mRNA_S-ischiensis_contig111.2431.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig111.2431.1
Unique NamemRNA_S-ischiensis_contig111.2431.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig111.2431.1 vs. uniprot
Match: D8LBX7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBX7_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.380e-23
Identity = 159/440 (36.14%), Postives = 197/440 (44.77%), Query Frame = 1 
Query:  148 VTATSWLEIQFGRSAETCGDGXXXXXXXXXATTGQNGGHWDEPRGAAWSPEGVCVPLGTERFDVLDWGVPLPSIPTSAATVRAAAVTXXXXXXXXXXXXXVGGAGFFCGTDALVNSVLGQAGGVPACAVDPAGG--VGAWGASGXXXXXXXXXXXXXXXXSATAPNGTASPSVARLTSLASFRLRLTGLGGDDRACSSALPLLLVGGREAARRSWDVGAARGGAVSPRPGEGKGVGPDASNRGPAAEATAAAAKRVVWGRGNREFATRVAGQVAHVRVEEC------GD----SASDRTALELAVTCSHEAMAPLVREALLSR-GQAAAAAAAEGTGAHNTRGASGPRAKTQAAAAQAAVAVGERATLEGPAAAAGALSRVLHVAAEALAGAGDAALGLDAARCEDGPSPGLSREALLVMRRVGEVYRGLRERQEEAGAV 1428
            VT TSWL+ ++G +    G G          T G+N         A     GVCV LG+ RFDVLDWGV LPS+P SAA VRAA+                G    FCG D  +  V G   G P+ A    GG          XXXXXXXXXXXXXXXX   A +  A P+V    S +SFRL +      DR   + L LL+                                                        G  E A RVAGQVA VR  +C      GD    +A+  TA E+AVTCSH AMAPLVREAL+ R G    ++   G G     G SG     +         +G R   +G AAA   L+R ++   +A+A  GDAA  L A R  DGPS   ++EAL +M R+GE+Y+ LR +QE AG V
Sbjct:  604 VTVTSWLQFRYGANG---GGGDWDGGSPGGGTGGEN---------AHDEAAGVCVELGSSRFDVLDWGVRLPSVPRSAAAVRAASR---------------GRGSSFCGPDLAIADVFG---GSPSAA----GGRKXXXXXXXXXXXXXXXXXXXXXXXXGMRAVSTAARPAVP--ASWSSFRLHVRC---PDRDAGALLALLVPXXXXXXXXXXXX-------------------------------------XXXXXDGQAEVAVRVAGQVAIVRATDCAPAGGEGDGRARAAAGPTAAEVAVTCSHAAMAPLVREALVRRAGSLLVSSPENGRGREPGVGNSGGSGSGE---------IGVR--QQGDAAAR--LAREIYPMRQAVADVGDAARALGAERAGDGPSTKSAKEALALMYRMGEIYQSLRRQQETAGLV 954
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig111.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBX7_ECTSI1.380e-2336.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig111contigS-ischiensis_contig111:114553..116242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1690
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig111.2431.1prot_S-ischiensis_contig111.2431.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig111 115597..115986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.9529564-UTR-S-ischiensis_contig111:114552..1155961622815622.9529564-UTR-S-ischiensis_contig111:114552..115596Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 114553..115596 +
1695739810.5503879-UTR-S-ischiensis_contig111:114552..1155961695739810.5503879-UTR-S-ischiensis_contig111:114552..115596Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 114553..115596 +
1622815622.9780521-UTR-S-ischiensis_contig111:115986..1162421622815622.9780521-UTR-S-ischiensis_contig111:115986..116242Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 115987..116242 +
1695739810.5709538-UTR-S-ischiensis_contig111:115986..1162421695739810.5709538-UTR-S-ischiensis_contig111:115986..116242Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 115987..116242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.9657803-CDS-S-ischiensis_contig111:115596..1159861622815622.9657803-CDS-S-ischiensis_contig111:115596..115986Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 115597..115986 +
1695739810.5604162-CDS-S-ischiensis_contig111:115596..1159861695739810.5604162-CDS-S-ischiensis_contig111:115596..115986Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 115597..115986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig111.2431.1

>prot_S-ischiensis_contig111.2431.1 ID=prot_S-ischiensis_contig111.2431.1|Name=mRNA_S-ischiensis_contig111.2431.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=130bp
MAPLVREALLSRGQAAAAAAAEGTGAHNTRGASGPRAKTQAAAAQAAVAV
GERATLEGPAAAAGALSRVLHVAAEALAGAGDAALGLDAARCEDGPSPGL
SREALLVMRRVGEVYRGLRERQEEAGAVA*
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mRNA from alignment at S-ischiensis_contig111:114553..116242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig111.2431.1 ID=mRNA_S-ischiensis_contig111.2431.1|Name=mRNA_S-ischiensis_contig111.2431.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1690bp|location=Sequence derived from alignment at S-ischiensis_contig111:114553..116242+ (Schizocladia ischiensis KU_0333)
AGGGGAACTGCCGCGGACAAGGATGGCGGGGGGCTTTTGGGTGCAGGCTG
GGCATGGTCCTCGTCCACCCCTCTGCCCTTGGCCTTGCTGCGGCGCGGGG
CAGAGTGGGAGACCTCCTTGTCGCTGTCGCTACCCTCGCCCCACCCGGTG
ACGGCAACGAGCTGGCTCGAGATCCAGTTTGGCCGCAGCGCCGAGACCTG
TGGAGATGGCGGAGGCGGCGGCGGCGGGGGCGGCGGAGCCACCACAGGGC
AGAACGGTGGCCACTGGGACGAGCCGCGGGGAGCTGCTTGGAGCCCAGAA
GGCGTGTGTGTGCCCCTCGGGACCGAGAGGTTCGACGTGCTGGACTGGGG
AGTCCCTCTGCCGTCGATCCCCACCAGCGCGGCCACCGTGCGAGCGGCCG
CCGTGACCCCCGACGGCGGCGGCGGTGACGGTGGTGGTGGCAGCAGCGTT
GGCGGAGCAGGCTTCTTCTGCGGCACGGATGCCCTGGTAAACAGCGTGCT
CGGACAGGCAGGAGGGGTGCCCGCATGCGCCGTGGACCCGGCAGGGGGGG
TTGGTGCGTGGGGTGCCAGCGGAGGTGGCGGCGTGGTGCCGGCGGCGGCG
GCGGTGGTGGCAGCCGCAGCATCTGCGACTGCCCCCAACGGCACGGCTTC
GCCATCCGTGGCCCGGCTCACGAGCTTGGCTAGCTTCCGCCTGCGGCTCA
CCGGCCTCGGGGGTGATGACCGAGCCTGCTCCTCTGCACTCCCTCTTCTG
CTCGTCGGCGGCCGCGAGGCTGCCAGGCGCTCCTGGGACGTGGGCGCAGC
CCGCGGTGGGGCAGTGTCACCGCGGCCCGGGGAAGGGAAAGGAGTGGGGC
CTGACGCAAGCAACAGGGGCCCGGCAGCGGAGGCAACAGCGGCGGCGGCA
AAACGTGTGGTGTGGGGTCGGGGGAATCGGGAGTTTGCCACTCGGGTGGC
AGGGCAGGTTGCTCATGTCCGCGTCGAGGAGTGCGGCGACAGCGCCAGTG
ACCGCACCGCGCTGGAGTTGGCTGTGACGTGCTCGCACGAGGCGATGGCG
CCGCTTGTGCGCGAGGCGCTCTTGTCTCGGGGCCAGGCCGCCGCCGCCGC
CGCCGCCGAGGGCACCGGGGCTCACAACACCCGTGGCGCCAGCGGCCCGC
GGGCCAAGACCCAGGCCGCGGCGGCCCAGGCAGCGGTGGCAGTCGGCGAG
CGGGCCACACTGGAAGGCCCGGCGGCGGCTGCGGGGGCGCTCTCGCGGGT
GTTGCACGTGGCCGCAGAGGCGTTGGCGGGGGCGGGGGACGCCGCCCTGG
GGCTGGACGCGGCGCGGTGCGAGGATGGCCCGTCCCCGGGGCTGTCACGG
GAGGCCCTCCTGGTCATGCGGCGGGTCGGAGAGGTGTACAGGGGCCTGCG
GGAACGGCAGGAGGAGGCAGGGGCGGTGGCGTGATGAGCTGCCGGGGGCG
GGGACTCTCCCTGAATCGGGGCGGTCATGGGCAGGGGCGGGCTTCCAGCG
TAGCCCTTAGGTGGCGACGGTTGACTACACTATTGGAGTTTAATGAGCGC
TGAGTGCACCTCCGCCCCTCAAGGGTCATTGGCAAGCACTATGGCTCCGG
GAGCCCGGCCTGAACCTTGACGTTTTTGCTGGTCATGATTACAGTACATT
CTCTGTAGGAGGGAGACATTTAATTCATGGATTATTGTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig111:114553..116242+

>mRNA_S-ischiensis_contig111.2431.1 ID=mRNA_S-ischiensis_contig111.2431.1|Name=mRNA_S-ischiensis_contig111.2431.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=780bp|location=Sequence derived from alignment at S-ischiensis_contig111:114553..116242+ (Schizocladia ischiensis KU_0333)
ATGGCGCCGCTTGTGCGCGAGGCGCTCTTGTCTCGGGGCCAGGCCGCCGC
CGCCGCCGCCGCCGAGGGCACCGGGGCTCACAACACCCGTGGCGCCAGCG
GCCCGCGGGCCAAGACCCAGGCCGCGGCGGCCCAGGCAGCGGTGGCAGTC
GGCGAGCGGGCCACACTGGAAGGCCCGGCGGCGGCTGCGGGGGCGCTCTC
GCGGGTGTTGCACGTGGCCGCAGAGGCGTTGGCGGGGGCGGGGGACGCCG
CCCTGGGGCTGGACGCGGCGCGGTGCGAGGATGGCCCGTCCCCGGGGCTG
TCACGGGAGGCCCTCCTGGTCATGCGGCGGGTCGGAGAGGTGTACAGGGG
CCTGCGGGAACGGCAGGAGGAGGCAGGGGCGGTGGCGTGAATGGCGCCGC
TTGTGCGCGAGGCGCTCTTGTCTCGGGGCCAGGCCGCCGCCGCCGCCGCC
GCCGAGGGCACCGGGGCTCACAACACCCGTGGCGCCAGCGGCCCGCGGGC
CAAGACCCAGGCCGCGGCGGCCCAGGCAGCGGTGGCAGTCGGCGAGCGGG
CCACACTGGAAGGCCCGGCGGCGGCTGCGGGGGCGCTCTCGCGGGTGTTG
CACGTGGCCGCAGAGGCGTTGGCGGGGGCGGGGGACGCCGCCCTGGGGCT
GGACGCGGCGCGGTGCGAGGATGGCCCGTCCCCGGGGCTGTCACGGGAGG
CCCTCCTGGTCATGCGGCGGGTCGGAGAGGTGTACAGGGGCCTGCGGGAA
CGGCAGGAGGAGGCAGGGGCGGTGGCGTGA
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