mRNA_S-ischiensis_contig12.2566.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2566.1
Unique NamemRNA_S-ischiensis_contig12.2566.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:679394..680035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.2052112-CDS-S-ischiensis_contig12:679393..6799211622815638.2052112-CDS-S-ischiensis_contig12:679393..679921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 679394..679921 +
1695739819.7499921-CDS-S-ischiensis_contig12:679393..6799211695739819.7499921-CDS-S-ischiensis_contig12:679393..679921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 679394..679921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.2228665-UTR-S-ischiensis_contig12:679921..6800351622815638.2228665-UTR-S-ischiensis_contig12:679921..680035Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 679922..680035 +
1695739819.7583606-UTR-S-ischiensis_contig12:679921..6800351695739819.7583606-UTR-S-ischiensis_contig12:679921..680035Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 679922..680035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2566.1prot_S-ischiensis_contig12.2566.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 679394..679921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2566.1

>prot_S-ischiensis_contig12.2566.1 ID=prot_S-ischiensis_contig12.2566.1|Name=mRNA_S-ischiensis_contig12.2566.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
RVQDPIPGAFPFTGLHSQGIQSRKTKKTEEEGSRAHSDSCWKIPGVLVVE
SRARGGALRGGSTPQGRATVTAWHAAPPRLHQRTTPSLRSTLHLRGSAAR
PNHAFVQRSSCCPRSHSCVCEVSPVVRGWRALKGSPQTSARLPSRPSRWN
CGRLCSSRNRICVGRPANQRIDGVW*
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mRNA from alignment at S-ischiensis_contig12:679394..680035+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2566.1 ID=mRNA_S-ischiensis_contig12.2566.1|Name=mRNA_S-ischiensis_contig12.2566.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig12:679394..680035+ (Schizocladia ischiensis KU_0333)
CGAGTTCAGGACCCCATCCCCGGAGCCTTTCCTTTCACTGGCCTTCACTC
GCAGGGCATACAGAGCAGAAAAACGAAGAAAACGGAGGAAGAGGGCTCCC
GGGCCCACTCCGATTCTTGCTGGAAGATTCCCGGTGTCCTCGTGGTTGAA
TCACGAGCCCGCGGCGGTGCTCTCCGAGGCGGCTCGACACCACAAGGACG
AGCGACCGTCACCGCGTGGCACGCTGCACCTCCGAGGCTGCACCAAAGGA
CGACACCGTCACTGCGTAGCACACTGCACCTCCGAGGCTCCGCGGCTCGC
CCAAACCATGCGTTTGTCCAGCGTTCTTCTTGCTGCCCTCGGAGTCACAG
CTGCGTCTGCGAAGTCTCTCCAGTTGTTCGTGGATGGCGTGCCCTCAAGG
GTTCCCCTCAGACTTCTGCGCGGCTACCTTCGAGGCCGAGCCGCTGGAAC
TGTGGAAGGCTCTGTTCGAGTAGGAATCGAATCTGTGTGGGCAGGCCGGC
CAACCAGCGGATAGATGGCGTGTGGTGACACAGCCCGCCCCCAGCCGCCG
CGATCACAACATCCGAGCATACATTTTGCCTGCAGTAGCTAACTAACTAA
CTCATCATGCTCCGGGCCCTGAACGATGGAAGTTTTCACCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:679394..680035+

>mRNA_S-ischiensis_contig12.2566.1 ID=mRNA_S-ischiensis_contig12.2566.1|Name=mRNA_S-ischiensis_contig12.2566.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig12:679394..680035+ (Schizocladia ischiensis KU_0333)
CGAGTTCAGGACCCCATCCCCGGAGCCTTTCCTTTCACTGGCCTTCACTC
GCAGGGCATACAGAGCAGAAAAACGAAGAAAACGGAGGAAGAGGGCTCCC
GGGCCCACTCCGATTCTTGCTGGAAGATTCCCGGTGTCCTCGTGGTTGAA
TCACGAGCCCGCGGCGGTGCTCTCCGAGGCGGCTCGACACCACAAGGACG
AGCGACCGTCACCGCGTGGCACGCTGCACCTCCGAGGCTGCACCAAAGGA
CGACACCGTCACTGCGTAGCACACTGCACCTCCGAGGCTCCGCGGCTCGC
CCAAACCATGCGTTTGTCCAGCGTTCTTCTTGCTGCCCTCGGAGTCACAG
CTGCGTCTGCGAAGTCTCTCCAGTTGTTCGTGGATGGCGTGCCCTCAAGG
GTTCCCCTCAGACTTCTGCGCGGCTACCTTCGAGGCCGAGCCGCTGGAAC
TGTGGAAGGCTCTGTTCGAGTAGGAATCGAATCTGTGTGGGCAGGCCGGC
CAACCAGCGGATAGATGGCGTGTGGTGACGAGTTCAGGACCCCATCCCCG
GAGCCTTTCCTTTCACTGGCCTTCACTCGCAGGGCATACAGAGCAGAAAA
ACGAAGAAAACGGAGGAAGAGGGCTCCCGGGCCCACTCCGATTCTTGCTG
GAAGATTCCCGGTGTCCTCGTGGTTGAATCACGAGCCCGCGGCGGTGCTC
TCCGAGGCGGCTCGACACCACAAGGACGAGCGACCGTCACCGCGTGGCAC
GCTGCACCTCCGAGGCTGCACCAAAGGACGACACCGTCACTGCGTAGCAC
ACTGCACCTCCGAGGCTCCGCGGCTCGCCCAAACCATGCGTTTGTCCAGC
GTTCTTCTTGCTGCCCTCGGAGTCACAGCTGCGTCTGCGAAGTCTCTCCA
GTTGTTCGTGGATGGCGTGCCCTCAAGGGTTCCCCTCAGACTTCTGCGCG
GCTACCTTCGAGGCCGAGCCGCTGGAACTGTGGAAGGCTCTGTTCGAGTA
GGAATCGAATCTGTGTGGGCAGGCCGGCCAACCAGCGGATAGATGGCGTG
TGGTGA
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