mRNA_S-ischiensis_contig116.2482.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2482.1
Unique NamemRNA_S-ischiensis_contig116.2482.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:85578..86818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size827
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2482.1prot_S-ischiensis_contig116.2482.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 85578..86633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.0277846-CDS-S-ischiensis_contig116:85577..859891622815628.0277846-CDS-S-ischiensis_contig116:85577..85989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 85578..85989 -
1695739813.7441614-CDS-S-ischiensis_contig116:85577..859891695739813.7441614-CDS-S-ischiensis_contig116:85577..85989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 85578..85989 -
1622815628.0410337-CDS-S-ischiensis_contig116:86284..864581622815628.0410337-CDS-S-ischiensis_contig116:86284..86458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 86285..86458 -
1695739813.7522604-CDS-S-ischiensis_contig116:86284..864581695739813.7522604-CDS-S-ischiensis_contig116:86284..86458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 86285..86458 -
1622815628.0541525-CDS-S-ischiensis_contig116:86577..866331622815628.0541525-CDS-S-ischiensis_contig116:86577..86633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 86578..86633 -
1695739813.7624192-CDS-S-ischiensis_contig116:86577..866331695739813.7624192-CDS-S-ischiensis_contig116:86577..86633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 86578..86633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.066807-UTR-S-ischiensis_contig116:86633..868181622815628.066807-UTR-S-ischiensis_contig116:86633..86818Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 86634..86818 -
1695739813.7706811-UTR-S-ischiensis_contig116:86633..868181695739813.7706811-UTR-S-ischiensis_contig116:86633..86818Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 86634..86818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2482.1

>prot_S-ischiensis_contig116.2482.1 ID=prot_S-ischiensis_contig116.2482.1|Name=mRNA_S-ischiensis_contig116.2482.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=214bp
MSFSEGADDLVRKRTENARWRSWSIEKNLNEACGEDTSPGVYGNKQLKAS
PKAWEQFHESFLNTIVNTRSLAVDMEWRQSGSVSHCSDVSLGQPLEKPRR
GPGTRASSDGTFGELDEPSPRTRANEHGNGSERGVRGGNFFSHLAGMRSY
SQGPAAMGAATAAAAEAVPAPLEQAGGGLGAGPNAPGLELLDFSGAVGLE
LADAGLELADGGDV
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mRNA from alignment at S-ischiensis_contig116:85578..86818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2482.1 ID=mRNA_S-ischiensis_contig116.2482.1|Name=mRNA_S-ischiensis_contig116.2482.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1241bp|location=Sequence derived from alignment at S-ischiensis_contig116:85578..86818- (Schizocladia ischiensis KU_0333)
CACCGACCACCCCGGCTGCGTCCAGCAGTCACAACCCGAGGATCTGGCGC
TCGCTCGGGGCCTGCGCGGGGGAAGGCGCCAATTTGCTGCCGACTGATAC
AATCTGACCCAGGCTGCGCTGGCCGAAAGTGCAGCGCCCGCCTCCACGTC
GAACAACGAAACGGAGATCGCTCTGGAGCTGATCCATGAGCTTCTCAGAG
GGCGCGGACGACCTCGTCAGGAAACGCACGGAGAACGCTAGGTGGGTGGA
GTGAAGGCAGTCCTCGAGCGATTACTCTCGCTGGAGGCGAATGCCCCCGT
TATGCGAACGCGCCGCGCTTGGCGGGTTGAACCAATCGCGAACTCTGGTG
CCTGTCTCAGGTGGCGATCATGGAGTATCGAGAAGAACCTGAACGAGGCC
TGCGGAGAGGACACCAGTCCCGGTGTCTACGGGAACAAGCAGCTGAAAGC
TTCCCCGAAGGCGTGGGAGCAGTTCCACGAGAGTTTCCTCAACACCATCG
TCAACACCCGCAGTCTGGCTGTGGACATGGAATGGTGCGCACGTGTGTTT
TTGTGTGGTTCTGTGTGTATGTTTTGTTTGTTGTGTGTGGGAGTTCTTGA
TGCCAGCTGCTTAGCAGCATCAAGAATTTTACTACAGTAGCTTGCCGACA
CTTTGTGCAAAACTTGCTCAGCGACCAATCGCGGCTGCCGCAAGGTACAT
ATGGTATCCATTGACACGCCCGAGCATTGATGTGGTCCAATGGCCCTTGC
GCAACGGCTGGCTGGCTCCATGCACCGGCTGAAGCATCTCGCCGGCGAAC
TTGTCTTGTCCCACGATTTTCAACGACAGGAGGCAAAGCGGCTCGGTCTC
CCATTGCTCCGATGTGTCCCTGGGCCAACCCTTGGAGAAACCCCGCAGGG
GGCCAGGGACCCGTGCAAGTAGTGATGGGACGTTTGGCGAGCTAGACGAG
CCCAGTCCACGGACGCGTGCGAACGAGCATGGGAACGGCAGCGAGCGCGG
CGTGCGCGGGGGGAACTTTTTCAGCCACCTGGCGGGCATGCGGTCCTACT
CGCAGGGCCCTGCCGCGATGGGGGCGGCGACGGCGGCTGCGGCGGAGGCA
GTGCCCGCTCCCCTGGAGCAGGCCGGGGGCGGCCTGGGCGCTGGCCCAAA
CGCCCCGGGACTAGAGCTATTGGACTTCTCTGGAGCAGTGGGATTGGAGC
TGGCAGACGCGGGGCTGGAGCTGGCAGATGGCGGTGACGTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig116:85578..86818-

>mRNA_S-ischiensis_contig116.2482.1 ID=mRNA_S-ischiensis_contig116.2482.1|Name=mRNA_S-ischiensis_contig116.2482.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1284bp|location=Sequence derived from alignment at S-ischiensis_contig116:85578..86818- (Schizocladia ischiensis KU_0333)
ATGAGCTTCTCAGAGGGCGCGGACGACCTCGTCAGGAAACGCACGGAGAA
CGCTAGATGAGCTTCTCAGAGGGCGCGGACGACCTCGTCAGGAAACGCAC
GGAGAACGCTAGGTGGCGATCATGGAGTATCGAGAAGAACCTGAACGAGG
CCTGCGGAGAGGACACCAGTCCCGGTGTCTACGGGAACAAGCAGCTGAAA
GCTTCCCCGAAGGCGTGGGAGCAGTTCCACGAGAGTTTCCTCAACACCAT
CGTCAACACCCGCAGTCTGGCTGTGGACATGGAATGGTGGCGATCATGGA
GTATCGAGAAGAACCTGAACGAGGCCTGCGGAGAGGACACCAGTCCCGGT
GTCTACGGGAACAAGCAGCTGAAAGCTTCCCCGAAGGCGTGGGAGCAGTT
CCACGAGAGTTTCCTCAACACCATCGTCAACACCCGCAGTCTGGCTGTGG
ACATGGAATGGAGGCAAAGCGGCTCGGTCTCCCATTGCTCCGATGTGTCC
CTGGGCCAACCCTTGGAGAAACCCCGCAGGGGGCCAGGGACCCGTGCAAG
TAGTGATGGGACGTTTGGCGAGCTAGACGAGCCCAGTCCACGGACGCGTG
CGAACGAGCATGGGAACGGCAGCGAGCGCGGCGTGCGCGGGGGGAACTTT
TTCAGCCACCTGGCGGGCATGCGGTCCTACTCGCAGGGCCCTGCCGCGAT
GGGGGCGGCGACGGCGGCTGCGGCGGAGGCAGTGCCCGCTCCCCTGGAGC
AGGCCGGGGGCGGCCTGGGCGCTGGCCCAAACGCCCCGGGACTAGAGCTA
TTGGACTTCTCTGGAGCAGTGGGATTGGAGCTGGCAGACGCGGGGCTGGA
GCTGGCAGATGGCGGTGACGTCGAGGCAAAGCGGCTCGGTCTCCCATTGC
TCCGATGTGTCCCTGGGCCAACCCTTGGAGAAACCCCGCAGGGGGCCAGG
GACCCGTGCAAGTAGTGATGGGACGTTTGGCGAGCTAGACGAGCCCAGTC
CACGGACGCGTGCGAACGAGCATGGGAACGGCAGCGAGCGCGGCGTGCGC
GGGGGGAACTTTTTCAGCCACCTGGCGGGCATGCGGTCCTACTCGCAGGG
CCCTGCCGCGATGGGGGCGGCGACGGCGGCTGCGGCGGAGGCAGTGCCCG
CTCCCCTGGAGCAGGCCGGGGGCGGCCTGGGCGCTGGCCCAAACGCCCCG
GGACTAGAGCTATTGGACTTCTCTGGAGCAGTGGGATTGGAGCTGGCAGA
CGCGGGGCTGGAGCTGGCAGATGGCGGTGACGTC
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