mRNA_S-ischiensis_contig110.2408.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2408.1
Unique NamemRNA_S-ischiensis_contig110.2408.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A7S6ZPC2_9STRA (50S ribosomal protein L6, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC2_9STRA)

HSP 1 Score: 350 bits (897), Expect = 7.850e-122
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A0R6MG01_UNDPI (50S ribosomal protein L6, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MG01_UNDPI)

HSP 1 Score: 260 bits (664), Expect = 2.540e-86
Identity = 125/178 (70.22%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPIKVP NV+V I    I+VSGPHGKL RKISD+I +  +DN + ++K  ++RI+ QL+GLSRTLINNM++GVS++FER LEL+GVGYR Q+KGK+L+LNLGYSHPI++ IP GIE++VE N  +I+ GFD ELVGQ AATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINQNNIEVSGPHGKLFRKISDVISVELSDNIIYVKKNENTRIANQLYGLSRTLINNMVVGVSQKFERTLELQGVGYRAQLKGKDLVLNLGYSHPILIAIPLGIEIKVEKNVGIIITGFDNELVGQLAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0FAR1_9PHAE (Ribosomal protein L6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR1_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 2.540e-86
Identity = 126/178 (70.79%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPIKVP +VEV I  Q+I +SGPHGKL RKISDL+ +   D  + ++K  D+RI+ QL+GL+RTLINNM+IGVSE+FE  L+L+GVGYRGQ+KGKELILNLGYSH +++ IP GI+++VE N  +I+ GFDKELVGQ AATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPSSVEVEINQQIIHISGPHGKLFRKISDLMSVEVNDGNIYVKKNKDTRIANQLYGLTRTLINNMVIGVSEKFELTLQLQGVGYRGQVKGKELILNLGYSHQVLIPIPVGIDIKVEKNVIIIITGFDKELVGQIAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0F7U1_9PHAE (Ribosomal protein L6 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7U1_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 8.460e-85
Identity = 121/178 (67.98%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M+RIGKLPIKVP NV+V +  + I VSGPHGKL R  SDLI +  TDN + ++K  ++RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR Q++GK+L+LNLGYSHP+++ IPEGI+++VE N  +I+ GFDKELVGQ AATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MARIGKLPIKVPSNVQVEVNKKNIKVSGPHGKLFRTFSDLISVELTDNIIYVKKMENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLQGVGYRAQVQGKDLVLNLGYSHPVLISIPEGIDIKVEKNVGIIITGFDKELVGQLAATIRGKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: D1J738_ECTSI (50S ribosomal protein L6, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J738_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.200e-84
Identity = 123/178 (69.10%), Postives = 150/178 (84.27%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPIKVP NV+V I  +++ VSGP GKL R ISDLI +   DN + + K  ++RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR QIKGK+LILNLGYSHP+++ IP GI+++VE N  +I+ GFDKEL+GQ AATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINEKIVQVSGPQGKLFRTISDLISVELRDNKIYVSKNENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQIKGKDLILNLGYSHPVLITIPLGIDIKVEKNIGIIITGFDKELIGQLAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0JZ53_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ53_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.200e-84
Identity = 122/178 (68.54%), Postives = 151/178 (84.83%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPIKVP NV+V +   +I +SGPHGKL RKISDLI +  +DN + ++K  D+RI+ QL+GLSRTLINNM+IGVS++FER L+L+GVGYR Q+K K L+LNLGYSHPI+++IP GI++ VE N  +I+ GFDKE+VGQ AATIR+KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MVRIGKLPIKVPSNVQVEVNENIIQISGPHGKLFRKISDLISVKLSDNIIYVKKNEDTRIANQLYGLSRTLINNMVIGVSQKFERTLQLQGVGYRAQLKDKHLVLNLGYSHPILILIPVGIDIIVEKNVGIIITGFDKEVVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A7T8JK47_SCYLO (50S ribosomal protein L6, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK47_SCYLO)

HSP 1 Score: 254 bits (649), Expect = 4.880e-84
Identity = 122/178 (68.54%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPIKVP NV+V I ++++ VSGP GKL R ISDLI +   DNT+ + K  D+RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR Q+  K+L+LNLGYSHP+++ IP GIE++VE N  +I+ GFDKELVGQ AATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINNKIVQVSGPQGKLLRTISDLISVELRDNTIYVTKNEDTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQLNNKDLVLNLGYSHPVLITIPLGIEIKVEKNVGIIITGFDKELVGQLAATIREKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0F877_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F877_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.330e-81
Identity = 118/178 (66.29%), Postives = 147/178 (82.58%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI +P NV+V I  + I +SGPHGKL +KISDLI +   +N + + K  ++RI+ QL+GL+RTLINNM+IGVS +FER L+L+GVGYR Q+ G +LILNLGYSHPI + IP+GI +++E N  +I+ GFDKEL+GQ A+TIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIVIPANVQVEISERTISISGPHGKLFKKISDLISVQVNNNNIYVTKNNNTRIANQLYGLTRTLINNMVIGVSNKFERILQLQGVGYRAQVTGNDLILNLGYSHPIKITIPKGINIQIEKNGEIIISGFDKELIGQLASTIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A2I4Q301_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q301_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.680e-81
Identity = 119/178 (66.85%), Postives = 153/178 (85.96%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI +P NVEV ++ Q+I+++GPHGKL R+IS  I I   +N L+L+K+ +SR + QL+GLSRTLINNMIIGVS++F++ L L+GVGYR QI  K+L+LNLG+SHP++++IP+GIEV +E N  +I+ GFDKELVGQFAATI++KRPPEPYKGKGIL+KGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIAIPENVEVEVKEQIINITGPHGKLVREISSTISIQLANNFLTLKKRDNSRFTNQLYGLSRTLINNMIIGVSKKFDKTLMLEGVGYRAQIVNKDLVLNLGFSHPVLLLIPDGIEVVLEKNGIIIIRGFDKELVGQFAATIKSKRPPEPYKGKGILFKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8E5XRK3_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRK3_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.680e-81
Identity = 118/178 (66.29%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPIKVP NVEV I  Q+I +SGPHG+LSRK+SDL+++   +  + ++K  +++ +RQL+GL+RTLINNM+IGVSE+FER L+L+GVGYR Q+K   LILNLGYSHPI++ +P GIE+++E N  + LLG+DKELVGQ AATIR KRPPEPYKGKGI+YKGEIIK K GKSGK
Sbjct:    1 MSRIGKLPIKVPENVEVQIDKQIIHISGPHGELSRKVSDLLIVELINANIQVKKLNNTKAARQLYGLTRTLINNMVIGVSEKFERILQLQGVGYRAQVKEANLILNLGYSHPILIPVPHGIEIKIEKNVLISLLGYDKELVGQLAATIRAKRPPEPYKGKGIIYKGEIIKLKPGKSGK 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPC2_9STRA7.850e-122100.0050S ribosomal protein L6, chloroplastic n=1 Tax=Sc... [more]
A0A0R6MG01_UNDPI2.540e-8670.2250S ribosomal protein L6, chloroplastic n=25 Tax=L... [more]
A0A8F0FAR1_9PHAE2.540e-8670.79Ribosomal protein L6 n=1 Tax=Desmarestia aculeata ... [more]
A0A8F0F7U1_9PHAE8.460e-8567.98Ribosomal protein L6 n=2 Tax=Laminariales TaxID=28... [more]
D1J738_ECTSI1.200e-8469.1050S ribosomal protein L6, chloroplastic n=3 Tax=Ec... [more]
A0A8F0JZ53_9PHAE1.200e-8468.54Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A7T8JK47_SCYLO4.880e-8468.5450S ribosomal protein L6, chloroplastic n=4 Tax=Sc... [more]
A0A8F0F877_9PHAE1.330e-8166.29Ribosomal protein L6 n=1 Tax=Protohalopteris sp. T... [more]
A0A2I4Q301_9PHAE2.680e-8166.8550S ribosomal protein L6, chloroplastic n=1 Tax=Di... [more]
A0A8E5XRK3_9PHAE2.680e-8166.2950S ribosomal protein L6, chloroplastic n=1 Tax=Is... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:72962..73498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue1e-64
Seed eggNOG ortholog2880.D1J738
Preferred nameMRPL6
KEGG koko:K02933,ko:K21850
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000003,GO:0000313,GO:0000315,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022414,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0097@1,KOG3254@2759
COG Functional cat.J
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.2
Exons1
Model size537
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.396368-CDS-S-ischiensis_contig110:72961..734981622815621.396368-CDS-S-ischiensis_contig110:72961..73498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 72962..73498 +
1695739809.6142416-CDS-S-ischiensis_contig110:72961..734981695739809.6142416-CDS-S-ischiensis_contig110:72961..73498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 72962..73498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2408.1prot_S-ischiensis_contig110.2408.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 72962..73498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2408.1

>prot_S-ischiensis_contig110.2408.1 ID=prot_S-ischiensis_contig110.2408.1|Name=mRNA_S-ischiensis_contig110.2408.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTL
SLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKG
KELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRN
KRPPEPYKGKGILYKGEIIKRKVGKSGK*
back to top

mRNA from alignment at S-ischiensis_contig110:72962..73498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2408.1 ID=mRNA_S-ischiensis_contig110.2408.1|Name=mRNA_S-ischiensis_contig110.2408.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=537bp|location=Sequence derived from alignment at S-ischiensis_contig110:72962..73498+ (Schizocladia ischiensis KU_0333)
ATGTCTAGAATAGGTAAACTTCCAATAAAAGTACCCTTAAATGTAGAGGT
TACAATACAACATCAAATGATTGATGTTTCAGGTCCCCACGGTAAACTTT
CCCGAAAAATTTCCGATTTAATTTTGATTTCCTATACTGACAATACACTT
TCTTTAGAAAAAAAAATTGATTCTCGAATCTCTAGGCAATTACATGGTTT
ATCTAGAACATTAATCAATAATATGATTATTGGTGTTTCCGAAAGATTTG
AGCGTTGTTTAGAACTCAAAGGTGTGGGTTATCGTGGTCAAATAAAAGGT
AAAGAATTAATTTTAAACTTAGGCTATAGTCATCCAATCATAATGGTCAT
CCCTGAAGGAATAGAAGTAAGAGTAGAAAATAATACCACTGTAATTCTTC
TTGGTTTTGATAAAGAACTTGTGGGTCAATTTGCTGCCACAATACGTAAC
AAACGTCCACCCGAACCTTATAAAGGAAAGGGTATTTTATATAAAGGTGA
AATTATTAAACGTAAAGTAGGAAAATCTGGAAAGTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig110:72962..73498+

>mRNA_S-ischiensis_contig110.2408.1 ID=mRNA_S-ischiensis_contig110.2408.1|Name=mRNA_S-ischiensis_contig110.2408.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig110:72962..73498+ (Schizocladia ischiensis KU_0333)
ATGTCTAGAATAGGTAAACTTCCAATAAAAGTACCCTTAAATGTAGAGGT
TACAATACAACATCAAATGATTGATGTTTCAGGTCCCCACGGTAAACTTT
CCCGAAAAATTTCCGATTTAATTTTGATTTCCTATACTGACAATACACTT
TCTTTAGAAAAAAAAATTGATTCTCGAATCTCTAGGCAATTACATGGTTT
ATCTAGAACATTAATCAATAATATGATTATTGGTGTTTCCGAAAGATTTG
AGCGTTGTTTAGAACTCAAAGGTGTGGGTTATCGTGGTCAAATAAAAGGT
AAAGAATTAATTTTAAACTTAGGCTATAGTCATCCAATCATAATGGTCAT
CCCTGAAGGAATAGAAGTAAGAGTAGAAAATAATACCACTGTAATTCTTC
TTGGTTTTGATAAAGAACTTGTGGGTCAATTTGCTGCCACAATACGTAAC
AAACGTCCACCCGAACCTTATAAAGGAAAGGGTATTTTATATAAAGGTGA
AATTATTAAACGTAAAGTAGGAAAATCTGGAAAGTAAATGTCTAGAATAG
GTAAACTTCCAATAAAAGTACCCTTAAATGTAGAGGTTACAATACAACAT
CAAATGATTGATGTTTCAGGTCCCCACGGTAAACTTTCCCGAAAAATTTC
CGATTTAATTTTGATTTCCTATACTGACAATACACTTTCTTTAGAAAAAA
AAATTGATTCTCGAATCTCTAGGCAATTACATGGTTTATCTAGAACATTA
ATCAATAATATGATTATTGGTGTTTCCGAAAGATTTGAGCGTTGTTTAGA
ACTCAAAGGTGTGGGTTATCGTGGTCAAATAAAAGGTAAAGAATTAATTT
TAAACTTAGGCTATAGTCATCCAATCATAATGGTCATCCCTGAAGGAATA
GAAGTAAGAGTAGAAAATAATACCACTGTAATTCTTCTTGGTTTTGATAA
AGAACTTGTGGGTCAATTTGCTGCCACAATACGTAACAAACGTCCACCCG
AACCTTATAAAGGAAAGGGTATTTTATATAAAGGTGAAATTATTAAACGT
AAAGTAGGAAAATCTGGAAAGTAA
back to top