mRNA_S-ischiensis_contig112.2435.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig112.2435.1
Unique NamemRNA_S-ischiensis_contig112.2435.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig112.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig112contigS-ischiensis_contig112:21163..21751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size589
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig112.2435.1prot_S-ischiensis_contig112.2435.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig112 21382..21729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.5848293-UTR-S-ischiensis_contig112:21162..213811622815623.5848293-UTR-S-ischiensis_contig112:21162..21381Schizocladia ischiensis KU_0333UTRS-ischiensis_contig112 21163..21381 +
1695739811.051535-UTR-S-ischiensis_contig112:21162..213811695739811.051535-UTR-S-ischiensis_contig112:21162..21381Schizocladia ischiensis KU_0333UTRS-ischiensis_contig112 21163..21381 +
1622815623.6137938-UTR-S-ischiensis_contig112:21729..217511622815623.6137938-UTR-S-ischiensis_contig112:21729..21751Schizocladia ischiensis KU_0333UTRS-ischiensis_contig112 21730..21751 +
1695739811.0760999-UTR-S-ischiensis_contig112:21729..217511695739811.0760999-UTR-S-ischiensis_contig112:21729..21751Schizocladia ischiensis KU_0333UTRS-ischiensis_contig112 21730..21751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.5995746-CDS-S-ischiensis_contig112:21381..217291622815623.5995746-CDS-S-ischiensis_contig112:21381..21729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig112 21382..21729 +
1695739811.0654368-CDS-S-ischiensis_contig112:21381..217291695739811.0654368-CDS-S-ischiensis_contig112:21381..21729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig112 21382..21729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig112.2435.1

>prot_S-ischiensis_contig112.2435.1 ID=prot_S-ischiensis_contig112.2435.1|Name=mRNA_S-ischiensis_contig112.2435.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
MPASTAPCSSHIFSSTLTLLSLEARGQWSRDYGNHNVSTSTYIYTSGLSA
TVLLLLRLDRGAWSMVSGLLYGNHNVSTSKYIYTAGLYCNCTATYTCLVL
TYLATGPPPPPPPPR*
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mRNA from alignment at S-ischiensis_contig112:21163..21751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig112.2435.1 ID=mRNA_S-ischiensis_contig112.2435.1|Name=mRNA_S-ischiensis_contig112.2435.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=589bp|location=Sequence derived from alignment at S-ischiensis_contig112:21163..21751+ (Schizocladia ischiensis KU_0333)
CGGTAAACGGCTAAGGCATTGCCAATTCAACGAACAACGTTCATGTCACC
CGCTCCGGCTACGCGATTGGCCACCGGTCGGTGAACCGGTTAAACCAGTT
GCTGCTGGTACCGACCGGTAAGAACCGGCACCATTTCACAACCCTATTTT
TATCCCTCATTCACGCCAATCAGTCGGCAATATCTACTGCAGCGCGAGTG
CTTGTGCAGGAGATAGTGAATGCCGGCAAGTACAGCACCATGTTCTTCGC
ATATTTTCTCGAGTACTCTTACGCTGCTCTCTCTCGAGGCGCGTGGTCAA
TGGTCTCGGGACTACGGCAACCACAACGTGAGTACTTCGACGTACATATA
TACCTCAGGACTGTCTGCAACTGTACTGCTACTGCTCCGTCTCGACCGAG
GCGCGTGGTCAATGGTCTCGGGACTATTGTACGGCAACCACAACGTGAGT
ACTTCGAAGTACATATATACTGCAGGACTGTACTGCAACTGTACTGCTAC
CTATACCTGCTTGGTACTCACATACCTGGCTACGGGACCGCCGCCGCCGC
CGCCGCCGCCGCGATGACCGGACCGGACTGCTACAGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig112:21163..21751+

>mRNA_S-ischiensis_contig112.2435.1 ID=mRNA_S-ischiensis_contig112.2435.1|Name=mRNA_S-ischiensis_contig112.2435.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig112:21163..21751+ (Schizocladia ischiensis KU_0333)
ATGCCGGCAAGTACAGCACCATGTTCTTCGCATATTTTCTCGAGTACTCT
TACGCTGCTCTCTCTCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCA
ACCACAACGTGAGTACTTCGACGTACATATATACCTCAGGACTGTCTGCA
ACTGTACTGCTACTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGGTCTC
GGGACTATTGTACGGCAACCACAACGTGAGTACTTCGAAGTACATATATA
CTGCAGGACTGTACTGCAACTGTACTGCTACCTATACCTGCTTGGTACTC
ACATACCTGGCTACGGGACCGCCGCCGCCGCCGCCGCCGCCGCGATGAAT
GCCGGCAAGTACAGCACCATGTTCTTCGCATATTTTCTCGAGTACTCTTA
CGCTGCTCTCTCTCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAC
CACAACGTGAGTACTTCGACGTACATATATACCTCAGGACTGTCTGCAAC
TGTACTGCTACTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGGTCTCGG
GACTATTGTACGGCAACCACAACGTGAGTACTTCGAAGTACATATATACT
GCAGGACTGTACTGCAACTGTACTGCTACCTATACCTGCTTGGTACTCAC
ATACCTGGCTACGGGACCGCCGCCGCCGCCGCCGCCGCCGCGATGA
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