mRNA_S-ischiensis_contig113.2455.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig113.2455.1
Unique NamemRNA_S-ischiensis_contig113.2455.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig113.2455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig113contigS-ischiensis_contig113:135088..137253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2303176-CDS-S-ischiensis_contig113:135087..1351651622815625.2303176-CDS-S-ischiensis_contig113:135087..135165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 135088..135165 +
1695739811.9196126-CDS-S-ischiensis_contig113:135087..1351651695739811.9196126-CDS-S-ischiensis_contig113:135087..135165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 135088..135165 +
1622815625.2442284-CDS-S-ischiensis_contig113:137149..1372511622815625.2442284-CDS-S-ischiensis_contig113:137149..137251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 137150..137251 +
1695739811.9316802-CDS-S-ischiensis_contig113:137149..1372511695739811.9316802-CDS-S-ischiensis_contig113:137149..137251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 137150..137251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig113.2455.1prot_S-ischiensis_contig113.2455.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig113 135088..137251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig113.2455.1

>prot_S-ischiensis_contig113.2455.1 ID=prot_S-ischiensis_contig113.2455.1|Name=mRNA_S-ischiensis_contig113.2455.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=60bp
LEACTGVAVESLAVVENVARLLVLHQVAEASPYCRGTWQKHAVAERRRVS
LLTSLPPGGG
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mRNA from alignment at S-ischiensis_contig113:135088..137253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig113.2455.1 ID=mRNA_S-ischiensis_contig113.2455.1|Name=mRNA_S-ischiensis_contig113.2455.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2166bp|location=Sequence derived from alignment at S-ischiensis_contig113:135088..137253+ (Schizocladia ischiensis KU_0333)
CTGGAGGCGTGCACGGGGGTGGCGGTGGAGAGTCTGGCCGTGGTGGAGAA
TGTGGCGAGGCTCTTGGTGCTGCACCAGGCGAGTGGCTTAACCCTTTTAG
CCCTGGGGTCCATACAATCATAGGGTTTTGGTGTGCTCCGTCTCGACCGA
GGCGCGTGGTCAATGGTCTCGGGACTACGGCCAGCACCACGTGAGTACAT
ATATATAACTCACATCTAGCAGGGGTAAAAAGGGTTAAGTGCCTGTTGCC
GCATGCTTCGGGCGGATCGCTCCCCCCCCAGGGCAGTTTGCGGCACGTTT
TCTCCACAATACCCGCCGGGTGGGTCATTCGTGAAGTGCCCAGAGGTCCC
TCGGACGAAACCCCCCTGGAATTTTTCCGCGCGAACGAACGTATCCGACC
GATATTCGGCGAGAATGCCCTCCCGAACTTTGGCGCGCGGGAGGGGGGGG
GGGGGGGCAAGATCTATCTGAGAGATAGGGCAGCAAGTTGCCGGTGGCAA
AAAATCGCGAAACGTGCATGTTGGGGTGCTTGGAAGCGCTGTGCAGGGCT
TGGAAGTGGGGGATGAGAGCAGCGAGCTTACTTTAGTCCCGTGCCTCCCT
CTCTCCCCCCGTCCCTCCCCCCCTTCCCCCCCTTCCTCTTGTTCCCTCCC
CCCCCTCCTTCCCTGGCGAGCCAGGAAGGGCCACTGTTGAGGCCGTTGGT
GACGTGGCTCACCTCAAACTGTGTTTTTTGCATTATTTTGATGGCCTGTG
AGTTCCGGGCCCCGTCCCAACAACCTAAGGTTGGGGACCTCACCAGAAGC
CCTTCTTTCCACCTGCAGGGCGTAGAAACCAAGCAAAGAAGCTACTGTAC
ACGATGCATGTTGCTACTATCCTGCTATATACTCACTTCGAAGTCAGGTA
AATGACCTATATAGTGGGCCGGTTTCGTCGGCCGCGAAAAGGCCCTGTTT
AAAGCGCCGTACTGTAGTTTGTGCACCGCCGGTCTTAAATGCCGTAGTTT
GCAGCCGTTCCGATGTTGAAACAATTTCCAACATGTCGCGGTCTTCAGTC
AAACAAGCCGTGATTGTTGTACAGTGGGCGGAGACAAGAGGCGCAAATGT
CTACCTGTACGGCAACCTCAGACTGCCTGGCAGCTAGACTCGCTACAAAA
AGGGAATCCCATTTTTTCGCTTTTTGGGTCCAAATTGGCACCTTTTCCTT
TTTTGGGCAAGAAGTGCTTTTTAGGTAGGAAAATGGACCCGGCCCGGTCA
AAAGGCCTGATCACGGTGTGGAAACCCCGGCCCGGGCAGCCTTCCGGCCC
GACCTGGCCCTGGTCCTTCCCTGCCTGACCCGGGTCTGGTCCGGGTCACG
TTGGCCGATCAGGGCCGGACCCGGCGGGCCGACGCCCGGACCCGGCGGGT
CGGGCTCCTTTTTGGGCAATATTTGGCCAGTTTTTGGGCAACTTTCGTAC
CCTTTTGCTTTTCCTTTTTGGGCAAATTTTACTCCTTTTTTGTAGCGAGG
CTACTGGCAGCATGGGTGAAGGGCTTGGTCTGGAGCGGGGCACAGGGCGC
CGCCCTGATAGACCCGCGTATTTGATGCCACCGCCCCCCCCGTCCCCCCC
AACCCCCCCCCCCGAGAGAACAGCCCGAACGTGTGGGCTTAAATGGGATA
ACCACTAATACGATAGCCTCCATCTCACACACGATTGTGCCTCGTTACAA
TTTTTACTTTGTATGAATCACAGCCCGACCGTTTGGGTTCCCAAGTCATG
TGAATCATCAACTCGCTCAGAGCTTGCACACCTTTGCCTCCGTCCGCCAC
GACCTCTTTTGTTCCCCCCTCTTTGCTTTCAGTTCTTTGATGTGATAGTC
ACTACTTCGAACTACTTCGAAGTACATAGTACGAGAAAACTCAATTCTTA
AATGGGACAACCACTAGTATTAGCTGGAACAACACGGGGCGAGGTGCGGG
CCACGTCACTAGAGACCTCAGCAGTGGCCCTTCCTTGTATGAATACGAGA
ACATTCAATCTCACACAGTGTGATTGTACCCCGTTACGATTCATATGAAT
CTCCGCGAGCAGGTGGCCGAGGCGTCCCCCTACTGCCGCGGCACGTGGCA
GAAGCACGCCGTGGCCGAACGGCGCCGCGTCTCCCTCCTCACATCCCTGC
CTCCGGGAGGCGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig113:135088..137253+

>mRNA_S-ischiensis_contig113.2455.1 ID=mRNA_S-ischiensis_contig113.2455.1|Name=mRNA_S-ischiensis_contig113.2455.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig113:135088..137253+ (Schizocladia ischiensis KU_0333)
CTGGAGGCGTGCACGGGGGTGGCGGTGGAGAGTCTGGCCGTGGTGGAGAA
TGTGGCGAGGCTCTTGGTGCTGCACCAGCTGGAGGCGTGCACGGGGGTGG
CGGTGGAGAGTCTGGCCGTGGTGGAGAATGTGGCGAGGCTCTTGGTGCTG
CACCAGGTGGCCGAGGCGTCCCCCTACTGCCGCGGCACGTGGCAGAAGCA
CGCCGTGGCCGAACGGCGCCGCGTCTCCCTCCTCACATCCCTGCCTCCGG
GAGGCGGCGTGGCCGAGGCGTCCCCCTACTGCCGCGGCACGTGGCAGAAG
CACGCCGTGGCCGAACGGCGCCGCGTCTCCCTCCTCACATCCCTGCCTCC
GGGAGGCGGC
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