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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 474 |
| Cds size | 267 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815624.826283-UTR-S-ischiensis_contig113:58968..59152 | 1622815624.826283-UTR-S-ischiensis_contig113:58968..59152 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig113 58969..59152 - |
| 1695739811.8583474-UTR-S-ischiensis_contig113:58968..59152 | 1695739811.8583474-UTR-S-ischiensis_contig113:58968..59152 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig113 58969..59152 - |
| 1622815624.8620625-UTR-S-ischiensis_contig113:60655..60678 | 1622815624.8620625-UTR-S-ischiensis_contig113:60655..60678 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig113 60656..60678 - |
| 1695739811.8826015-UTR-S-ischiensis_contig113:60655..60678 | 1695739811.8826015-UTR-S-ischiensis_contig113:60655..60678 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig113 60656..60678 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815624.8374724-CDS-S-ischiensis_contig113:59152..59382 | 1622815624.8374724-CDS-S-ischiensis_contig113:59152..59382 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig113 59153..59382 - |
| 1695739811.8664482-CDS-S-ischiensis_contig113:59152..59382 | 1695739811.8664482-CDS-S-ischiensis_contig113:59152..59382 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig113 59153..59382 - |
| 1622815624.8519447-CDS-S-ischiensis_contig113:60618..60655 | 1622815624.8519447-CDS-S-ischiensis_contig113:60618..60655 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig113 60619..60655 - |
| 1695739811.8745291-CDS-S-ischiensis_contig113:60618..60655 | 1695739811.8745291-CDS-S-ischiensis_contig113:60618..60655 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig113 60619..60655 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig113.2448.1 >prot_S-ischiensis_contig113.2448.1 ID=prot_S-ischiensis_contig113.2448.1|Name=mRNA_S-ischiensis_contig113.2448.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=89bp
MQALPSGTCPRCATIRPFFLDPQHCLVFPRDRDSCPPTATAPATAWSAAF
SLPVRRSGLHPQRCHSCQRLGTLQCPSHAYSKRVIVVL* back to topmRNA from alignment at S-ischiensis_contig113:58969..60678- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig113.2448.1 ID=mRNA_S-ischiensis_contig113.2448.1|Name=mRNA_S-ischiensis_contig113.2448.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig113:58969..60678- (Schizocladia ischiensis KU_0333)
CTAGGTGCTACAATTCACCTTAAATGCAGGCCCTACCCTCAGGCACCTGC
CCCAGATGTGGTGAGACACCCAGGTGTGGCTGTTGTAGGTTCTTCTTCAG
GAAACAGGAATAAGTCGTGAGCTGTGTCCAGCTCACACCGCGATGCGGTC
ACAGGTAGGCTTTCCAGAGTCAATTCTTGAATTACAGACAGATGTCACTC
CCTCAATCGGTCAGGGCTGTCATGCACTGAGCGTGGAGCTCGTGGGGAGT
CCAGGGCTCGCCCCAAATTCGCTGGAACAGGGCAACACTGACTGGGTTGC
CTGGCCTTTTGCTACCTAGAGACAAGACAGATTAGGGGCTCCGCCTGCTC
ACAGGGACACCAGCCCATACTCAACTCTAGATGTTCCGGCACATACAAGT
ATTCTGCCTAACCTGGCAGTCGCCTAAAACTCAACCCAAAGGTCAAAACT
AGATGGCAGTTACAGTACAGTTACATAACGCCTGCCAATACTCCAGGGGC
AACCTGCCAGGCTGTAGACTGACAGCTGCGCTCTGACACGACACGAGACG
CTCCATGCGCGTGTGGGGCAGTCGCGTATTGGACTGCGGCACAGGTGAGC
AGCTGGATCACGTGTGGCCTTGCCCGGGGGAGAGAGTGGTCTACCTTCTT
TTCGATCTATGGGCCGCGCTTCTATTGTGTTGTGATACAGCGGGTGCGGA
CCTTGGTTTGCCGGACATAACACGTTGGGGCGCGTGGTTCAGAGGGAGCA
GGTAGAGCGTAGCCGCCGGGAGATCGTGCCAAGACCCGCGTGGAACTCCC
GACTGGGAGCTTGCAGACCTATCGAGCGCTGCCACCTCAAAGCCCGGCCC
GTACACCCAGTCTCGAGGACAGATGACGCCCATCATGTACCTCTAGTACT
ATGGCGTCTCCTTCTTTAATCAGACATCCAGTCACGTTCTGGATTTTCTC
GAGGGATGGGTTATATTTCCCCCTGGCTTCAGTAGCATCCAGCGGCAGCG
CTTTGAACACTGCGACCACGGTGTTTTTGCCGGAAATCAAGGTTCTCGCG
TAATCGCACTGCGAGTAATGTCCAACATGACTTTCAGTTCATGGTACTTA
CTGTACATGGCGGGTTTTCCTTGTTGGGAGGAACCGTTAGATCTTCCCCC
TTGCCGCCGCCACGTCAGATGCAAAACTGCAGCCGTCCAGATGCCCGCCC
CCCGCTGCAACTACTTATTTGCTCGCGCCGGCCACCCCGTCTCTCACCCG
CCGTTCATCTCATTCCCCTCCCGCATGTCCCTCCCCCTTTTGCCAGCAAC
AATCCGTCCATTCTTCCTGGACCCCCAGCATTGCCTCGTCTTCCCCAGGG
ACAGGGACAGCTGCCCGCCAACGGCAACGGCACCGGCAACGGCATGGAGC
GCGGCTTTCTCTCTTCCGGTCAGACGCTCGGGTCTGCACCCGCAGCGGTG
CCACAGCTGCCAGAGGCTAGGCACTCTACAGTGTCCGTCACATGCGTACT
CTAAACGTGTAATCGTAGTTTTGTAGCCAGGGCGTATTATATTGTTCAGC
ATGTCACATTGACAGACCCAAAGTTAAACTCACACAGGGCTTGCCCTCCC
GCTGGCGTAAGCTATTTCGCCATTGGCCCTCGCGTCCCAGCTACCGTAGT
CATCGGAGAGATATTGCCCCCACGGGCCAATTTTCGGGGGAACATTTCTT
GCCAGGAAGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig113:58969..60678- >mRNA_S-ischiensis_contig113.2448.1 ID=mRNA_S-ischiensis_contig113.2448.1|Name=mRNA_S-ischiensis_contig113.2448.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=534bp|location=Sequence derived from alignment at S-ischiensis_contig113:58969..60678- (Schizocladia ischiensis KU_0333)
ATGCAGGCCCTACCCTCAGGCACCTGCCCCAGATGTGATGCAGGCCCTAC
CCTCAGGCACCTGCCCCAGATGTGCAACAATCCGTCCATTCTTCCTGGAC
CCCCAGCATTGCCTCGTCTTCCCCAGGGACAGGGACAGCTGCCCGCCAAC
GGCAACGGCACCGGCAACGGCATGGAGCGCGGCTTTCTCTCTTCCGGTCA
GACGCTCGGGTCTGCACCCGCAGCGGTGCCACAGCTGCCAGAGGCTAGGC
ACTCTACAGTGTCCGTCACATGCGTACTCTAAACGTGTAATCGTAGTTTT
GTAGCAACAATCCGTCCATTCTTCCTGGACCCCCAGCATTGCCTCGTCTT
CCCCAGGGACAGGGACAGCTGCCCGCCAACGGCAACGGCACCGGCAACGG
CATGGAGCGCGGCTTTCTCTCTTCCGGTCAGACGCTCGGGTCTGCACCCG
CAGCGGTGCCACAGCTGCCAGAGGCTAGGCACTCTACAGTGTCCGTCACA
TGCGTACTCTAAACGTGTAATCGTAGTTTTGTAG back to top
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