mRNA_S-ischiensis_contig115.2461.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig115.2461.1
Unique NamemRNA_S-ischiensis_contig115.2461.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig115.2461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig115contigS-ischiensis_contig115:3753..4800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.6726983-CDS-S-ischiensis_contig115:3752..37991622815626.6726983-CDS-S-ischiensis_contig115:3752..3799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 3753..3799 -
1695739812.8298163-CDS-S-ischiensis_contig115:3752..37991695739812.8298163-CDS-S-ischiensis_contig115:3752..3799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 3753..3799 -
1622815626.6868274-CDS-S-ischiensis_contig115:4556..48001622815626.6868274-CDS-S-ischiensis_contig115:4556..4800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 4557..4800 -
1695739812.839277-CDS-S-ischiensis_contig115:4556..48001695739812.839277-CDS-S-ischiensis_contig115:4556..4800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 4557..4800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig115.2461.1prot_S-ischiensis_contig115.2461.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig115 3753..4800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig115.2461.1

>prot_S-ischiensis_contig115.2461.1 ID=prot_S-ischiensis_contig115.2461.1|Name=mRNA_S-ischiensis_contig115.2461.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=97bp
EYCYQHLPRTHFAVLWTGQCRGAGVGPCPQWGGTPERYWLPLDTRLPKPG
EAGALWEQDWWRGGDHEWVARSAFPERKSSPGAWAFALRPHGQRRC*
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mRNA from alignment at S-ischiensis_contig115:3753..4800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig115.2461.1 ID=mRNA_S-ischiensis_contig115.2461.1|Name=mRNA_S-ischiensis_contig115.2461.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1048bp|location=Sequence derived from alignment at S-ischiensis_contig115:3753..4800- (Schizocladia ischiensis KU_0333)
GAGTATTGCTACCAGCACCTTCCGAGAACTCACTTTGCGGTACTGTGGAC
TGGACAATGCCGCGGCGCTGGCGTTGGCCCTTGCCCTCAGTGGGGAGGCA
CTCCGGAGCGGTACTGGTTGCCGTTGGATACCAGGCTTCCCAAGCCTGGA
GAAGCTGGTGCTCTGTGGGAACAAGATTGGTGGCGTGGAGGCGACCATGA
ATGGGTTGCGAGGTCTGCTTTCCCGGAGAGGAAGTCAAGTCCAGGTGAGT
TTGCACTGTGACACACTCTTGCCCTCCACAAAGTGTCTGCACTACAAGAA
TGATACTGCAGGCCGAGTTTGGCACTACTGATCTCATTTAGCTTCAACAA
CATGGTTAACAATCCTGCTGTACGAGCTCATAATAATCACATTGCCCTCG
GCTCTCATTTGGGTCAAGTGGGCAGACCAGTCCGCACACTCTGTATGCCG
TTCATTCCTGCCCCCTCCCCTCTATGCACGGGATTGGAAGCAGTTTTGAA
TGCCTTGGAGGTCATCTACGTACTTGGATGTACTTGGAAGCGTATACTGC
GCGATATGCACCTCTGCATGAAGCCAATGCTATTTAGTACTGCACTGCTC
TGCTCGCACAAGGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCA
CATGAGTACATATATACTATGCCGGTTGGGAGTCATACATACTGTAGTTT
CTGCTGCACTGTACTTTTAGTACTGCACTGCTCTGCTCGCACAAGGCGCG
GGGTCAATGGTCTCGGGACTACGGCAAGCACCACATGAGTACATATATAC
TATGCCGGTTGGGAGTCATACATACTGTAGTTTCTGCTGCACTGTACTTC
CGCAAGTACAAAGCACTGCACAGCCGTGGTCTGTGCTTCAGCATTGCTGT
GAACACCAAAACATACAGGTCAGCAGTGGATCGCCAGGAGTCATCAGCGC
CCCCCTAATGGAGCCTCATCCACCCTGTTGCCGCTGACACCCTGAACAAA
GGTGCTTGGGCTTTCGCGCTGCGACCTCACGGACAACGACGTTGCTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig115:3753..4800-

>mRNA_S-ischiensis_contig115.2461.1 ID=mRNA_S-ischiensis_contig115.2461.1|Name=mRNA_S-ischiensis_contig115.2461.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig115:3753..4800- (Schizocladia ischiensis KU_0333)
GAGTATTGCTACCAGCACCTTCCGAGAACTCACTTTGCGGTACTGTGGAC
TGGACAATGCCGCGGCGCTGGCGTTGGCCCTTGCCCTCAGTGGGGAGGCA
CTCCGGAGCGGTACTGGTTGCCGTTGGATACCAGGCTTCCCAAGCCTGGA
GAAGCTGGTGCTCTGTGGGAACAAGATTGGTGGCGTGGAGGCGACCATGA
ATGGGTTGCGAGGTCTGCTTTCCCGGAGAGGAAGTCAAGTCCAGGAGTAT
TGCTACCAGCACCTTCCGAGAACTCACTTTGCGGTACTGTGGACTGGACA
ATGCCGCGGCGCTGGCGTTGGCCCTTGCCCTCAGTGGGGAGGCACTCCGG
AGCGGTACTGGTTGCCGTTGGATACCAGGCTTCCCAAGCCTGGAGAAGCT
GGTGCTCTGTGGGAACAAGATTGGTGGCGTGGAGGCGACCATGAATGGGT
TGCGAGGTCTGCTTTCCCGGAGAGGAAGTCAAGTCCAGGTGCTTGGGCTT
TCGCGCTGCGACCTCACGGACAACGACGTTGCTAAGTGCTTGGGCTTTCG
CGCTGCGACCTCACGGACAACGACGTTGCTAA
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