mRNA_S-ischiensis_contig116.2483.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2483.1
Unique NamemRNA_S-ischiensis_contig116.2483.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig116.2483.1 vs. uniprot
Match: A0A835Z3L1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.510e-36
Identity = 107/294 (36.39%), Postives = 153/294 (52.04%), Query Frame = 1 
Query:    4 KLDMVWKKYLGQPMTSTDRNFFQEPAHPARPLVIPAQIFAEAIPDKAPADLQSLGDSDEDDDGQALCGSYVGRT--SSESYCNKRFVKIPL-EAADGASAAFEAT-DASYSHPGGYADGKTASDTGSAGAYGRVAQGAVPFNHDAAGSYLVRLHGSAGAELPMTAADTGWLFDPTSGTVTFPD-DLPSSVSTANPPLLSFYAYVG----KTGTTDVHL----PHWWEASNTFSGGATVGTGDDLAALVVDYRDLAALDPDQAGMAIAFGSG-DGSWRIACHWGGGDPEATVFKI 843
            K ++++KK +G P T+ +  F+ EP  PARP V  +Q ++E+IP+  P +L +      DD G AL GS VG++  S+ +   K++ K+ L E A    AA+EA  DA+Y                     GRV Q A+PFN D+ GSYL  L+  +GA +P  A    W+ D  SG V+F      + VS + PP +SFY YVG    +T T  +      P  W A +TF GG    TGDDLAA+V+D R+L  L      M++  G   DGSWR+     GG   +  F++
Sbjct:    8 KTELLFKKLIGAPSTNENNAFYSEPIRPARPSVFQSQFYSESIPNAVPTELANAST---DDLGNALDGSLVGKSYPSAAAPVIKKYSKVVLTEVAGSNGAAYEAPLDATY---------------------GRVLQDAIPFNMDSNGSYLFTLYKQSGAVIP--AGSGQWVVDCESGIVSFYSLGSITGVSASQPPSISFYRYVGAKGAQTATQTIESIRSQPIEWTAPDTFVGGDVNTTGDDLAAIVLDDRNLTTLSNTTPAMSLQLGGDYDGSWRLCVV--GGSNTSLQFQV 273
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BLAST of mRNA_S-ischiensis_contig116.2483.1 vs. uniprot
Match: A0A836CB27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB27_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 9.710e-8
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  655 TFSGGATVGTGDDLAALVVDYRDLAALDPDQAGMAIAFGSG-DGSWRIACHWGGGDPEATVFKIE 846
            TF GG +    DDLAA+V+D RD++AL      M++  G   +GSWRI+ + GGGD  AT F+I+
Sbjct:   54 TFDGGTSSVISDDLAAIVLDDRDISALSTSTPCMSLQIGGDTNGSWRISVYGGGGDSTATSFEIQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z3L1_9STRA1.510e-3636.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB27_9STRA9.710e-846.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:95637..96482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size846
Cds size834
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.2249677-CDS-S-ischiensis_contig116:95636..964701622815628.2249677-CDS-S-ischiensis_contig116:95636..96470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 95637..96470 -
1695739813.834773-CDS-S-ischiensis_contig116:95636..964701695739813.834773-CDS-S-ischiensis_contig116:95636..96470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 95637..96470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.2401466-UTR-S-ischiensis_contig116:96470..964821622815628.2401466-UTR-S-ischiensis_contig116:96470..96482Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 96471..96482 -
1695739813.8458993-UTR-S-ischiensis_contig116:96470..964821695739813.8458993-UTR-S-ischiensis_contig116:96470..96482Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 96471..96482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2483.1prot_S-ischiensis_contig116.2483.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 95637..96470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2483.1

>prot_S-ischiensis_contig116.2483.1 ID=prot_S-ischiensis_contig116.2483.1|Name=mRNA_S-ischiensis_contig116.2483.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=278bp
MVWKKYLGQPMTSTDRNFFQEPAHPARPLVIPAQIFAEAIPDKAPADLQS
LGDSDEDDDGQALCGSYVGRTSSESYCNKRFVKIPLEAADGASAAFEATD
ASYSHPGGYADGKTASDTGSAGAYGRVAQGAVPFNHDAAGSYLVRLHGSA
GAELPMTAADTGWLFDPTSGTVTFPDDLPSSVSTANPPLLSFYAYVGKTG
TTDVHLPHWWEASNTFSGGATVGTGDDLAALVVDYRDLAALDPDQAGMAI
AFGSGDGSWRIACHWGGGDPEATVFKIE
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mRNA from alignment at S-ischiensis_contig116:95637..96482-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2483.1 ID=mRNA_S-ischiensis_contig116.2483.1|Name=mRNA_S-ischiensis_contig116.2483.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig116:95637..96482- (Schizocladia ischiensis KU_0333)
GACAAGCTCGACATGGTTTGGAAGAAATACCTCGGGCAGCCCATGACAAG
CACCGACCGCAACTTCTTCCAGGAGCCCGCCCACCCGGCCCGGCCCCTGG
TGATCCCCGCCCAGATCTTCGCGGAGGCCATCCCCGACAAGGCCCCCGCG
GACCTGCAGTCCCTTGGTGACTCGGACGAGGACGACGATGGCCAGGCCCT
GTGCGGGTCATATGTCGGCCGAACGTCGTCCGAAAGTTACTGCAACAAGA
GGTTCGTCAAAATTCCCCTAGAGGCCGCGGACGGGGCGTCGGCCGCGTTC
GAGGCCACGGACGCCTCGTACAGCCACCCCGGGGGCTACGCGGACGGCAA
GACCGCCTCCGACACGGGATCTGCCGGGGCCTACGGGCGGGTGGCCCAGG
GTGCCGTGCCCTTCAACCACGACGCCGCCGGGTCCTACCTGGTCCGTCTG
CACGGCAGTGCCGGGGCGGAGCTGCCCATGACGGCGGCCGACACGGGCTG
GCTGTTCGACCCCACCTCGGGCACCGTCACGTTCCCTGACGACCTACCGT
CATCCGTGAGCACCGCGAACCCGCCCCTGCTGTCCTTCTACGCGTACGTG
GGCAAGACGGGTACCACAGACGTGCACTTGCCCCACTGGTGGGAAGCGTC
CAACACCTTCTCGGGGGGAGCCACAGTGGGCACCGGGGATGACCTGGCGG
CCCTCGTGGTGGACTACCGTGACCTGGCGGCCCTGGACCCGGACCAAGCC
GGCATGGCAATCGCCTTCGGGTCCGGTGACGGCTCTTGGCGCATCGCGTG
CCACTGGGGGGGCGGTGACCCGGAGGCCACGGTCTTCAAGATTGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig116:95637..96482-

>mRNA_S-ischiensis_contig116.2483.1 ID=mRNA_S-ischiensis_contig116.2483.1|Name=mRNA_S-ischiensis_contig116.2483.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1668bp|location=Sequence derived from alignment at S-ischiensis_contig116:95637..96482- (Schizocladia ischiensis KU_0333)
ATGGTTTGGAAGAAATACCTCGGGCAGCCCATGACAAGCACCGACCGCAA
CTTCTTCCAGGAGCCCGCCCACCCGGCCCGGCCCCTGGTGATCCCCGCCC
AGATCTTCGCGGAGGCCATCCCCGACAAGGCCCCCGCGGACCTGCAGTCC
CTTGGTGACTCGGACGAGGACGACGATGGCCAGGCCCTGTGCGGGTCATA
TGTCGGCCGAACGTCGTCCGAAAGTTACTGCAACAAGAGGTTCGTCAAAA
TTCCCCTAGAGGCCGCGGACGGGGCGTCGGCCGCGTTCGAGGCCACGGAC
GCCTCGTACAGCCACCCCGGGGGCTACGCGGACGGCAAGACCGCCTCCGA
CACGGGATCTGCCGGGGCCTACGGGCGGGTGGCCCAGGGTGCCGTGCCCT
TCAACCACGACGCCGCCGGGTCCTACCTGGTCCGTCTGCACGGCAGTGCC
GGGGCGGAGCTGCCCATGACGGCGGCCGACACGGGCTGGCTGTTCGACCC
CACCTCGGGCACCGTCACGTTCCCTGACGACCTACCGTCATCCGTGAGCA
CCGCGAACCCGCCCCTGCTGTCCTTCTACGCGTACGTGGGCAAGACGGGT
ACCACAGACGTGCACTTGCCCCACTGGTGGGAAGCGTCCAACACCTTCTC
GGGGGGAGCCACAGTGGGCACCGGGGATGACCTGGCGGCCCTCGTGGTGG
ACTACCGTGACCTGGCGGCCCTGGACCCGGACCAAGCCGGCATGGCAATC
GCCTTCGGGTCCGGTGACGGCTCTTGGCGCATCGCGTGCCACTGGGGGGG
CGGTGACCCGGAGGCCACGGTCTTCAAGATTGAGATGGTTTGGAAGAAAT
ACCTCGGGCAGCCCATGACAAGCACCGACCGCAACTTCTTCCAGGAGCCC
GCCCACCCGGCCCGGCCCCTGGTGATCCCCGCCCAGATCTTCGCGGAGGC
CATCCCCGACAAGGCCCCCGCGGACCTGCAGTCCCTTGGTGACTCGGACG
AGGACGACGATGGCCAGGCCCTGTGCGGGTCATATGTCGGCCGAACGTCG
TCCGAAAGTTACTGCAACAAGAGGTTCGTCAAAATTCCCCTAGAGGCCGC
GGACGGGGCGTCGGCCGCGTTCGAGGCCACGGACGCCTCGTACAGCCACC
CCGGGGGCTACGCGGACGGCAAGACCGCCTCCGACACGGGATCTGCCGGG
GCCTACGGGCGGGTGGCCCAGGGTGCCGTGCCCTTCAACCACGACGCCGC
CGGGTCCTACCTGGTCCGTCTGCACGGCAGTGCCGGGGCGGAGCTGCCCA
TGACGGCGGCCGACACGGGCTGGCTGTTCGACCCCACCTCGGGCACCGTC
ACGTTCCCTGACGACCTACCGTCATCCGTGAGCACCGCGAACCCGCCCCT
GCTGTCCTTCTACGCGTACGTGGGCAAGACGGGTACCACAGACGTGCACT
TGCCCCACTGGTGGGAAGCGTCCAACACCTTCTCGGGGGGAGCCACAGTG
GGCACCGGGGATGACCTGGCGGCCCTCGTGGTGGACTACCGTGACCTGGC
GGCCCTGGACCCGGACCAAGCCGGCATGGCAATCGCCTTCGGGTCCGGTG
ACGGCTCTTGGCGCATCGCGTGCCACTGGGGGGGCGGTGACCCGGAGGCC
ACGGTCTTCAAGATTGAG
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