mRNA_S-ischiensis_contig12.2578.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2578.1
Unique NamemRNA_S-ischiensis_contig12.2578.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:922359..928687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size561
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2578.1prot_S-ischiensis_contig12.2578.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 922359..928687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.9087083-CDS-S-ischiensis_contig12:922358..9226081622815632.9087083-CDS-S-ischiensis_contig12:922358..922608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 922359..922608 +
1695739816.8731358-CDS-S-ischiensis_contig12:922358..9226081695739816.8731358-CDS-S-ischiensis_contig12:922358..922608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 922359..922608 +
1622815632.9221187-CDS-S-ischiensis_contig12:922802..9229571622815632.9221187-CDS-S-ischiensis_contig12:922802..922957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 922803..922957 +
1695739816.8827918-CDS-S-ischiensis_contig12:922802..9229571695739816.8827918-CDS-S-ischiensis_contig12:922802..922957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 922803..922957 +
1622815632.9384713-CDS-S-ischiensis_contig12:928531..9286871622815632.9384713-CDS-S-ischiensis_contig12:928531..928687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 928532..928687 +
1695739816.8925967-CDS-S-ischiensis_contig12:928531..9286871695739816.8925967-CDS-S-ischiensis_contig12:928531..928687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 928532..928687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2578.1

>prot_S-ischiensis_contig12.2578.1 ID=prot_S-ischiensis_contig12.2578.1|Name=mRNA_S-ischiensis_contig12.2578.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=187bp
QETLHPDRKRLRGLHSDSGCACRARADRPGGLPLAAIMAEPDGHPERDLR
GEESRGPEQPQGDGVEQGQPEVSERVECVLADVGRVIEQRVTIQRLTEAR
VMVDPQPRDDSAPMPGHHILEVRGPGPASVQRAIQMVKNITGNQTSEPGS
TATTSGTVTSSSPPAPASAAPALAALATSPPPPPPPL
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mRNA from alignment at S-ischiensis_contig12:922359..928687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2578.1 ID=mRNA_S-ischiensis_contig12.2578.1|Name=mRNA_S-ischiensis_contig12.2578.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6329bp|location=Sequence derived from alignment at S-ischiensis_contig12:922359..928687+ (Schizocladia ischiensis KU_0333)
CAAGAGACGCTGCACCCTGACCGGAAGCGGCTGCGAGGCTTGCATTCCGA
CTCCGGATGTGCATGCAGGGCTCGCGCTGACAGGCCTGGGGGACTGCCCC
TCGCAGCCATCATGGCCGAACCTGACGGTCACCCGGAACGGGACCTCCGT
GGAGAGGAATCCCGGGGCCCTGAACAGCCGCAAGGTGACGGAGTGGAGCA
GGGCCAGCCCGAGGTGTCAGAACGCGTGGAGTGTGTGTTGGCCGACGTTG
GTGAGTTGGCACCCTGGGGCGAATACAACTACCTGCATCTCTCTCCCAGT
AAGTGCTGTTGGGGAACAGACCAGTACACGGCAATGCCCCTATGCGCCTC
CCTCGCACAACGACGGCCCCGCGAGCCATTAATCACCCGCGAATGCAGCC
TGGCCTGGCCCATGACTCTTCCGTATTCTGTCCGGTCTCCACAGGCCGGG
TCATCGAGCAGAGGGTCACGATCCAGCGTCTCACCGAGGCGAGGGTGATG
GTCGACCCGCAGCCACGAGACGACAGCGCTCCCATGCCGGGTCATCACAT
CCTGGAGGTTCGAGGCCCTGGCCCAGCGAGCGTGCAGCGGGCCATACAGG
TGTGCGGGCGTGTGGATACTTTTTGTTCTCAATTTGGCGTTCGTCTGCTG
CCGCCGGCCTGCTGCAGCCGGGGCATGACTCGTTTGTTTCACCAGTGGCT
GTAGACCGTCCTGCTGAATTCATCAGCCACGCGGAGCGGTCGGCTCTTTG
GTGTGAGTTAAGTACCCCCTAGTCGCGGTGGTTACAACGTGCCCGTTGGG
CCGGCAGCCCCATCGCGCAATCGTCTCAGTTGGTTGAAGAAAAATTACGA
ACACTTTGACAAACGACGGCGAGCCGCAATTTCGGACTGGTGCCATTTTC
GTTATACCGACCCCGAAAGCGGCTCTTCTTGATAATGAGGAGAGATTTCG
AAGGATGAAATGGCACAACAATGCCATGCCACCCGCCCCCACGCGCGCTC
ACCCATGCCGTGAGTTTGTCCACAATCAAGGGGGCGGTTAAACGCATATA
TGTGATGGCCAACAGATTTATGTCTGGCCTCCGGGGTCGGCGCAAACCCA
ACACTCTCCGCCTGACCCAGTAGCAACATGCTTCGGCCTGTGGCTGAGCG
CTTAGCCTTTCCTGGCGGAGGGAAGCAAACCTGGGAGAAATCGGAGCCGT
TAGCCGTGCACACAAATGGCCGAGTCAGTATACGCCTTCGAGTTCATGAG
TACTACAGTACTCCGTACATGACATGTACTTAACCACGCTGCGATTGCCG
TGGTCCCGAGACCATTGACCACTCGGCATATACTGGCTCTAGACATGTGT
GCTTGGGTAAACATGTACTCATGTGCATATGGCCGTGGTGGTGGGGTGCA
CCCCGAGGCATGCGGTCTATGTCCCGAGGAGTACGGCAAGCGCAACGTGA
GCATATATATATATAATACATACACTTGCTCGTATGTCTGTACTTCGAAG
TATACGTTTTGTAGTGCAGCGGTACTTATACTCGAGTACATTTGTGAAGT
GCTGGCTCATTGTCCTTGGGACGCTCATGCCGCCGCGGCCGGGCCGCGCG
CACCGCGGGCGGCGCGTTGTCTGAAACCCTCCCGAACAGAACAAATACTT
CTCGTCGGGCAAGTCAGAGAGTACAAGTACTGATTCCTTCCGCCGGAAGG
GCGAGAGAGCCAGTCTTCGGCAGTCCTTCAAGAAATGAATTTTGTTCTTT
TTTTTTTTCGGCGGCCCACCCAAAGAATCGATCCAGTTTCGGGCCCAAAG
CCGTCTAATGTGTGCGCCACGGGACGCACCCATGCCCGAGAGCCCCCATT
TGGGCGGACGAGGCCCAAAATGTTCACCCTGCGGGGCCATATTGGGTAAA
TTCGTCACCGTCTGGGCCCGGGCATGTGTCAGGCGCCCGGGCCGCCCATT
TTCTTGCGGGTGGTTGTGAGGCGCTGGTCTTTTTGGGAGGTCACATACAT
GGTGTGGCGTGAGTGTGCAACTGCCTGCCCACAGAACAAAAGAACAAGCG
TGCACTGTACTGTATGAGTCAGTCACTGCACTGTACTTTCCTCGAAGCAG
TAAGTGCATTCGTTCGGAGCGGCGTATTTGTGAAAATGTTTCGTCAGAGC
AGCGGCAGTTGCCTAAGTGGCTGTTACTATCGTCAATATTATTTTTACTA
TTATTATTTTGAGGGGCTTGTTTGTTTCGCGGCGCGGCACCTCTCGGTCT
CATCGACCCCCCTTTTACGTTGCTCGGACAGTCTCGAGCTACTTTCCGAG
AGAGGCAGAGTGGGTGTTTCGCATGCCAAACGACCAGCCGTGGGAAGAAG
CAAAGGAGGCGAAGTGCGAGAGGACGTGGGCGTTCAAGGCACGTGCTGTA
CTGTAGTTGACCCTCGTATTATACAGCGCTTTCCAGCGCTGAAAAATGCT
CCTGTCCTTAGCGTCCGGAGGTCTCCCGGCCGAGCCCCCCGAAGTGCTGC
ACAGTAGTTAGTACAGTGGTAGGGAAAATCTGTGCCCGAGTACCTGCACA
GGCGTCATGGCGGATATACTACGTATAAACGCCTCGTAAGCCGAGCGAGG
CCACTTCAAAGTTAAACGCGCTTGGCGCCTGTCGAGTCTGCGTTTGTTGG
TGTCATGCTGTACGAGTAAGCGTACAATAGTATGTGTTGATCGACATCGC
CTGGTGCGCCGATTGCTCACAACACAGCCGTTCTCTAGTACGGTGCGCGG
CGGTGGCGGCCGAGAAGACGGGTGGAACCGGAGTCCTACCCCCGCCCGCA
AGCCATTTCATGGAAAGCATTGAAAGTTTTGCCCCTACTGGACAGATTTT
GTGTTTCTTTTTCGACGCGCCCGACTTCGTTGGTCGATTTGGTGATGTAC
CTCAAGTATATACTGCTGTACATGGTGTGTAGCAATCAGGTTTGGTTTCA
CTGTCGAGTATCAATCGTCCAACGGTGAGCGACTCGGGAAGAAGCAGTAC
TACTATACCGTACTACCGCTCCTGCTACTGTACAGCACTATTTTGTTTGC
GCACCAACGGTCGCGTCTCTTGCGCTAAGCACGAGTAGGTACTCGAGTAG
TTCTTGTACTTCAAAGTACGAAGTACAATGCAAAGACCGTTCATGGAGTA
GCCACCCCGAAGGCACCCAAAGCGCCGCAATCCGAAAGGCTTGCACAATC
AATCGTGGTCGGCGCACAGCACGCGCCGGTCACTTGCTGAGTCGGGGCCG
CGGCACGGGCTGGTCGCAGCGAACCCATGTGCAGTCGAGAAGGGGGACAG
ACGGGGGACTGTATACACGCAGTTGCTTTGCTTTGCTGGGCGTTGAGGAT
ACCTGGTACTGTAGAGCGCATTTCTTGCCGCCGGTATTCTACAAGGTGCT
GGCCCGACTAGGACCGCTTGCCGTTCTCGATCGAGTAGAGTGCCCGTGTG
TGCGTGTGTGGTGTACCTGGCACACATGGTCTGGCCGGAAGCCCACGAGA
ATGGGAATGTAAAACTGGACCTACTACTGTACAGTAGTCCGTTTTCGCGT
TTCCGGTGCCGAGCTCGAGGGCCTGCCCGGCCAAGTATGGTTTGCTTGTG
CTCCTTTGCGGCTGCCCCAGAGCCAGAAGCACACGGTTCCGAGACGCTTT
TGTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTGTCCTTTTTTCCCGTGCTCTTGCTCTTCCTTGGA
GGGCGACGGCACTTACTGCTTTACTTTCACGATGCCAAAGGCATTCCGGG
CTTGGCCACTGCGCGGCCTGGCCGGTACAAACCCGGCGCGCTCCCTCGCT
GCCTGGTTGGGGTGCGAGTGTATGTTGAAATTGAAATAGCTACTCCTGTC
GGAGGGCAAACAAACCCGACGTTCAACTCCGGGCCGGTGACCAAGCGCAC
AAGGTCATGTCGCTAGACTTTCAAAGGATGAGCACGAACTCTCACTGCTG
CACTTCCAGGAAATAGAGCTCTGCCGTAACTTGCCTCACCCTGCTGTACA
GGCTGTGCACGCCTTCCGGTTGTGAAAAGACGGGCAGAGCCAATGCCGGC
TGTTTTCCGCCCCGGCTATTTCGGGGCAAAACGCTTCTTCACCACGCAGC
AGCCGAAGCACACATGGTGTGCCGCTGCCGGCCGCCGCCGTGCCACACTC
GCGAACCTCGCCACCGCGGCGGCTTTTTGCCCGGTTGCTTATGCGCGGGT
TGGGCTAATATTCACGGCCTGGAGTACGCTTCCCGCGCTCTTACTGTCAC
TCGCTCTACGAGTGCATGTAAGCAGGTGCTTCCAAGCATATATGCTTCCA
TGGAAACGTTTCGCGACTCCATGCTGTTTCGCCGTCTGAACGGCACCTGA
TCAAGGATGCTGGCTACAGCGGCGGCGCGGGCGACGTACGGTTGTGTGTT
TGCGTCGGCGTTCTACTTCACGCGCCTTCTATCTCTCTCTCTCTCTCTCT
CCCTCCCTCCCTCCCTCCCTTCCTCCATCTCAATGACTGCACGAAGCAAC
AGGCTTCCCGTTTCCCCTTGGCTTCTTGCTTCCATTCGCCCCGCGAGTGA
AGGCGAGTGAACGGACGGCTTACCTGTTGTGATTTGATGTGATTTGGAAT
TACAGTGATCCATGGACGACGCCCCGCGTTTATGAGCGCTGGGCCTTCAC
ACGGCCTGGGCGTATACGCCTTCTCATAGAGTACCGCGCAGCCCGACTGC
GGCTGCTGTAGGTGTTGCCGTGCCGGGCACGAGGCAATGGGAAGCACTGT
CAAATGCTCTGTCCCCGCTCCCGGCTTACGTTCGCGTTAAATCAGTCTCA
CACTCAAGCAGTTTGCGTGCATGCGGTGGGGCATGGCATATGACTGTGCA
CTTGCACGTCCGGCATGCCCCGGAGGTCCCGGCCTACCTACTATGCAGTA
GTTGGGATGCAAGAACTATGAAGTACTTAGCTACCGTACTCGTGTCGGAG
GGCAAACCCGAAGTTTAACTTTGGGCTGCCGACTGGGAACGCAAGGTTGT
GTCGCAAGACAAGTCGATGAGTGCATACTTCACTGCACCGTGTCCTGGGT
GGCAACTAAACCTATTACGGGCGTGTACACATGTTGTTCACGGCCGTTTC
GCGGATACGGCCGGCCCCTTTGATAGTTGGCCACGTGCTGATTACTTCGA
AGTAAGATGAAGCCGAGTGCGTCGTGTGTGCGCTGCACATGCAGCCGGCA
TGGAGTGCCCGGCACGTGCAGGTACTGTACACTATATACTGCCAAGCACA
GCATACACTACAGTATATACTGACGATGTGATGGCGGAGAGTAAGGTAGG
TCGCGTGTAAAACATTGAGGGCACGGCTTGTTTTACGCGGACGTGTGCCA
CTTGTGCCATGGGCGGGGAGCTCACTGGCACGCCGCCGTTTGAGAGCTTT
TCTGAGCAGCAGTTGGAATAATGACGGATGCGCACGCCGCCTCGTTTGGG
CTGTAGCCCGAGAGGGTCACGATTGGCGCGCCCTGTGTTTTACCTCGGTC
TCGCACCCGGCCAGGCCGGCGCGCTCATCACTTTCGCGGCAGCACCTTGG
ACACACGAGTACATAGGGTGCTTGCCGGGAGGGCGAAGTGCTGCCTCTCG
CGCTTTGCCAAAGCGGCATCTGTTCTTTGCATCGGTGCACGCCCTGCGGC
AAGCTGCCGGAAGGACTTTTCGCTCAGTCAGTGCTATATATATGTACTCG
AGTATGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACTGTATGAGGAAT
GCATTCGCGTGATCCTGTGCGTGTTCACGAGGTTGTGTGCGCCACTGCAC
TGGTACTAACCTCGCTCGGGCGTCGACTGTAACAGCATGGTACACGAGTG
CTGTACAGTACTGTAGTAGTGATGCATGTGCAACGGCGCAGTTGCGGCCG
CTGGCAACCTCACCCGGTCACCCCTGTCCTGCCTCTCTGTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTTCCTCCCCCCCTCTCCCTCAACCCCCACCC
CACCCCACCCCACCTCACCCCCCTCTCTCTCCCTCTCTGCCTCCCTCCCT
CCCTCTCTCTCTTGGCACCCCAGATGGTAAAAAACATCACGGGCAACCAA
ACTTCAGAGCCGGGCTCCACCGCCACGACCTCTGGTACGGTGACCTCCTC
ATCCCCGCCGGCACCAGCATCGGCTGCGCCAGCACTAGCCGCATTGGCTA
CGTCACCGCCGCCGCCACCACCACCACTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:922359..928687+

>mRNA_S-ischiensis_contig12.2578.1 ID=mRNA_S-ischiensis_contig12.2578.1|Name=mRNA_S-ischiensis_contig12.2578.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1122bp|location=Sequence derived from alignment at S-ischiensis_contig12:922359..928687+ (Schizocladia ischiensis KU_0333)
CAAGAGACGCTGCACCCTGACCGGAAGCGGCTGCGAGGCTTGCATTCCGA
CTCCGGATGTGCATGCAGGGCTCGCGCTGACAGGCCTGGGGGACTGCCCC
TCGCAGCCATCATGGCCGAACCTGACGGTCACCCGGAACGGGACCTCCGT
GGAGAGGAATCCCGGGGCCCTGAACAGCCGCAAGGTGACGGAGTGGAGCA
GGGCCAGCCCGAGGTGTCAGAACGCGTGGAGTGTGTGTTGGCCGACGTTG
CAAGAGACGCTGCACCCTGACCGGAAGCGGCTGCGAGGCTTGCATTCCGA
CTCCGGATGTGCATGCAGGGCTCGCGCTGACAGGCCTGGGGGACTGCCCC
TCGCAGCCATCATGGCCGAACCTGACGGTCACCCGGAACGGGACCTCCGT
GGAGAGGAATCCCGGGGCCCTGAACAGCCGCAAGGTGACGGAGTGGAGCA
GGGCCAGCCCGAGGTGTCAGAACGCGTGGAGTGTGTGTTGGCCGACGTTG
GCCGGGTCATCGAGCAGAGGGTCACGATCCAGCGTCTCACCGAGGCGAGG
GTGATGGTCGACCCGCAGCCACGAGACGACAGCGCTCCCATGCCGGGTCA
TCACATCCTGGAGGTTCGAGGCCCTGGCCCAGCGAGCGTGCAGCGGGCCA
TACAGGCCGGGTCATCGAGCAGAGGGTCACGATCCAGCGTCTCACCGAGG
CGAGGGTGATGGTCGACCCGCAGCCACGAGACGACAGCGCTCCCATGCCG
GGTCATCACATCCTGGAGGTTCGAGGCCCTGGCCCAGCGAGCGTGCAGCG
GGCCATACAGATGGTAAAAAACATCACGGGCAACCAAACTTCAGAGCCGG
GCTCCACCGCCACGACCTCTGGTACGGTGACCTCCTCATCCCCGCCGGCA
CCAGCATCGGCTGCGCCAGCACTAGCCGCATTGGCTACGTCACCGCCGCC
GCCACCACCACCACTAATGGTAAAAAACATCACGGGCAACCAAACTTCAG
AGCCGGGCTCCACCGCCACGACCTCTGGTACGGTGACCTCCTCATCCCCG
CCGGCACCAGCATCGGCTGCGCCAGCACTAGCCGCATTGGCTACGTCACC
GCCGCCGCCACCACCACCACTA
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