0317@1,KOG1157@2759
EC2.7.6.5
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2588.1prot_S-ischiensis_contig12.2588.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1036074..1038045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.0503762-CDS-S-ischiensis_contig12:1036073..10366941622815633.0503762-CDS-S-ischiensis_contig12:1036073..1036694Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1036074..1036694 -
1695739816.935273-CDS-S-ischiensis_contig12:1036073..10366941695739816.935273-CDS-S-ischiensis_contig12:1036073..1036694Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1036074..1036694 -
1622815633.0662656-CDS-S-ischiensis_contig12:1037898..10380451622815633.0662656-CDS-S-ischiensis_contig12:1037898..1038045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1037899..1038045 -
1695739816.9480903-CDS-S-ischiensis_contig12:1037898..10380451695739816.9480903-CDS-S-ischiensis_contig12:1037898..1038045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1037899..1038045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.0834253-UTR-S-ischiensis_contig12:1038045..10380511622815633.0834253-UTR-S-ischiensis_contig12:1038045..1038051Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1038046..1038051 -
1695739816.9577537-UTR-S-ischiensis_contig12:1038045..10380511695739816.9577537-UTR-S-ischiensis_contig12:1038045..1038051Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1038046..1038051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2588.1

>prot_S-ischiensis_contig12.2588.1 ID=prot_S-ischiensis_contig12.2588.1|Name=mRNA_S-ischiensis_contig12.2588.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=256bp
MWDELSRDGKLAYLGVEGQARVKRAFGALVAYAALREHPLHRSDTSHQRA
FEEMDLDNDGEVTFDEFVRWYDQTFPRQHRGGGGGSALVRPLHHGKPSSV
VGQQRPPHGEQQPAPRTPTTVAAAAAAEEEHGIKGPASVEVDSFTAGSYG
SETAAFSPAGAAGTAGLVPPGGSWPVILTPDAIIPPGSGTRAGPVGTGPV
GTGPAGTGHGGGRQQQPQQQLPRRRPMTPEEQEELRERWLAGGHVTAISL
VDGGAG
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mRNA from alignment at S-ischiensis_contig12:1036074..1038051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2588.1 ID=mRNA_S-ischiensis_contig12.2588.1|Name=mRNA_S-ischiensis_contig12.2588.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1978bp|location=Sequence derived from alignment at S-ischiensis_contig12:1036074..1038051- (Schizocladia ischiensis KU_0333)
CAGTCCATGTGGGACGAGCTGAGCCGGGACGGGAAGCTGGCGTACCTGGG
CGTGGAGGGGCAAGCCCGCGTGAAGCGTGCCTTCGGGGCGCTGGTGGCGT
ACGCCGCCCTGCGGGAGCACCCGCTGCACCGGTCAGACACCAGCCACCAG
CGGGTGAGATGATACTTTTGGCCCTGGGCGGTATATATGTACTCATGTGC
TGCTTGCCGTAGTCCCGAGACCTGCGCAGTATATATGTATATATACTCAT
GTGCTGCTTGCCGTAGTCGCGAGACCATTCACCAGCGCTGTACGTAGTGT
GAAGCTTTGCGGCAGTGCGACTCGACATTACAGTAGGTCGATTGTAGGCT
CAGAGGAGGGGAGCACCTTGTGTTACAGTGCATTGCATGGTACTGTTCGT
TTGGGATAGACTCGAGTACTTCGGAGCAGTTACGACGAGTTTTGGTAGAT
ATGCGGAGGCGTTTTGTAGCCGCGGTTCAAGCTGTACGAAGGTACACGCC
GTCCAAGGTGTGCATGCAGTCCGTAAAGATAATGATCACTCTCCTGGAGA
CCACACCCTGCTGGGAGGCGCATGCAGCGCTGATGGGCGGTGCCGTGGTG
CACGACGCCCTAGTGCTTGATACATAGTACTTCCAGCAAGTGCATCCTTC
GAAGTCTGTGCTGTTCTCTGTACAGTCGGAGCCACCGGTAAGTTCCGAAA
AACCTTAGATTTTGACGTGCTGGCCTTCAGCTTGAGAGTTGTTCTGAAGG
CTGAGGTACAAGGTTTTGACGTGGTACCTTCGGATGAAGCGACCAATTAT
TCATTGAGCTGAACAAAGCGTTTGGAAAGAGCATACTCAGTTGTGTCTTT
TAAAGGCCAAAGGAACTAACTAGTACCACCCACCGTAGTACCTGCATGCT
GTACGAGTACTGTACTGTACTTCATTGTACCGTAGTGTGTACTCACATTC
GGACAAGGTTTCTTGTTTCTGCTCATGCCCTGGACCCGAACGATCCTCGG
CTTTGCTCCTCGCGGGGATCGCTGGCCAGCTGTAGCTTTCGCCATTGGCT
TATATTGCGTTGTATTTTGCTCCACTACTGTACGTGCTCGATTATGTGTT
CCCCCTCTCCCCTGGAAGGGGTTTGAGGAGATGGACCTGGAAAACGACGG
GGAGGTCACTTGTACTGTACTGTATTGGTCACTTGTACTGTACTGTATTC
TACTATAGTGTACTGTAGTAGGTGCAATTACGACTGAATCCCCCCCCCCC
CCTTCCCCTGGAAGTTGTTTGAGGAGATGGACCTGGACAACGACGGCGAG
ATCACATTCACCGAGCTAATTACGCCTGAACCCCGAAAAAAATAAAAAAA
TGTCAAGGCCTTTGAAGAGATGGACCTGGACAACGACGGGGAGGTGACCT
TCGACGAGTTTGTGCGCTGGTATGACCAGACCTTCCCACGCCAGCACCGC
GGCGGCGGCGGCGGCAGCGCCCTCGTCCGCCCACTCCACCACGGCAAACC
CTCCTCCGTCGTAGGGCAACAACGCCCCCCGCACGGCGAGCAGCAGCCTG
CCCCCCGCACGCCCACGACGGTAGCGGCGGCGGCGGCGGCGGAGGAAGAG
CACGGGATCAAGGGGCCCGCCAGCGTGGAGGTTGACAGTTTCACCGCCGG
CAGTTACGGCAGTGAAACCGCCGCCTTCAGCCCCGCCGGCGCGGCGGGCA
CTGCAGGCCTCGTGCCCCCCGGGGGCTCCTGGCCGGTCATCCTCACCCCG
GATGCTATCATCCCTCCCGGCTCAGGGACCAGGGCCGGCCCTGTCGGGAC
CGGCCCTGTGGGGACCGGCCCTGCTGGGACCGGGCACGGGGGGGGGCGGC
AGCAGCAGCCGCAGCAGCAGCTGCCGCGCCGGCGGCCGATGACCCCGGAG
GAGCAGGAGGAGTTACGGGAGAGGTGGCTGGCGGGGGGTCACGTCACGGC
CATCAGCTTGGTTGATGGCGGCGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:1036074..1038051-

>mRNA_S-ischiensis_contig12.2588.1 ID=mRNA_S-ischiensis_contig12.2588.1|Name=mRNA_S-ischiensis_contig12.2588.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1536bp|location=Sequence derived from alignment at S-ischiensis_contig12:1036074..1038051- (Schizocladia ischiensis KU_0333)
ATGTGGGACGAGCTGAGCCGGGACGGGAAGCTGGCGTACCTGGGCGTGGA
GGGGCAAGCCCGCGTGAAGCGTGCCTTCGGGGCGCTGGTGGCGTACGCCG
CCCTGCGGGAGCACCCGCTGCACCGGTCAGACACCAGCCACCAGCGGATG
TGGGACGAGCTGAGCCGGGACGGGAAGCTGGCGTACCTGGGCGTGGAGGG
GCAAGCCCGCGTGAAGCGTGCCTTCGGGGCGCTGGTGGCGTACGCCGCCC
TGCGGGAGCACCCGCTGCACCGGTCAGACACCAGCCACCAGCGGGCCTTT
GAAGAGATGGACCTGGACAACGACGGGGAGGTGACCTTCGACGAGTTTGT
GCGCTGGTATGACCAGACCTTCCCACGCCAGCACCGCGGCGGCGGCGGCG
GCAGCGCCCTCGTCCGCCCACTCCACCACGGCAAACCCTCCTCCGTCGTA
GGGCAACAACGCCCCCCGCACGGCGAGCAGCAGCCTGCCCCCCGCACGCC
CACGACGGTAGCGGCGGCGGCGGCGGCGGAGGAAGAGCACGGGATCAAGG
GGCCCGCCAGCGTGGAGGTTGACAGTTTCACCGCCGGCAGTTACGGCAGT
GAAACCGCCGCCTTCAGCCCCGCCGGCGCGGCGGGCACTGCAGGCCTCGT
GCCCCCCGGGGGCTCCTGGCCGGTCATCCTCACCCCGGATGCTATCATCC
CTCCCGGCTCAGGGACCAGGGCCGGCCCTGTCGGGACCGGCCCTGTGGGG
ACCGGCCCTGCTGGGACCGGGCACGGGGGGGGGCGGCAGCAGCAGCCGCA
GCAGCAGCTGCCGCGCCGGCGGCCGATGACCCCGGAGGAGCAGGAGGAGT
TACGGGAGAGGTGGCTGGCGGGGGGTCACGTCACGGCCATCAGCTTGGTT
GATGGCGGCGCGGGGGCCTTTGAAGAGATGGACCTGGACAACGACGGGGA
GGTGACCTTCGACGAGTTTGTGCGCTGGTATGACCAGACCTTCCCACGCC
AGCACCGCGGCGGCGGCGGCGGCAGCGCCCTCGTCCGCCCACTCCACCAC
GGCAAACCCTCCTCCGTCGTAGGGCAACAACGCCCCCCGCACGGCGAGCA
GCAGCCTGCCCCCCGCACGCCCACGACGGTAGCGGCGGCGGCGGCGGCGG
AGGAAGAGCACGGGATCAAGGGGCCCGCCAGCGTGGAGGTTGACAGTTTC
ACCGCCGGCAGTTACGGCAGTGAAACCGCCGCCTTCAGCCCCGCCGGCGC
GGCGGGCACTGCAGGCCTCGTGCCCCCCGGGGGCTCCTGGCCGGTCATCC
TCACCCCGGATGCTATCATCCCTCCCGGCTCAGGGACCAGGGCCGGCCCT
GTCGGGACCGGCCCTGTGGGGACCGGCCCTGCTGGGACCGGGCACGGGGG
GGGGCGGCAGCAGCAGCCGCAGCAGCAGCTGCCGCGCCGGCGGCCGATGA
CCCCGGAGGAGCAGGAGGAGTTACGGGAGAGGTGGCTGGCGGGGGGTCAC
GTCACGGCCATCAGCTTGGTTGATGGCGGCGCGGGG
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